Clone Sequence Records
BO18055.3prime Sequence
789 bp (720 high quality bases) assembled on 2006-10-13
> BO18055.3prime
ATGGTCTAGAAAGCTTGCTTGGCCAACCAGTGCAGAAGTCGTCCGCTTCG
ATTTCTGCACCTGCGTCTGAACGCCGTGCTGCACGCACAGTCGCTCGAAG
TTGGCGCGCAGTTTTGCGCGGAGCTCCTCTCGCTTTCGCTGCACTTGCTC
CCGGTGGCACTTGAAGGCCATAACCACCTCCTGGGGAATGTAATATGTCT
CCTCGTCTTTGTCGTCGTATTCGTCGAAGTCGTCCCACATCTGCAACAAT
GAAAACTTGTGATCCAACTGCGACTGGTGACTGTAGAAGAGCAAGTCGTC
TGAGTCCTCATCGTGGACGTCGTGATTACACAGTCCATCCGAGCAAGACA
CTTCCGAGCCTTCTGGTGACGAAATCGCGCTAGATGTCCGAGAGCCGGCA
TGCGAAGGTGGATCGCTGCCGTATCCAGAATCGCGCACATCCTGCTCGCA
CGGGCAGTTAGGCATGGACGCCAGGCACTCCTCGCACTTATCGCCAACCG
TTTTGGCGATGCTTGACGAAATGCAACTGGCCACGTCAAGTTGATCGTGA
TCAGCATCCAGCGGCTGGACCCTAGCCGTGGCTTGCATCTGCTTTTGGTT
GCCCATCTTTGTGAAGGCCGCTTTCTTCTGCTTCTTTTTCTTCGATTGCT
TCTTCGGTTTCGATTTCGTTGGCTTGGACGTTAGCTCGGGTTCGGGCTCC
GGGCTCCGGGCTGCCTCTATAACAATGCCATCGTCCGCACCTGGATCGCT
TAGCTCCTCATGCTGCATCTGACTCTCCTCCTCCAGGTC
BO18055.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:47:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2182-PA | 2016 | CG2182-RA | 1243..2013 | 789..19 | 3855 | 100 | Minus |
| CG2182-PB | 1920 | CG2182-RB | 1147..1917 | 789..19 | 3855 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:36:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2182-RA | 2415 | CG2182-RA | 1525..2295 | 789..19 | 3855 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:36:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5656798..5657353 | 234..789 | 2780 | 100 | Plus |
| 3R | 32079331 | 3R | 5656356..5656572 | 19..235 | 1085 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:36:13 has no hits.
BO18055.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:38 Download gff for
BO18055.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2182-PB | 1147..1920 | 16..789 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:12:16 Download gff for
BO18055.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2182-RA | 1525..2306 | 10..789 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:09:58 Download gff for
BO18055.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2182-RA | 1525..2306 | 10..789 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:09:58 Download gff for
BO18055.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5656345..5656571 | 10..234 | 98 | <- | Plus |
| 3R | 5656799..5657353 | 235..789 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:12:16 Download gff for
BO18055.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1482067..1482293 | 10..234 | 98 | <- | Plus |
| arm_3R | 1482521..1483075 | 235..789 | 100 | | Plus |
BO18055.5prime Sequence
797 bp (794 high quality bases) assembled on 2006-10-13
> BO18055.5prime
GAAGTTATCAGTCGACATGGCCAGACTCACAAAGGTCTACAACACGGACG
ACGACGACTCCGGTTACGTTGGTCGCAGAAATTTGCCCCTGGTGGCTGGC
GATAAATTAATGATGCTCATGGACCTGAACAGCAAAGGTCTAGTGATCGA
CAGTCCGCTGATCCGCGGACGTGAACTGGAGGAGTTTTCACGGAAATTCA
AACTGCTCACAGAGGCCGAGCGCCGGCAATCGCTGGAGATCGACAGTGCC
AGTTTTATGGAAGTCCTCAATCAATGTGTCCAGTGCGTTGGCTGCCGCAG
ACGCGTAGAGCGGTTGTTTCACCAACTAACCGAGACGGGGCACCGAACAC
TTGATCCGCTGGAACTGCGACCCACTGCCACCCTGGGCATTGTGGAGGAG
AAGCTTAAGACTCCGCAGGCACTGGGAACGCTGCTCTACCGGCACCATGA
GGTTCTCAACAACCTGCTGGACAACAAACTGCGAAACAAGACGCGCTGCG
TTCTTCATTCGCTGGACGCCTTTCGTGCCAAACCCTTTTCGGAGACATGG
CGAGAGGTGTGGTCCGCCATGAAGAGTAACTGCCGCAACGAGTTAACCAT
CATCGAGACAAAGGAATTGCACGACGTACTGGAGAACTACCTGAAGAAGC
ACAAGTTTTGCTCTGGCTGCCGTACAAAGATTGAGCGCGCCTACAAAATA
CTCATTGGTGAAATATCGTCCAAGGAGAAGGGCTATGCGGCCCAGTTGTA
CGCTCATATTCGGAAGTGCGTGCCCGACCAGCACATCCACGTGACCA
BO18055.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:47:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2182-PA | 2016 | CG2182-RA | 1..781 | 17..797 | 3905 | 100 | Plus |
| CG2182-PB | 1920 | CG2182-RB | 1..685 | 113..797 | 3425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 01:39:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2182-RA | 2415 | CG2182-RA | 283..1063 | 17..797 | 3905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 01:39:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5658141..5658708 | 679..112 | 2840 | 100 | Minus |
| 3R | 32079331 | 3R | 5657815..5657934 | 797..678 | 600 | 100 | Minus |
| 3R | 32079331 | 3R | 5659535..5659630 | 112..17 | 480 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-05 01:39:39 has no hits.
BO18055.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:38 Download gff for
BO18055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2182-PA | 1..780 | 17..796 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:04:26 Download gff for
BO18055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2182-RA | 279..1062 | 9..796 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:59:27 Download gff for
BO18055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2182-RA | 279..1062 | 9..796 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 02:59:27 Download gff for
BO18055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5657816..5657932 | 680..796 | 100 | <- | Minus |
| 3R | 5659535..5659634 | 9..112 | 96 | | Minus |
| 3R | 5658141..5658707 | 113..679 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:04:26 Download gff for
BO18055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1483538..1483654 | 680..796 | 100 | <- | Minus |
| arm_3R | 1483863..1484429 | 113..679 | 100 | <- | Minus |
| arm_3R | 1485257..1485356 | 9..112 | 96 | | Minus |
BO18055.complete Sequence
2047 bp assembled on 2007-03-23
GenBank Submission: FJ634300
> BO18055.complete
GAAGTTATCAGTCGACATGGCCAGACTCACAAAGGTCTACAACACGGACG
ACGACGACTCCGGTTACGTTGGTCGCAGAAATTTGCCCCTGGTGGCTGGC
GATAAATTAATGATGCTCATGGACCTGAACAGCAAAGGTCTAGTGATCGA
CAGTCCGCTGATCCGCGGACGTGAACTGGAGGAGTTTTCACGGAAATTCA
AACTGCTCACAGAGGCCGAGCGCCGGCAATCGCTGGAGATCGACAGTGCC
AGTTTTATGGAAGTCCTCAATCAATGTGTCCAGTGCGTTGGCTGCCGCAG
ACGCGTAGAGCGGTTGTTTCACCAACTAACCGAGACGGGGCACCGAACAC
TTGATCCGCTGGAACTGCGACCCACTGCCACCCTGGGCATTGTGGAGGAG
AAGCTTAAGACTCCGCAGGCACTGGGAACGCTGCTCTACCGGCACCATGA
GGTTCTCAACAACCTGCTGGACAACAAACTGCGAAACAAGACGCGCTGCG
TTCTTCATTCGCTGGACGCCTTTCGTGCCAAACCCTTTTCGGAGACATGG
CGAGAGGTGTGGTCCGCCATGAAGAGTAACTGCCGCAACGAGTTAACCAT
CATCGAGACAAAGGAATTGCACGACGTACTGGAGAACTACCTGAAGAAGC
ACAAGTTTTGCTCTGGCTGCCGTACAAAGATTGAGCGCGCCTACAAAATA
CTCATTGGTGAAATATCGTCCAAGGAGAAGGGCTATGCGGCCCAGTTGTA
CGCTCATATTCGGAAGTGCGTGCCCGACCAGCACATCCACGTGACCACAA
ACAAGATAGAGTTCCTGGACGCGCTGATCAAGCGGGCCGAGCCCGAGGTG
AACGGTAGCTACTCTAAACTGCGCGAGCGCCACGCTAAGACGCTGGAGAT
TGCCCAGGAAGAGGTGCTGACCTGCGTGGGCATGATTATGTACGAACGGC
TGCGTCGCATCTACGTCAGTCTGCGGGAGGAGGAGCGCGCATGCCAGGTG
CTGGCCGCTGTGGGTGTCCACGCCCTTTGCCGCAGCTTTGACACGTTCGT
GGAGCAGAAGCAGGGAATCAGCAATCTGGAGCTACTCTACCAAGAGATCA
GCCGTGCTGAGAGGGCCAAGCAGATCAAGCGCGAGCAGAAGAAGCTCAAG
AAGAAGAAGAAGAAGGACGAGAAAAAGAACTTGCTGCACCGGCAATGCGA
CGATACCGAGGCCAACGAGTCTGACGAGGAGGAGGAAGAGTTGCGGAATG
AGGAACTAGACCTGGAGGAGGAGAGTCAGATGCAGCATGAGGAGCTAAGC
GATCCAGGTGCGGACGATGGCATTGTTATAGAGGCAGCCCGGAGCCCGGA
GCCCGAACCCGAGCTAACGTCCAAGCCAACGAAATCGAAACCGAAGAAGC
AATCGAAGAAAAAGAAGCAGAAGAAAGCGGCCTTCACAAAGATGGGCAAC
CAAAAGCAGATGCAAGCCACGGCTAGGGTCCAGCCGCTGGATGCTGATCA
CGATCAACTTGACGTGGCCAGTTGCATTTCGTCAAGCATCGCCAAAACGG
TTGGCGATAAGTGCGAGGAGTGCCTGGCGTCCATGCCTAACTGCCCGTGC
GAGCAGGATGTGCGCGATTCTGGATACGGCAGCGATCCACCTTCGCATGC
CGGCTCTCGGACATCTAGCGCGATTTCGTCACCAGAAGGCTCGGAAGTGT
CTTGCTCGGATGGACTGTGTAATCACGACGTCCACGATGAGGACTCAGAC
GACTTGCTCTTCTACAGTCACCAGTCGCAGTTGGATCACAAGTTTTCATT
GTTGCAGATGTGGGACGACTTCGACGAATACGACGACAAAGACGAGGAGA
CATATTACATTCCCCAGGAGGTGGTTATGGCCTTCAAGTGCCACCGGGAG
CAAGTGCAGCGAAAGCGAGAGGAGCTCCGCGCAAAACTGCGCGCCAACTT
CGAGCGACTGTGCGTGCAGCACGGCGTTCAGACGCAGGTGCAGAAATCGA
AGCGGACGACTTCTGCACTGGTTGGCCAAGCAAGCTTTCTAGACCAT
BO18055.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:16:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2182-RA | 2016 | CG2182-PA | 1..2013 | 17..2029 | 10065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:16:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2182-RA | 2415 | CG2182-RA | 283..2295 | 17..2029 | 10065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:16:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5656798..5657934 | 1814..678 | 5685 | 100 | Minus |
| 3R | 32079331 | 3R | 5658141..5658708 | 679..112 | 2840 | 100 | Minus |
| 3R | 32079331 | 3R | 5656356..5656572 | 2029..1813 | 1085 | 100 | Minus |
| 3R | 32079331 | 3R | 5659535..5659630 | 112..17 | 480 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:16:11 has no hits.
BO18055.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:09:45 Download gff for
BO18055.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2182-RA | 1..2016 | 17..2032 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:26:57 Download gff for
BO18055.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2182-RA | 276..2303 | 9..2038 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:56:52 Download gff for
BO18055.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2182-RA | 283..2295 | 17..2031 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:09:45 Download gff for
BO18055.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2182-RA | 276..2303 | 9..2038 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:14:29 Download gff for
BO18055.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2182-RA | 283..2295 | 17..2031 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:14:29 Download gff for
BO18055.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5656353..5656571 | 1814..2031 | 99 | <- | Minus |
| 3R | 5656799..5657932 | 680..1813 | 100 | <- | Minus |
| 3R | 5658141..5658707 | 113..679 | 100 | <- | Minus |
| 3R | 5659535..5659630 | 17..112 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:56:52 Download gff for
BO18055.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1482075..1482293 | 1814..2031 | 99 | <- | Minus |
| arm_3R | 1482521..1483654 | 680..1813 | 100 | <- | Minus |
| arm_3R | 1483863..1484429 | 113..679 | 100 | <- | Minus |
| arm_3R | 1485257..1485352 | 17..112 | 100 | | Minus |
BO18055.pep Sequence
Translation from 16 to 2047
> BO18055.pep
MARLTKVYNTDDDDSGYVGRRNLPLVAGDKLMMLMDLNSKGLVIDSPLIR
GRELEEFSRKFKLLTEAERRQSLEIDSASFMEVLNQCVQCVGCRRRVERL
FHQLTETGHRTLDPLELRPTATLGIVEEKLKTPQALGTLLYRHHEVLNNL
LDNKLRNKTRCVLHSLDAFRAKPFSETWREVWSAMKSNCRNELTIIETKE
LHDVLENYLKKHKFCSGCRTKIERAYKILIGEISSKEKGYAAQLYAHIRK
CVPDQHIHVTTNKIEFLDALIKRAEPEVNGSYSKLRERHAKTLEIAQEEV
LTCVGMIMYERLRRIYVSLREEERACQVLAAVGVHALCRSFDTFVEQKQG
ISNLELLYQEISRAERAKQIKREQKKLKKKKKKDEKKNLLHRQCDDTEAN
ESDEEEEELRNEELDLEEESQMQHEELSDPGADDGIVIEAARSPEPEPEL
TSKPTKSKPKKQSKKKKQKKAAFTKMGNQKQMQATARVQPLDADHDQLDV
ASCISSSIAKTVGDKCEECLASMPNCPCEQDVRDSGYGSDPPSHAGSRTS
SAISSPEGSEVSCSDGLCNHDVHDEDSDDLLFYSHQSQLDHKFSLLQMWD
DFDEYDDKDEETYYIPQEVVMAFKCHREQVQRKREELRAKLRANFERLCV
QHGVQTQVQKSKRTTSALVGQASFLDH
BO18055.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:43:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2182-PA | 671 | CG2182-PA | 1..671 | 1..671 | 3484 | 100 | Plus |
