Clone Sequence Records
BO18060.3prime Sequence
822 bp (678 high quality bases) assembled on 2006-10-13
> BO18060.3prime
ATGGTCTAGAAAGCTTGCACAGGTCTGGTTAACTTCCAGCAGTCCCTTTC
TATCGAAGAAGGGAACCAGGGAATGTAAATTTTGTTGAACTGTAGGGTTG
TTATATAATCGGTTCTTAAACCGAATGCCACGCTCATCATCGTTCATCAA
GGCATTGAAACAGGCATCCGTGGGATCCTGGCTAATCATAACTGGCTGCA
CCACTACCGTAGAATGCAAAGCAAAGAATCTCTTTTGCTCCACCTCCAAT
TTAAACTGATGCAAACTGGGAATCTGATTTTGACGATAGTTGAGCTTTTC
TAACGTCTCAGTGAATATCTTGTGGTAGAACTGGAAGAGCCCGTTCTGCT
GATCTCTACGCAGTGGCTCCTTTAGAGAAGTATTGAACAGGTGATGGAGA
TCGATGCATGGGGAGCCCCAGAAGGAGTACTGGAAGTCAATGAGCAGCAC
ATCGACGGGTCGTCCCGTATTCGGATCGTACTTGAACATCACATTGTTGG
TCCACACATCGCCATGGGCCAGAACATTAACTTGACCCGGAGTGGGTGCA
AAGCACTCCCTGCCGATGTCCATGTAGTGCGGAGCCAAAGCGAATAGCTT
CTCTCCGTAGTGGGCCAACGTGGGCACCTTGCTCATCCAGCGAGCGGCGG
CCAGCAGACCACCCACAAAGTAGCCACTGTAGGCGTTTGTATAGCGATTA
AAGAAACCACGATCGTAACTTTCGAGGGATCCCCCTTTGTCGCTCGTTCA
AGACCGCTGTGGCGGCATGGAATTTGGCCAACTTGCGCAGGATGAGGTGA
GTGTGCTCCTCGTTGAGGCGAC
BO18060.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10514-PA | 1242 | CG10514-RA | 531..1239 | 727..19 | 3545 | 100 | Minus |
| CG10514-PA | 1242 | CG10514-RA | 437..524 | 822..735 | 440 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:41:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10514-RA | 1358 | CG10514-RA | 475..1277 | 822..19 | 3965 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:41:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25278773..25279372 | 222..822 | 2925 | 99.5 | Plus |
| 3R | 32079331 | 3R | 25278508..25278711 | 19..222 | 1020 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:41:47 has no hits.
BO18060.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:41 Download gff for
BO18060.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10514-PA | 437..1242 | 15..822 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:40:29 Download gff for
BO18060.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10514-RA | 475..1281 | 14..822 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:52:18 Download gff for
BO18060.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10514-RA | 475..1281 | 14..822 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:52:18 Download gff for
BO18060.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25278504..25278710 | 14..221 | 99 | <- | Plus |
| 3R | 25278773..25279372 | 222..822 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:40:29 Download gff for
BO18060.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21104226..21104432 | 14..221 | 99 | <- | Plus |
| arm_3R | 21104495..21105094 | 222..822 | 99 | | Plus |
BO18060.5prime Sequence
800 bp (711 high quality bases) assembled on 2006-10-13
> BO18060.5prime
GAAGTTATCAGTCGACATGGCAGCGGCACCCGAGTGGCTTACCCACGAAT
ACATCGAGCATGCACTTCGCTGCCACTACAAGGATGAAGGACTAACCATA
ACTCAGCTGCAGATAAATCCCGCCCTGGGGCCTGGTGAAAACTACGGCGG
AGTTCTGACCCGTGCTCGAGTGGAGTTCACACTGTCTAACAAGGAGAAAA
ATGTGCAGAACCTGATTGTAAAGACGGAAATCGATGATGATGAGTTGACC
CAGGAACTGATGGCCCCATATGATATTTACAACCGCGAGATGACCATCTA
CCAGGAAGTGCTGCCCAAATGCAGGGAGCTGCTTAATGAGATCGGAGATA
CTGAAAGGATATTTCCCACGGCCATCTATGTGGATCGCGAGCGTATGGCC
ATTATCTTCGAAGATCTTTCTGTGGTGGGCTACGTAATGGCCGATCGAGT
GCGTCGCCTCAACGAGGAGCACACTCACCTCATCCTGCGCAAGTTGGCCA
AATTCCATGCCGCCACAGCGGTCTTGAACGAGCGACAAAGTGGATGCCTC
GAAAGTTACGATCGTGGTTTCTTTAATCGCTATACAAACGCCTACAGTGG
CTACTTTGTGGGTGGTCTGCTGGCCGCCGCTCGCTGGATGAGCAAGGTGC
CCACGTTGGCCCACTACGGAGAGAAGCTATTCGCTTTGGCTCCGCACTAC
ATGGACATCGGCAGGGAGTGCTTTGCACCCACTCCGGGTCAAGTTAATGT
TCTGGCCCCTGGCGATGTGTGGACCAACAATGTGATGTTCAAGTACGATC
BO18060.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10514-PA | 1242 | CG10514-RA | 1..784 | 17..800 | 3895 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:56:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10514-RA | 1358 | CG10514-RA | 39..822 | 17..800 | 3905 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:56:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25279025..25279808 | 800..17 | 3905 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:56:21 has no hits.
BO18060.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:41 Download gff for
BO18060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10514-PA | 1..784 | 17..800 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:08:23 Download gff for
BO18060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10514-RA | 39..822 | 17..800 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:40:20 Download gff for
BO18060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10514-RA | 39..822 | 17..800 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:40:20 Download gff for
BO18060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25279025..25279808 | 17..800 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:08:23 Download gff for
BO18060.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21104747..21105530 | 17..800 | 99 | | Minus |
BO18060.complete Sequence
1273 bp assembled on 2006-10-11
GenBank Submission: FJ634302
> BO18060.complete
GAAGTTATCAGTCGACATGGCAGCGGCACCCGAGTGGCTTACCCACGAAT
ACATCGAGCATGCACTTCGCTGCCACTACAAGGATGAAGGACTAACCATA
ACTCAGCTGCAGATAAATCCCGCCCTGGGGCCTGGTGAAAACTACGGCGG
AGTTCTGACCCGTGCTCGAGTGGAGTTCACACTGTCTAACAAGGAGAAAA
ATGTGCAGAACCTGATTGTAAAGACGGAAATCGATGATGATGAGTTGACC
CAGGAACTGATGGCCCCATATGATATTTACAACCGCGAGATGACCATCTA
CCAGGAAGTGCTGCCCAAATGCAGGGAGCTGCTTAATGAGATCGGAGATA
CTGAAAGGATATTTCCCACGGCCATCTATGTGGATCGCGAGCGTATGGCC
ATTATCTTCGAAGATCTTTCTGTGGTGGGCTACGTAATGGCCGATCGAGT
GCGTCGCCTCAACGAGGAGCACACTCACCTCATCCTGCGCAAGTTGGCCA
AATTCCATGCCGCCACAGCGGTCTTGAACGAGCGACAAAGTGGATGCCTC
GAAAGTTACGATCGTGGTTTCTTTAATCGCTATACAAACGCCTACAGTGG
CTACTTTGTGGGTGGTCTGCTGGCCGCCGCTCGCTGGATGAGCAAGGTGC
CCACGTTGGCCCACTACGGAGAGAAGCTATTCGCTTTGGCTCCGCACTAC
ATGGACATCGGCAGGGAGTGCTTTGCACCCACTCCGGGTCAAGTTAATGT
TCTGGCCCATGGCGATGTGTGGACCAACAATGTGATGTTCAAGTACGATC
CGAATACGGGACGACCCGTCGATGTGCTGCTCATTGACTTCCAGTACTCC
TTCTGGGGCTCCCCATGCATCGATCTCCATCACCTGTTCAATACTTCTCT
AAAGGAGCCACTGCGTAGAGATCAGCAGAACGGGCTCTTCCAGTTCTACC
ACAAGATATTCACTGAGACGTTAGAAAAGCTCAACTATCGTCAAAATCAG
ATTCCCAGTTTGCATCAGTTTAAATTGGAGGTGGAGCAAAAGAGATTCTT
TGCTTTGCATTCTACGGTAGTGGTGCAGCCAGTTATGATTAGCCAGGATC
CCACGGATGCCTGTTTCAATGCCTTGATGAACGATGATGAGCGTGGCATT
CGGTTTAAGAACCGATTATATAACAACCCTACAGTTCAACAAAATTTACA
TTCCCTGGTTCCCTTCTTCGATAGAAAGGGACTGCTGGAAGTTAACCAGA
CCTGTGCAAGCTTTCTAGACCAT
BO18060.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:31:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10514-RA | 1242 | CG10514-PA | 1..1239 | 17..1255 | 6195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:31:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10514-RA | 1358 | CG10514-RA | 39..1277 | 17..1255 | 6195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:31:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25278773..25279808 | 1052..17 | 5180 | 100 | Minus |
| 3R | 32079331 | 3R | 25278508..25278711 | 1255..1052 | 1020 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:31:35 has no hits.
BO18060.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:55 Download gff for
BO18060.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10514-RA | 1..1242 | 17..1259 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:41:17 Download gff for
BO18060.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10514-RA | 12..1254 | 17..1260 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:12:18 Download gff for
BO18060.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10514-RA | 39..1277 | 17..1257 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:55 Download gff for
BO18060.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10514-RA | 12..1254 | 17..1260 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:24:08 Download gff for
BO18060.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10514-RA | 39..1277 | 17..1257 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:24:08 Download gff for
BO18060.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25278506..25278710 | 1053..1257 | 99 | <- | Minus |
| 3R | 25278773..25279808 | 17..1052 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:12:18 Download gff for
BO18060.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21104228..21104432 | 1053..1257 | 99 | <- | Minus |
| arm_3R | 21104495..21105530 | 17..1052 | 100 | | Minus |
BO18060.pep Sequence
Translation from 16 to 1273
> BO18060.pep
MAAAPEWLTHEYIEHALRCHYKDEGLTITQLQINPALGPGENYGGVLTRA
RVEFTLSNKEKNVQNLIVKTEIDDDELTQELMAPYDIYNREMTIYQEVLP
KCRELLNEIGDTERIFPTAIYVDRERMAIIFEDLSVVGYVMADRVRRLNE
EHTHLILRKLAKFHAATAVLNERQSGCLESYDRGFFNRYTNAYSGYFVGG
LLAAARWMSKVPTLAHYGEKLFALAPHYMDIGRECFAPTPGQVNVLAHGD
VWTNNVMFKYDPNTGRPVDVLLIDFQYSFWGSPCIDLHHLFNTSLKEPLR
RDQQNGLFQFYHKIFTETLEKLNYRQNQIPSLHQFKLEVEQKRFFALHST
VVVQPVMISQDPTDACFNALMNDDERGIRFKNRLYNNPTVQQNLHSLVPF
FDRKGLLEVNQTCASFLDH
BO18060.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:06:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10514-PA | 413 | CG10514-PA | 1..413 | 1..413 | 2200 | 100 | Plus |
| CG11892-PA | 439 | CG11892-PA | 33..439 | 4..411 | 1089 | 50.5 | Plus |
| CG11892-PB | 439 | CG11892-PB | 33..439 | 4..411 | 1089 | 50.5 | Plus |
| CG31380-PA | 405 | CG31380-PA | 4..398 | 7..408 | 949 | 46.6 | Plus |
| CG10513-PB | 422 | CG10513-PB | 15..420 | 4..409 | 892 | 44.9 | Plus |
