Clone BO18061 Report

Search the DGRC for BO18061

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:180
Well:61
Vector:pDNR-Dual
Associated Gene/TranscriptAdk3-RA
Protein status:BO18061.pep: validated full length
Sequenced Size:682

Clone Sequence Records

BO18061.3prime Sequence

682 bp (462 high quality bases) assembled on 2006-10-13

> BO18061.3prime
ATGGTCTAGAAAGCTTGCCGCATTTATGCGGCCGTTGAGGAAAAGCTCCA
TCATCGGCCAGATCTCCTTTGTCTGTTTTCCCTTGAAAGTGGCAACCAGA
CCCTTCTTTTCGTACCAGGCTATTACCGGGCTCATCACCTCATCGTAGAG
CTCCAGTCGCTTGGCCACCACATGGGGTTTATCATCTTCGCGTTGCATCA
GCGGCTCCCCCGTCACATCATCTTTGCCAGGCACTTTGGGATTCTTGAAG
CCAATATTGTACACCCTGCCGGAGGGCGCATGGATCCAGCGATTCTTGAC
CCGGTCGATAATCACACTATGTGGAACGTCCAGCGTGATCACGGCATCGA
TTTGCTCGCGTGCAGCCAGTGCCTCGGCCTGGGCTATATTGCGCGGGAAT
CCGTCTAGGATGTACGACCTGTTGCCTACCTCGGTTATCCGGGCCAGCAT
CGTCTTGGTCACAATCGCGTCGGGCACCAGTTTACCTTCAGCAATGTACT
GCTTGGCCTTTTTTCCAAGTTCTGTGTTTTTTATGATGTTCTGGCGCAGA
ATGTCCCCCCGTGGAGATGTGCACACATCCATGGTTCTTGCAGATCAATT
CCGAAAATAGTTCCTTTGCCCGAGCCGGGGCTCCGATTATCACAGCGCGA
AAGATTTTTCCATAACATGTCGACTGATAACT

BO18061.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG6612-PB 651 Adk3-RB 108..648 559..19 2680 99.8 Minus
CG6612-PA 651 Adk3-RA 108..648 559..19 2680 99.8 Minus
CG6612-PB 651 Adk3-RB 62..112 606..556 255 100 Minus
CG6612-PA 651 Adk3-RA 62..112 606..556 255 100 Minus
CG6612-PB 651 Adk3-RB 10..41 658..627 160 100 Minus
CG6612-PA 651 Adk3-RA 10..41 658..627 160 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:34:43
Subject Length Description Subject Range Query Range Score Percent Strand
Adk3-RD 1215 CG6612-RD 259..897 658..19 3115 99.4 Minus
Adk3-RC 1515 CG6612-RC 559..1197 658..19 3115 99.4 Minus
Adk3-RA 1301 CG6612-RA 566..1204 658..19 3115 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:34:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10887663..10888301 19..658 3040 99.4 Plus
Blast to na_te.dros performed on 2015-02-03 06:34:40 has no hits.

BO18061.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:42 Download gff for BO18061.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6612-PA 1..651 15..668 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:29:09 Download gff for BO18061.3prime
Subject Subject Range Query Range Percent Splice Strand
Adk3-RA 554..1207 15..671 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:37:35 Download gff for BO18061.3prime
Subject Subject Range Query Range Percent Splice Strand
Adk3-RA 554..1207 15..671 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:37:35 Download gff for BO18061.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 10887660..10888313 15..671 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:29:09 Download gff for BO18061.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6713382..6714035 15..671 98   Plus

BO18061.5prime Sequence

681 bp (674 high quality bases) assembled on 2006-10-13

> BO18061.5prime
GAAGTTATCAGTCGACATGTTTACGAAAATCTTTCGCGCTGTGATAATCG
GAGCCCCCGGCTCGGGCAAAGGAACTATTTCGGAATTGATCTGCAAGAAC
CATGGATGTGTGCACATCTCCACGGGGGACATTCTGCGCCAGAACATCAT
AAAAAACACAGAACTTGGAAAAAAGGCCAAGCAGTACATTGCTGAAGGTA
AACTGGTGCCCGACGCGATTGTGACCAAGACGATGCTGGCCCGGATAACC
GAGGTAGGCAACAGGTCGTACATCCTAGACGGATTCCCGCGCAATATAGC
CCAGGCCGAGGCACTGGCTGCACGCGAGCAAATCGATGCCGTGATCACGC
TGGACGTTCCACATAGTGTGATTATCGACCGGGTCAAGAATCGCTGGATC
CATGCGCCCTCCGGCAGGGTGTACAATATTGGCTTCAAGAATCCCAAAGT
GCCTGGCAAAGATGATGTGACGGGGGAGCCGCTGATGCAACGCGAAGATG
ATAAACCCCATGTGGTGGCCAAGCGACTGGAGCTCTACGATGAGGTGATG
AAGCCCGGAAATAGCCTGGTACGAAAAGAAGGGTCTGGTTGCCACTTTCA
AGGGAAAACAGACAAAGGAGATCTGGCCGATGATGGAGCTTTTCCTCAAC
GACCGCATAAATGCGGGCAGCTTTCCAAACC

BO18061.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG6612-PB 651 Adk3-RB 1..535 17..551 2675 100 Plus
CG6612-PA 651 Adk3-RA 1..535 17..551 2675 100 Plus
CG6612-PB 651 Adk3-RB 535..648 552..665 545 99.1 Plus
CG6612-PA 651 Adk3-RA 535..648 552..665 545 99.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:14:37
Subject Length Description Subject Range Query Range Score Percent Strand
Adk3-RD 1215 CG6612-RD 247..897 14..665 3220 99.7 Plus
Adk3-RC 1515 CG6612-RC 547..1197 14..665 3220 99.7 Plus
Adk3-RA 1301 CG6612-RA 554..1204 14..665 3220 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:14:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10887663..10888313 665..14 3195 99.7 Minus
Blast to na_te.dros performed on 2015-02-06 10:14:33 has no hits.

BO18061.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:42 Download gff for BO18061.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6612-PA 1..651 17..669 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:39:24 Download gff for BO18061.5prime
Subject Subject Range Query Range Percent Splice Strand
Adk3-RA 554..1204 14..665 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:24:51 Download gff for BO18061.5prime
Subject Subject Range Query Range Percent Splice Strand
Adk3-RA 554..1204 14..665 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:24:51 Download gff for BO18061.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 10887663..10888313 14..665 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:39:24 Download gff for BO18061.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6713385..6714035 14..665 99   Minus

BO18061.complete Sequence

682 bp assembled on 2006-10-11

GenBank Submission: FJ634303

> BO18061.complete
GAAGTTATCAGTCGACATGTTTACGAAAATCTTTCGCGCTGTGATAATCG
GAGCCCCCGGCTCGGGCAAAGGAACTATTTCGGAATTGATCTGCAAGAAC
CATGGATGTGTGCACATCTCCACGGGGGACATTCTGCGCCAGAACATCAT
AAAAAACACAGAACTTGGAAAAAAGGCCAAGCAGTACATTGCTGAAGGTA
AACTGGTGCCCGACGCGATTGTGACCAAGACGATGCTGGCCCGGATAACC
GAGGTAGGCAACAGGTCGTACATCCTAGACGGATTCCCGCGCAATATAGC
CCAGGCCGAGGCACTGGCTGCACGCGAGCAAATCGATGCCGTGATCACGC
TGGACGTTCCACATAGTGTGATTATCGACCGGGTCAAGAATCGCTGGATC
CATGCGCCCTCCGGCAGGGTGTACAATATTGGCTTCAAGAATCCCAAAGT
GCCTGGCAAAGATGATGTGACGGGGGAGCCGCTGATGCAACGCGAAGATG
ATAAACCCCATGTGGTGGCCAAGCGACTGGAGCTCTACGATGAGGTGATG
AGCCCGGTAATAGCCTGGTACGAAAAGAAGGGTCTGGTTGCCACTTTCAA
GGGAAAACAGACAAAGGAGATCTGGCCGATGATGGAGCTTTTCCTCAACG
ACCGCATAAATGCGGCAAGCTTTCTAGACCAT

BO18061.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:41:13
Subject Length Description Subject Range Query Range Score Percent Strand
Adk3-RD 651 CG6612-PD 1..648 17..664 3240 100 Plus
Adk3-RC 651 CG6612-PC 1..648 17..664 3240 100 Plus
Adk3-RA 651 CG6612-PA 1..648 17..664 3240 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:41:14
Subject Length Description Subject Range Query Range Score Percent Strand
Adk3-RD 1215 CG6612-RD 247..897 14..664 3255 100 Plus
Adk3-RC 1515 CG6612-RC 547..1197 14..664 3255 100 Plus
Adk3-RA 1301 CG6612-RA 554..1204 14..664 3255 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:41:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10887663..10888313 664..14 3255 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:41:11 has no hits.

BO18061.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:56 Download gff for BO18061.complete
Subject Subject Range Query Range Percent Splice Strand
Adk3-RA 1..651 17..668 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:41:20 Download gff for BO18061.complete
Subject Subject Range Query Range Percent Splice Strand
Adk3-RA 79..732 14..668 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:20:25 Download gff for BO18061.complete
Subject Subject Range Query Range Percent Splice Strand
Adk3-RA 563..1204 23..666 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:56 Download gff for BO18061.complete
Subject Subject Range Query Range Percent Splice Strand
Adk3-RA 79..732 14..668 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:15:13 Download gff for BO18061.complete
Subject Subject Range Query Range Percent Splice Strand
Adk3-RA 563..1204 23..666 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:15:13 Download gff for BO18061.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10887661..10888304 23..666 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:20:25 Download gff for BO18061.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6713383..6714026 23..666 99   Minus

BO18061.pep Sequence

Translation from 16 to 682

> BO18061.pep
MFTKIFRAVIIGAPGSGKGTISELICKNHGCVHISTGDILRQNIIKNTEL
GKKAKQYIAEGKLVPDAIVTKTMLARITEVGNRSYILDGFPRNIAQAEAL
AAREQIDAVITLDVPHSVIIDRVKNRWIHAPSGRVYNIGFKNPKVPGKDD
VTGEPLMQREDDKPHVVAKRLELYDEVMSPVIAWYEKKGLVATFKGKQTK
EIWPMMELFLNDRINAASFLDH

BO18061.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:06:08
Subject Length Description Subject Range Query Range Score Percent Strand
Adk3-PD 216 CG6612-PD 1..216 1..216 1119 100 Plus
Adk3-PC 216 CG6612-PC 1..216 1..216 1119 100 Plus
Adk3-PA 216 CG6612-PA 1..216 1..216 1119 100 Plus
Adk3-PB 216 CG6612-PB 1..216 1..216 1119 100 Plus
Adk2-PA 240 CG3140-PA 21..209 8..190 345 39.2 Plus