Clone BO18062 Report

Search the DGRC for BO18062

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:180
Well:62
Vector:pDNR-Dual
Associated Gene/TranscriptCG31352-RA
Protein status:BO18062.pep: Imported from assembly
Sequenced Size:2452

Clone Sequence Records

BO18062.3prime Sequence

727 bp (724 high quality bases) assembled on 2006-10-13

> BO18062.3prime
ATGGTCTAGAAAGCTTGCGAAGAGCTTCACACGCCGCTTCAGCTCGTTGC
GTCGCCACTGGGGTAGCCGATAGAACTCCGACCTGGCGCACTGCAAGATG
TGTTCGAATTCGATGTCCGACAGATGGCGCTCTAGGTTACAGCGATCCAC
GTCCGAGGGCAGACGGTAGTTTGTGATTAGCAGTAGGTGATAGGGATAGA
TCTTGGCCGGCTCGTGCACCAGCATCGAATGGGACATGTTGGGCAGACTG
CGCCGGATGAGTCCGGCCTGCGGATAGTGGTAGGAGAGTGCTCCTGAGTA
AGTGCTCGAGGCGGGCAGGTCGCCGCCCATCAGAGCTCGCCTATCGCCCT
CGGTGATCGAGTCCACAGAAGCCTCCGATTTGCCGCAGCTCAAATCTGTG
CTGTGGGTCTTGTCGCCCAGTCCTCCATAGGAGAAGTCGGAGCTGAAGCC
ATTGCGTATATAGGGCAGAGTCGTCGTTTTGAATCCGTATCCGGGCTTGG
GCGGCGATCGGTAGGAATGTATGGCATTGTAGCTGGGCGCGTTTCCAAGC
GATTTGCCAAGCGAGCCACGGTAGCTGGTGGAGCGATCGAACATCTCGTC
CTCGTAGAAGGGCTTCTGGTGGTCCAGATTGCGCGATGGCGATGCTCCAA
TGGGCGATTCGTATCTCAATTTGTAGAGTGGCTCCTTGGAAGCGGAGGGC
GTCCTGGATGCGTTGCGCGGATCCAAA

BO18062.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:48:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG31352-PA 2421 CG31352-RA 1710..2418 727..19 3545 100 Minus
CG31332-PC 2355 unc-115-RC 1824..2327 727..224 2520 100 Minus
CG31332-PA 2307 unc-115-RA 1776..2279 727..224 2520 100 Minus
CG31332-PB 2250 unc-115-RB 1719..2222 727..224 2520 100 Minus
CG31332-PD 2283 unc-115-RD 1752..2255 727..224 2520 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 01:41:08
Subject Length Description Subject Range Query Range Score Percent Strand
Unc-115a-RG 3700 CG31352-RG 2265..2973 727..19 3545 100 Minus
Unc-115a-RF 3494 CG31352-RF 2059..2767 727..19 3545 100 Minus
Unc-115a-RC 3200 CG31352-RC 2101..2809 727..19 3545 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 01:39:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9695282..9695524 130..372 1215 100 Plus
3R 32079331 3R 9687490..9687638 224..372 745 100 Plus
3R 32079331 3R 9688714..9688855 525..666 710 100 Plus
3R 32079331 3R 9696600..9696741 525..666 710 100 Plus
3R 32079331 3R 9695113..9695225 19..131 565 100 Plus
3R 32079331 3R 9688535..9688622 438..525 440 100 Plus
3R 32079331 3R 9696421..9696508 438..525 440 100 Plus
3R 32079331 3R 9687701..9687767 372..438 335 100 Plus
3R 32079331 3R 9695587..9695653 372..438 335 100 Plus
3R 32079331 3R 9689080..9689142 665..727 315 100 Plus
3R 32079331 3R 9696966..9697028 665..727 315 100 Plus
Blast to na_te.dros performed on 2015-02-05 01:39:50 has no hits.

BO18062.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:43 Download gff for BO18062.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31352-PA 1713..2421 18..724 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:04:27 Download gff for BO18062.3prime
Subject Subject Range Query Range Percent Splice Strand
Unc-115a-RE 2125..2830 19..724 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:59:29 Download gff for BO18062.3prime
Subject Subject Range Query Range Percent Splice Strand
Unc-115a-RC 2104..2809 19..724 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 02:59:29 Download gff for BO18062.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9695113..9695223 19..129 100 <- Plus
3R 9695282..9695523 130..371 100 <- Plus
3R 9695587..9695653 372..438 100 <- Plus
3R 9696422..9696507 439..524 100 <- Plus
3R 9696600..9696739 525..664 100 <- Plus
3R 9696966..9697025 665..724 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:04:27 Download gff for BO18062.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5520835..5520945 19..129 100 <- Plus
arm_3R 5521004..5521245 130..371 100 <- Plus
arm_3R 5521309..5521375 372..438 100 <- Plus
arm_3R 5522144..5522229 439..524 100 <- Plus
arm_3R 5522322..5522461 525..664 100 <- Plus
arm_3R 5522688..5522747 665..724 100   Plus

BO18062.5prime Sequence

763 bp (747 high quality bases) assembled on 2006-10-13

> BO18062.5prime
GAAGTTATCAGTCGACATGGGTAAACAAAAAATCTACTGTGCGAAATGCA
CGAAGAAGTGCTCCGGCGAGGTGCTCCGCGTGGCGGACAACCACTTCCAC
AAGGCCTGCTTCCAGTGCTGCCAGTGCAAGAAGTCCCTGGCCACCGGCGG
ATTCTTCACAAAGGACAACGCCTACTATTGCATACCGGACTATCAGCGGC
TGTACGGCACCAAGTGCGCAAATTGCCAGCAGTATGTGGAGGGCGAGGTG
GTCAGCACCATGGGCAAGACCTATCACCAGAAGTGCTTCACCTGCTCCAA
GTGCAAGCAGCCCTTCAAGTCGGGCAGTAAGGTGACCAACACCGGAAAGG
AGGTGCTTTGCGAGCAATGCGTCACGGGTGCTCCAGTGTCGCCCAGTCGC
CAGGCGACGGGTGGAGGCGTCTCCTCGCCAGCTCCTCCGGCGGAGAGTCC
GACGAGAGCCACTGCCCACCAGCAGCACGGCAGTGTGATCTCTCATAAGG
CGCACCTCAAGGAGGACTACGATCCCAATGACTGTGCCGGCTGTGGGGAG
CTGCTGAAGGAGGGCCAGGCACTGGTGGCGTTGGACCGGCAGTGGCATGT
CTCTTGTTTCCGGTGCAAGGCCTGCCAGGCGGTGCTCAATGGGGAGTACA
TGGGCAAAGACGCGGTGCCCTACTGCGAGAAGTGCTACCAGAAGGGATTC
GGGGTGAAGTGTGCCTACTGCAGTCGCTTCATTAGCGGCAAGGTGCTCCC
AGCGGGCGACAAC

BO18062.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:48:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG31352-PA 2421 CG31352-RA 1..747 17..763 3685 99.7 Plus
CG31332-PC 2355 unc-115-RC 118..861 20..763 3670 99.7 Plus
CG31332-PA 2307 unc-115-RA 70..813 20..763 3670 99.7 Plus
CG31332-PB 2250 unc-115-RB 70..813 20..763 3670 99.7 Plus
CG31332-PD 2283 unc-115-RD 103..846 20..763 3670 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:49:02
Subject Length Description Subject Range Query Range Score Percent Strand
Unc-115a-RJ 3299 CG31352-RJ 465..1216 12..763 3715 99.6 Plus
Unc-115a-RH 3176 CG31352-RH 465..1216 12..763 3715 99.6 Plus
Unc-115a-RE 3557 CG31352-RE 465..1216 12..763 3715 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:48:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9690672..9691105 763..330 2140 99.5 Minus
3R 32079331 3R 9698558..9698991 763..330 2140 99.5 Minus
3R 32079331 3R 9691161..9691476 335..20 1580 100 Minus
3R 32079331 3R 9699047..9699362 335..20 1580 100 Minus
Blast to na_te.dros performed on 2015-02-13 00:48:58 has no hits.

BO18062.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:47 Download gff for BO18062.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31352-PA 1..747 17..763 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:42:44 Download gff for BO18062.5prime
Subject Subject Range Query Range Percent Splice Strand
Unc-115a-RA 459..1216 3..763 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:52:57 Download gff for BO18062.5prime
Subject Subject Range Query Range Percent Splice Strand
Unc-115a-RE 459..1216 3..763 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:52:57 Download gff for BO18062.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9690672..9691103 332..763 99 <- Minus
3R 9691165..9691475 21..331 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:42:44 Download gff for BO18062.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5516394..5516825 332..763 99 <- Minus
arm_3R 5516887..5517197 21..331 100 <- Minus

BO18062.complete Sequence

2452 bp assembled on 2010-05-05

GenBank Submission: KX795473

> BO18062.complete
GAAGTTATCAGTCGACATGGGTAAACAAAAAATCTACTGTGCGAAATGCA
CGAAGAAGTGCTCCGGCGAGGTGCTCCGCGTGGCGGACAACCACTTCCAC
AAGGCCTGCTTCCAGTGCTGCCAGTGCAAGAAGTCCCTGGCCACCGGCGG
ATTCTTCACAAAGGACAACGCCTACTATTGCATACCGGACTATCAGCGGC
TGTACGGCACCAAGTGCGCAAATTGCCAGCAGTATGTGGAGGGCGAGGTG
GTCAGCACCATGGGCAAGACCTATCACCAGAAGTGCTTCACCTGCTCCAA
GTGCAAGCAGCCCTTCAAGTCGGGCAGTAAGGTGACCAACACCGGAAAGG
AGGTGCTTTGCGAGCAATGCGTCACGGGTGCTCCAGTGTCGCCCAGTCGC
CAGGCGACGGGTGGAGGCGTCTCCTCGCCAGCTCCTCCGGCGGAGAGTCC
GACGAGAGCCACTGCCCACCAGCAGCACGGCAGTGTGATCTCTCATAAGG
CGCACCTCAAGGAGGACTACGATCCCAATGACTGTGCCGGCTGTGGGGAG
CTGCTGAAGGAGGGCCAGGCACTGGTGGCGTTGGACCGGCAGTGGCATGT
CTCTTGTTTCCGGTGCAAGGCCTGCCAGGCGGTGCTCAATGGGGAGTACA
TGGGCAAAGACGCGGTGCCCTACTGCGAGAAGTGCTACCAGAAGGGATTC
GGGGTGAAGTGTGCCTACTGCAGTCGCTTCATTAGCGGCAAGGTGCTCCA
GGCGGGCGACAACCACCACTTCCATCCGACCTGTGCCCGCTGCACAAAGT
GCGGCGATCCCTTCGGCGACGGCGAGGAGATGTACCTGCAGGGCAGTGCC
ATCTGGCATCCGCGATGCGGTCCGGGTCCCTCCGAGTCCGGCATAATTTT
GAACGGCGGCGGAGGCACTTCGTCGGTGGTCGGAGGTGCCTCCAATGGCA
ACTTCACAGACACTGAATGCGACCGGATGAGCTCCAGTGCCCTTAGCGAG
ATGTACATCCGCTCCAGAACTCCGAGCTTTAATGGTTCACTTTATTCCTC
TAGCCGCAAGCACTACCGAACGGTGAGTCCGGGTCTGATACTCCGGGAGT
ACGGACGACCCAATGCCGAGGACATCTCGCGCATCTACACCTACAGCTAT
CTGACGGATGCGCCGCACTATCTGCGCAAGCCGATCGATCCGTATGACAA
GACGCCGCTGTCGCCGCACTTCCATCGGCCCTCCTCATACGCGACCACCG
CCAGCAATGCGGGATCCGTGGCCGGAAGCCGCCCGCCGTCGCGTCCCCAC
TCGCGGACCCGCAGCGCCATGAAGGTGCTGGTGGACGCCATCCGCTCGGA
GACGCCGCGTCCCAAGAGTCCTGGCATGAACAACGAGGAGCCGATTGAAC
TGTCTCACTATCCGGCCGCCAAGAAGCCGCCGCCAGGTGAGCAGCCCAAG
ATCGAGCGGGATGACTTTCCCGCTCCGCCGTATCCCTACACGGATCCGGA
GCGTAGGCGGCGATACAGTGATACCTACAAGGGAGTGCCCGCCTCCGATG
ATGAGGACGAGAATGTGGAGAATGGCAAGCCGAATGGCAAGGTCAAGAAT
GGCGAGGAGCAGCAACGCCTTCAACGCGAAGCCGAACAGCTGGAAAAGCT
TAACTCGGGCATCGGATCGGCGATTGCCAAGGACCTCAAGGAGCACGCCA
AGTACAGGAAGTGGAAGCAGAACAATTTGGATCCGCGCAACGCATCCAGG
ACGCCCTCCGCTTCCAAGGAGCCACTCTACAAATTGAGATACGAATCGCC
CATTGGAGCATCGCCATCGCGCAATCTGGACCACCAGAAGCCCTTCTACG
AGGACGAGATGTTCGATCGCTCCACCAGCTACCGTGGCTCGCTTGGCAAA
TCGCTTGGAAACGCGCCCAGCTACAATGCCATACATTCCTACCGATCGCC
GCCCAAGCCCGGATACGGATTCAAAACGACGACTCTGCCCTATATACGCA
ATGGCTTCAGCTCCGACTTCTCCTATGGAGGACTGGGCGACAAGACCCAC
AGCACAGATTTGAGCTGCGGCAAATCGGAGGCTTCTGTGGACTCGATCAC
CGAGGGCGATAGGCGAGCTCTGATGGGCGGCGACCTGCCCGCCTCGAGCA
CTTACTCAGGAGCACTCTCCTACCACTATCCGCAGGCCGGACTCATCCGG
CGCAGTCTGCCCAACATGTCCCATTCGATGCTGGTGCACGAGCCGGCCAA
GATCTATCCCTATCACCTACTGCTAATCACAAACTACCGTCTGCCCTCGG
ACGTGGATCGCTGTAACCTAGAGCGCCATCTGTCGGACATCGAATTCGAA
CACATCTTGCAGTGCGCCAGGTCGGAGTTCTATCGGCTACCCCAGTGGCG
ACGCAACGAGCTGAAGCGGCGTGTGAAGCTCTTCGCAAGCTTTCTAGACC
AT

BO18062.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:31:09
Subject Length Description Subject Range Query Range Score Percent Strand
Unc-115a-RA 2421 CG31352-PA 1..2418 17..2434 12090 100 Plus
Unc-115a-RG 2487 CG31352-PG 70..2484 20..2434 12075 100 Plus
Unc-115a-RC 2520 CG31352-PC 103..2517 20..2434 12075 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:31:11
Subject Length Description Subject Range Query Range Score Percent Strand
Unc-115a-RA 3278 CG31352-RA 465..2887 12..2434 12100 100 Plus
Unc-115a-RG 3700 CG31352-RG 559..2973 20..2434 12075 100 Plus
Unc-115a-RC 3200 CG31352-RC 395..2809 20..2434 12075 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:31:07
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9690432..9691105 1003..330 3370 100 Minus
3R 32079331 3R 9698318..9698991 1003..330 3370 100 Minus
3R 32079331 3R 9689322..9689877 1614..1059 2780 100 Minus
3R 32079331 3R 9697208..9697763 1614..1059 2780 100 Minus
3R 32079331 3R 9691161..9691476 335..20 1580 100 Minus
3R 32079331 3R 9699047..9699362 335..20 1580 100 Minus
3R 32079331 3R 9695282..9695524 2323..2081 1215 100 Minus
3R 32079331 3R 9689080..9689253 1788..1615 870 100 Minus
3R 32079331 3R 9696966..9697139 1788..1615 870 100 Minus
3R 32079331 3R 9687490..9687638 2229..2081 745 100 Minus
3R 32079331 3R 9688714..9688855 1928..1787 710 100 Minus
3R 32079331 3R 9696600..9696741 1928..1787 710 100 Minus
3R 32079331 3R 9695113..9695225 2434..2322 565 100 Minus
3R 32079331 3R 9688535..9688622 2015..1928 440 100 Minus
3R 32079331 3R 9696421..9696508 2015..1928 440 100 Minus
3R 32079331 3R 9687701..9687767 2081..2015 335 100 Minus
3R 32079331 3R 9695587..9695653 2081..2015 335 100 Minus
3R 32079331 3R 9690022..9690079 1060..1003 290 100 Minus
3R 32079331 3R 9697908..9697965 1060..1003 290 100 Minus
Blast to na_te.dros performed on 2014-11-28 02:31:08 has no hits.

BO18062.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-05 18:40:10 Download gff for BO18062.complete
Subject Subject Range Query Range Percent Splice Strand
CG31352-RA 496..2913 17..2436 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:21:21 Download gff for BO18062.complete
Subject Subject Range Query Range Percent Splice Strand
Unc-115a-RA 470..2887 17..2436 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:30:54 Download gff for BO18062.complete
Subject Subject Range Query Range Percent Splice Strand
Unc-115a-RA 470..2887 17..2436 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:30:54 Download gff for BO18062.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9696966..9697139 1615..1788 100 <- Minus
3R 9695111..9695223 2324..2436 98 <- Minus
3R 9695282..9695523 2082..2323 100 <- Minus
3R 9695587..9695653 2015..2081 100 <- Minus
3R 9696422..9696507 1929..2014 100 <- Minus
3R 9696600..9696739 1789..1928 100 <- Minus
3R 9697208..9697761 1061..1614 100 <- Minus
3R 9697908..9697964 1004..1060 100 <- Minus
3R 9698318..9698989 332..1003 100 <- Minus
3R 9699051..9699363 17..331 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:21:21 Download gff for BO18062.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5520833..5520945 2324..2436 98 <- Minus
arm_3R 5521004..5521245 2082..2323 100 <- Minus
arm_3R 5521309..5521375 2015..2081 100 <- Minus
arm_3R 5522144..5522229 1929..2014 100 <- Minus
arm_3R 5522322..5522461 1789..1928 100 <- Minus
arm_3R 5522688..5522861 1615..1788 100 <- Minus
arm_3R 5522930..5523483 1061..1614 100 <- Minus
arm_3R 5523630..5523686 1004..1060 100 <- Minus
arm_3R 5524040..5524711 332..1003 100 <- Minus
arm_3R 5524773..5525085 17..331 99   Minus

BO18062.pep Sequence

Translation from 16 to 2452

> BO18062.pep
MGKQKIYCAKCTKKCSGEVLRVADNHFHKACFQCCQCKKSLATGGFFTKD
NAYYCIPDYQRLYGTKCANCQQYVEGEVVSTMGKTYHQKCFTCSKCKQPF
KSGSKVTNTGKEVLCEQCVTGAPVSPSRQATGGGVSSPAPPAESPTRATA
HQQHGSVISHKAHLKEDYDPNDCAGCGELLKEGQALVALDRQWHVSCFRC
KACQAVLNGEYMGKDAVPYCEKCYQKGFGVKCAYCSRFISGKVLQAGDNH
HFHPTCARCTKCGDPFGDGEEMYLQGSAIWHPRCGPGPSESGIILNGGGG
TSSVVGGASNGNFTDTECDRMSSSALSEMYIRSRTPSFNGSLYSSSRKHY
RTVSPGLILREYGRPNAEDISRIYTYSYLTDAPHYLRKPIDPYDKTPLSP
HFHRPSSYATTASNAGSVAGSRPPSRPHSRTRSAMKVLVDAIRSETPRPK
SPGMNNEEPIELSHYPAAKKPPPGEQPKIERDDFPAPPYPYTDPERRRRY
SDTYKGVPASDDEDENVENGKPNGKVKNGEEQQRLQREAEQLEKLNSGIG
SAIAKDLKEHAKYRKWKQNNLDPRNASRTPSASKEPLYKLRYESPIGASP
SRNLDHQKPFYEDEMFDRSTSYRGSLGKSLGNAPSYNAIHSYRSPPKPGY
GFKTTTLPYIRNGFSSDFSYGGLGDKTHSTDLSCGKSEASVDSITEGDRR
ALMGGDLPASSTYSGALSYHYPQAGLIRRSLPNMSHSMLVHEPAKIYPYH
LLLITNYRLPSDVDRCNLERHLSDIEFEHILQCARSEFYRLPQWRRNELK
RRVKLFASFLDH

BO18062.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:08:45
Subject Length Description Subject Range Query Range Score Percent Strand
Unc-115a-PA 806 CG31352-PA 1..806 1..806 4395 100 Plus
Unc-115a-PC 839 CG31352-PC 34..839 1..806 4392 99.9 Plus
Unc-115a-PG 828 CG31352-PG 24..828 2..806 4390 100 Plus
Unc-115a-PB 844 CG31352-PB 40..844 2..806 4390 100 Plus
Unc-115a-PE 787 CG31352-PE 1..787 1..806 4269 97.6 Plus