Clone Sequence Records
BO18063.3prime Sequence
718 bp (674 high quality bases) assembled on 2006-10-13
> BO18063.3prime
ATGGTCTAGAAAGCTTGCGTAGCGATTGTAGCGACCGCGGGCGCGTTGTC
GCTGCGGCGTGGCCTTGGCTCCGGCGGCAGCGCGAGCAGGCGTTGCCTTC
TTGGCCGGAGATGGAGAGGCGTCTGCCGACGTTGCCGCAGCTGCGGGACT
GGCAACAGCGGCTGGAGCAGCTGCCTTGGTCGGAGTCTTGGCTGGGGTCT
TGGCTGGTGGTGCAGGTTCAGCCGGGGCAGGAGTTTGGACTGGAGCTGGC
TCAGGTTCGGGCTCTTGCTCGCCCTCCTGACCCTCTTCCTCCTGGGCTTC
CATCTCCTCTTCGCCGTTGTCCTGGCCGGCGCCATCTTCCTCGACCTCAG
CCTCGGCTTCCTCGTCACCTTCGCCTTCGCCCTCGCCCTCAGCATTATCA
TCCACCATCTCCACGTCCTCGTCATCGCCAGTGGCTTCCGATGGATCGTA
CAGCTCACCCTCAGCGCCTTCGGTGGTTTCCTCGGCGGCGCCCTCGGCAG
CCGGAGCCTCTGCCTCCTCAACCTTGCGCTTCTTACGCTCATTCTCCTCC
AGGGCGGCAGCTGCGCGCTTCTGTGCGATCTTGGTATCGCTTGATTTCTC
GTTGATAAACTTCAAGAAGTTGCGGTGATGAGTCGCCGTACGGGAGTGAA
TCTCGGCGGTCACCTCGGTGTCGAAGAACTTGCTGCACACCGAGCACTCA
TAGCACTCCAGCTTGGAG
BO18063.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:48:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6143-PA | 1509 | Pep-RA | 807..1506 | 718..19 | 3475 | 99.8 | Minus |
| CG6143-PB | 2151 | Pep-RB | 1449..2148 | 718..19 | 3475 | 99.8 | Minus |
| CG6143-PC | 2082 | Pep-RC | 1380..2079 | 718..19 | 3475 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:55:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pep-RD | 2626 | CG6143-RD | 1522..2221 | 718..19 | 3485 | 99.9 | Minus |
| Pep-RC | 2691 | CG6143-RC | 1587..2286 | 718..19 | 3485 | 99.9 | Minus |
| Pep-RB | 2792 | CG6143-RB | 1688..2387 | 718..19 | 3485 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:55:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17638508..17639207 | 19..718 | 3485 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 03:55:31 has no hits.
BO18063.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:48 Download gff for
BO18063.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6143-PC | 1380..2082 | 15..718 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 09:04:14 Download gff for
BO18063.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pep-RB | 1688..2391 | 14..718 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 06:02:30 Download gff for
BO18063.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pep-RB | 1688..2391 | 14..718 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 06:02:30 Download gff for
BO18063.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17638504..17639207 | 14..718 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 09:04:14 Download gff for
BO18063.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17631604..17632307 | 14..718 | 99 | | Plus |
BO18063.5prime Sequence
849 bp (782 high quality bases) assembled on 2006-10-13
> BO18063.5prime
GAAGTTATCAGTCGACATGTTCTACTGTCATCTGTGCAAGAAGCACATGT
GGGATGCCAACTCTTTCGAGAACCACATCAAGGGCCGCACCCATCTGATG
ATGCGTGAGGGCATTGAGGAGAGCTATCGCCTCAAGGCCAACATGATCCG
TCAGGAGGCTAAGATCGCAGAGCAGCTCAAGTCGATCGAGTTTGACCGCT
TGAAGCGCATGGGCAAAAGCAAGCAGCGTCAGCTGGACTACTGCACCATG
TGCGACCTGAACTTCCATGGTCACATCTCGACCCATCGCAAGTCGGAGGG
ACATTTGCAGCTGAAGAAGTTCTTGCACCCCAAGTGCATTGAGTGCAACA
AGGAGTTCGCCACTCGCATTGACTACGATACTCATCTGCTGTCCGCCGAG
CATCTGAAGAAGGCTGCCGAGAACAACACCAAGGTGGGTGAGCGCAAGCG
CCAGACCTTGCCCATCAGCACCGAAGAAGAGGAGACCCGCGATTTGCGCC
TGCCCCAGAAGCGCAAGAAGAAGCCGGTCAAGAAGGAGGGCGAAGCAGCC
GATGGCGAGGCTAAGAAGGAGGGTGCCGGCGATGGCGAGGGTGCCGAAGG
TGATGAAGCCGAGGGAGAAGAGGCCAAGGAGGGTGAGGAAGCTGCTGACG
AGACAAAGGAGGGCGATGAGCTAAACGAGAGCCAAGAGGAAGAGGAAGTG
GCACTGCCCGTGGACCCCGAGGACTGCATCCTTGACTTCAACGACGGCGA
TGAGATCCCCAGCGAGGTGGATACCCGCCTACCTAAGTACAACTGGCAGC
GTGCTGTCGGTCCCGGTCTGATCTCCAAGCTGGAGTGCTATGAGTGCTC
BO18063.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:48:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6143-PB | 2151 | Pep-RB | 639..1475 | 13..849 | 4160 | 99.8 | Plus |
| CG6143-PC | 2082 | Pep-RC | 570..1406 | 13..849 | 4160 | 99.8 | Plus |
| CG6143-PA | 1509 | Pep-RA | 1..833 | 17..849 | 4140 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:10:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pep-RD | 2626 | CG6143-RD | 712..1548 | 13..849 | 4170 | 99.9 | Plus |
| Pep-RC | 2691 | CG6143-RC | 777..1613 | 13..849 | 4170 | 99.9 | Plus |
| Pep-RB | 2792 | CG6143-RB | 878..1714 | 13..849 | 4170 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:09:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17639181..17640017 | 849..13 | 4170 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:10:00 has no hits.
BO18063.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:48 Download gff for
BO18063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6143-PC | 570..1406 | 13..849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:35:17 Download gff for
BO18063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pep-RB | 878..1714 | 13..849 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:28:30 Download gff for
BO18063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pep-RB | 878..1714 | 13..849 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:28:30 Download gff for
BO18063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17639181..17640017 | 13..849 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:35:17 Download gff for
BO18063.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17632281..17633117 | 13..849 | 99 | | Minus |
BO18063.complete Sequence
1540 bp assembled on 2007-03-23
GenBank Submission: FJ634304
> BO18063.complete
GAAGTTATCAGTCGACATGTTCTACTGTCATCTGTGCAAGAAGCACATGT
GGGATGCCAACTCTTTCGAGAACCACATCAAGGGCCGCACCCATCTGATG
ATGCGTGAGGGCATTGAGGAGAGCTATCGCCTCAAGGCCAACATGATCCG
TCAGGAGGCTAAGATCGCAGAGCAGCTCAAGTCGATCGAGTTTGACCGCT
TGAAGCGCATGGGCAAAAGCAAGCAGCGTCAGCTGGACTACTGCACCATG
TGCGACCTGAACTTCCATGGTCACATCTCGACCCATCGCAAGTCGGAGGG
ACATTTGCAGCTGAAGAAGTTCTTGCACCCCAAGTGCATTGAGTGCAACA
AGGAGTTCGCCACTCGCATTGACTACGATACTCATCTGCTGTCCGCCGAG
CATCTGAAGAAGGCTGCCGAGAACAACACCAAGGTGGGTGAGCGCAAGCG
CCAGACCTTGCCCATCAGCACCGAAGAAGAGGAGACCCGCGATTTGCGCC
TGCCCCAGAAGCGCAAGAAGAAGCCGGTCAAGAAGGAGGGCGAAGCAGCC
GATGGCGAGGCTAAGAAGGAGGGTGCCGGCGATGGCGAGGGTGCCGAAGG
TGATGAAGCCGAGGGAGAAGAGGCCAAGGAGGGTGAGGAAGCTGCTGACG
AGACAAAGGAGGGCGATGAGCTAAACGAGAGCCAAGAGGAAGAGGAAGTG
GCACTGCCCGTGGACCCCGAGGACTGCATCCTTGACTTCAACGACGGCGA
TGAGATCCCCAGCGAGGTGGATACCCGCCTACCTAAGTACAACTGGCAGC
GTGCTGTCGGTCCCGGTCTGATCTCCAAGCTGGAGTGCTATGAGTGCTCG
GTGTGCAGCAAGTTCTTCGACACCGAGGTGACCGCCGAGATTCACTCCCG
TACGGCGACTCATCACCGCAACTTCTTGAAGTTTATCAACGAGAAATCAA
GCGATACCAAGATCGCACAGAAGCGCGCAGCTGCCGCCCTGGAGGAGAAT
GAGCGTAAGAAGCGCAAGGTTGAGGAGGCAGAGGCTCCGGCTGCCGAGGG
CGCCGCCGAGGAAACCACCGAAGGCGCTGAGGGTGAGCTGTACGATCCAT
CGGAAGCCACTGGCGATGACGAGGACGTGGAGATGGTGGATGATAATGCT
GAGGGCGAGGGCGAAGGCGAAGGTGACGAGGAAGCCGAGGCTGAGGTCGA
GGAAGATGGCGCCGGCCAGGACAACGGCGAAGAGGAGATGGAAGCCCAGG
AGGAAGAGGGTCAGGAGGGCGAGCAAGAGCCCGAACCTGAGCCAGCTCCA
GTCCAAACTCCTGCCCCGGCTGAACCTGCACCACCAGCCAAGACCCCAGC
CAAGACTCCGACCAAGGCAGCTGCTCCAGCCGCTGTTGCCAGTCCCGCAG
CTGCGGCAACGTCGGCAGACGCCTCTCCATCTCCGGCCAAGAAGGCAACG
CCTGCTCGCGCTGCCGCCGGAGCCAAGGCCACGCCGCAGCGACAACGCGC
CCGCGGTCGCTACAATCGCTACGCAAGCTTTCTAGACCAT
BO18063.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:56:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pep-RD | 2082 | CG6143-PD | 570..2079 | 13..1522 | 7520 | 99.9 | Plus |
| Pep-RC | 2082 | CG6143-PC | 570..2079 | 13..1522 | 7520 | 99.9 | Plus |
| Pep-RB | 2151 | CG6143-PB | 639..2148 | 13..1522 | 7520 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:57:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pep-RD | 2626 | CG6143-RD | 712..2221 | 13..1522 | 7520 | 99.9 | Plus |
| Pep-RC | 2691 | CG6143-RC | 777..2286 | 13..1522 | 7520 | 99.9 | Plus |
| Pep-RB | 2792 | CG6143-RB | 878..2387 | 13..1522 | 7520 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:56:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17638508..17640017 | 1522..13 | 7520 | 99.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:56:58 has no hits.
BO18063.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:09:30 Download gff for
BO18063.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pep-RC | 570..2082 | 13..1526 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:26:38 Download gff for
BO18063.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pep-RC | 772..2285 | 13..1527 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:36:26 Download gff for
BO18063.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pep-RB | 887..2387 | 22..1524 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:09:30 Download gff for
BO18063.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pep-RC | 772..2285 | 13..1527 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:30:33 Download gff for
BO18063.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pep-RB | 887..2387 | 22..1524 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:30:33 Download gff for
BO18063.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17638506..17640008 | 22..1524 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:36:26 Download gff for
BO18063.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17631606..17633108 | 22..1524 | 99 | | Minus |
BO18063.pep Sequence
Translation from 16 to 1540
> BO18063.pep
MFYCHLCKKHMWDANSFENHIKGRTHLMMREGIEESYRLKANMIRQEAKI
AEQLKSIEFDRLKRMGKSKQRQLDYCTMCDLNFHGHISTHRKSEGHLQLK
KFLHPKCIECNKEFATRIDYDTHLLSAEHLKKAAENNTKVGERKRQTLPI
STEEEETRDLRLPQKRKKKPVKKEGEAADGEAKKEGAGDGEGAEGDEAEG
EEAKEGEEAADETKEGDELNESQEEEEVALPVDPEDCILDFNDGDEIPSE
VDTRLPKYNWQRAVGPGLISKLECYECSVCSKFFDTEVTAEIHSRTATHH
RNFLKFINEKSSDTKIAQKRAAAALEENERKKRKVEEAEAPAAEGAAEET
TEGAEGELYDPSEATGDDEDVEMVDDNAEGEGEGEGDEEAEAEVEEDGAG
QDNGEEEMEAQEEEGQEGEQEPEPEPAPVQTPAPAEPAPPAKTPAKTPTK
AAAPAAVASPAAAATSADASPSPAKKATPARAAAGAKATPQRQRARGRYN
RYASFLDH
BO18063.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:40:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pep-PD | 693 | CG6143-PD | 192..693 | 1..502 | 2628 | 100 | Plus |
| Pep-PC | 693 | CG6143-PC | 192..693 | 1..502 | 2628 | 100 | Plus |
| Pep-PB | 716 | CG6143-PB | 215..716 | 1..502 | 2628 | 100 | Plus |
