Clone Sequence Records
BO18064.5prime Sequence
215 bp (214 high quality bases) assembled on 2006-10-13
> BO18064.5prime
GAAGTTATCAGTCGACATGTCTTGTGCGGCCACCCTCTCGTCGGCCAAGG
ACTCCACCAATGCAAATGCCAGTGGTGGTGGTGGTGGTGGTGGAGGAGGA
GGAGCACCGACAAACAGCAATACCAACACTAACACCAACACACAGTCCAC
AGCTGTGGGTGTGGTAGTGAGCAGTGCAGCAGGCACAGGTGTTGGTGTTG
GTGGGGGAGGAGGTG
BO18064.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:49:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5841-PA | 3681 | mib1-RA | 1..199 | 17..215 | 995 | 100 | Plus |
| CG3399-PB | 3150 | capu-RB | 1472..1499 | 104..77 | 140 | 100 | Minus |
| CG3399-PA | 3180 | capu-RA | 1502..1529 | 104..77 | 140 | 100 | Minus |
| CG3399-PC | 3465 | capu-RC | 1787..1814 | 104..77 | 140 | 100 | Minus |
| CG3399-PD | 3624 | capu-RD | 1946..1973 | 104..77 | 140 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 01:41:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mib1-RA | 4026 | CG5841-RA | 165..363 | 17..215 | 995 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 01:41:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16011450..16011648 | 215..17 | 995 | 100 | Minus |
Blast to na_te.dros performed 2015-02-05 01:41:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3S18 | 6126 | 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). | 4709..4755 | 23..69 | 100 | 68.1 | Plus |
BO18064.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:49 Download gff for
BO18064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5841-PA | 1..199 | 17..215 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:04:29 Download gff for
BO18064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mib1-RA | 160..363 | 11..215 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:59:31 Download gff for
BO18064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mib1-RA | 160..363 | 11..215 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 02:59:31 Download gff for
BO18064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16011450..16011646 | 19..215 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:04:29 Download gff for
BO18064.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16004550..16004746 | 19..215 | 100 | -> | Minus |
BO18064.3prime Sequence
810 bp (671 high quality bases) assembled on 2006-10-13
> BO18064.3prime
ATGGTCTAGAAAGCTTGCGAAGAGCAGGATGCGTTTTTCCACGGTCTTGC
GGCAAATGGGACACCCCTCAATCTGGTCGCCACACATCTGGCACGTGCCG
TGGCCACATAGGAAGACCATGTTCTTTATGCGGTCAAAGCAGACAGGACA
CATAGTCTGTTCCTTGATGTCCTGCAACTGCTGCTTCAACTTTTGGACAT
CATCCATCTGGAAGTTGTTGACATTGGAAGGAGCCACCATCGCGTTTCCA
GCTGCTGACAGATTCGAGACATTCGAAGAGGCTGCTGCAGCGGCCAGGAG
ATTATTCTGGCTATTCAACTGATTGCTGCTGCCCGCCACTGGAGTAACCA
CGGTGTTGTTCATGGCCACGCTATGGCCGGAGGCATTGGCACAAGCTGCC
GCTGCTGCAGCTTCCATGAAACGATCGTCGGGCAGTGGCAAGCCCACTGT
TGCCATCGCTCCAGCTGCCACGGACACCTTCTCCGGTCGTCCACTACCTC
CGCAGCAAAGGCTGAACGATAATATCTCATCGATTTGCGTGCGACACAGG
ACGCACTTTTTCATCAAAGCACTGCAGTGCTCACATGCGACCATATGGCC
ACAGGGGCGGAAGAAGACGGCTGCCCTGCGATCCGAGCACACCAGACACT
CGTCGATCTTTTCGCGCGAGGAGACGGTCTCCCGACAGATGAGGCATTTC
TTCACCCTCGGAGCGCAGGTCTCGCAGCAACTGACATGGCCACAGGGCTT
AAAGACCGTATCCCGCTTGGCATCCGACCAAACCAACACTCATCAAGACT
GGCTGAAGAT
BO18064.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:49:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5841-PA | 3681 | mib1-RA | 2890..3678 | 806..19 | 3880 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:48:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mib1-RB | 3562 | CG5841-RB | 2586..3378 | 810..19 | 3910 | 99.6 | Minus |
| mib1-RA | 4026 | CG5841-RA | 3050..3842 | 810..19 | 3910 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:48:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16006933..16007587 | 157..810 | 3195 | 99.5 | Plus |
| 3L | 28110227 | 3L | 16006736..16006875 | 19..158 | 700 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:48:07 has no hits.
BO18064.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:49 Download gff for
BO18064.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5841-PA | 2886..3681 | 16..810 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:03:45 Download gff for
BO18064.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mib1-RA | 3050..3848 | 13..810 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:56:33 Download gff for
BO18064.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mib1-RA | 3050..3848 | 13..810 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:56:33 Download gff for
BO18064.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16006730..16006873 | 13..156 | 98 | <- | Plus |
| 3L | 16006933..16007587 | 157..810 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:03:45 Download gff for
BO18064.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15999830..15999973 | 13..156 | 98 | <- | Plus |
| arm_3L | 16000033..16000687 | 157..810 | 99 | | Plus |
BO18064.complete Sequence
3712 bp assembled on 2010-01-06
GenBank Submission: KX796169
> BO18064.complete
GAAGTTATCAGTCGACATGTCTTGTGCGGCCACCCTCTCGTCGGCCAAGG
ACTCCACCAATGCAAATGCCAGTGGTGGTGGTGGTGGTGGTGGAGGAGGA
GGAGCACCGACAAACAGCAATACCAACACTAACACCAACACACAGTCCAC
AGCTGTGGGTGTGGTAGTGAGCAGTGCAGCAGGCACAGGTGTTGGTGTTG
GTGGGGGAGGAGGTGGGGGTGGTTCCCTTCCCGGTGGCACCACCTCCTCG
TCCTCCGCCTCAGCCGCCGGTGGCGTTGCAGCGGGCGGCGGCGGCAATTC
GGCAGCGGCCCTCGTCCGAAGATTCTCCATGGAGGGCGTGGGTGCCAGGG
TGATCCGCGGACCGGACTGGAAATGGAACAAACAGGACGGCGGCGAAGGA
CACGTGGGCACCGTTCGCAATTTCGAATCCGCCGAGGAGGTGGTCGTGGT
CTGGGACAATGGAACAGCTGCCAACTATCGCTGCGCCGGAGCCTATGATC
TGCGCATCCTGGACAGTGCACCCACTGGAGTAAAGCACGAGGGCACCATG
TGCGACACTTGCCGCCAGCAACCGATCTTTGGCATCCGCTGGAAGTGTGC
CGAGTGCATTAATTACGATTTGTGCTCCATCTGCTACCACGGAGATAAAC
ATCATCTGAGGCACCGTTTCTACAGGATCACCACGCCGGGAGGTGAACGA
ACCATGCTGGAACCGCGTCGTAAGTCCAAGAAAGTGCTCGCCAGAGGCAT
CTTTCCGGGAGCTCGTGTCGTTCGCGGCGTGGATTGGCAGTGGGAGGATC
AGGACGGAGGCGTTGGTCGGCGTGGCAAGGTCAACGAGATCCAGGACTGG
TCTTCGGCCTCGCCAAGATCGGCAGCCTACGTGATTTGGGACAATGGCTC
CAAGAATCTGTACCGCGTTGGATTTGAGGGCATGGCAGATCTAAAGGTCG
TTAACGATGCCAAGGGTAGTAATGTTTACCGGGATCATCTGCCACTACTG
GGCGAAAACGGACCCGGAAAAGGACCGCATGGCTTCCAGATTGGCGACAA
GGTTACAGTGGATCTAGATCTAGAAATCGTTCAGTCTCTGCAGCATGGAC
ATGGCGGCTGGACCGATGGCATGTTCGAGTGCCTAAGCAACGCAGGAATG
GTCGTGGGCATCGATGAGGATCACGACATTGTGGTGGCCTACAATTCCGG
CAATCGCTGGACTTTCAATCCAGCTGTCCTTACAAAAGTATCCTCGCCAA
CCACTGCTCCGCCCGAGTTTCAGGTGGGCGACATTGTCAAGATCTGTTCC
GATGTGGAGAGCATCAAGATTTTGCAGCGAGGACACGGCGAGTGGGCTGA
CGCCATGCAATTGACTCTGGGAAAGATCGGCCGCGTGCAACAGGTCTATC
ATGATAACGACCTTAAAGTGGAGGTGGGCAATACTTCGTGGACCTACAAT
CCGCTGGCCGTTTGCAAGGTGGCTTCTTCAACTGCCTCCGATGGGAGCTG
CGCTCCAGTTATCCCGAGTAGTGAACGTCTTTCGGCCATTCTCAAAAAAC
TGTTCGAACCAAATGTCTCCGGCGATGCCACTGAGGAATTTGTCAAGGCA
GCAGCCAATGGATTTGCAGCACGTTGTGAGGAGTACTTGGCTGGCGCAGC
TCAACCCTCGACCTCCAGTGCCTCGCCCAGTTCTGGACCGGATGTCAATG
TGAATGGTGTGTTTGCCGGACATACTGCTCTGCAAGCAGCCAGCCAGAAT
GGCCATATTGAGGTGATACAGGTACTACTCCGGCACGCCGTCGACGTAGA
AATTGAGGACAAGGACGGAGATCGCGCTGTCCACCATGCCGCGTTTGGTG
ATGAGGCAGCGGTGATCGAGATATTGGCCAAAGCCGGGGCAGACTTAAAT
GCGCGCAATAAGCGCAGGCAGACGTCTCTGCACATTGCTGTCAATAAGGG
CCATTTGAACGTAGTGAAGACGCTTCTTACGCTAGGTTGCCATCCTAGTT
TACAAGATTCCGAGGGAGATACCCCCCTACACGATGCCATATCCAAGGAG
CACGACGAGATGCTGTCCCTGTTGCTGGACTTCGGGGCCGACATCACGCT
AAACAACAATAATGGATTCAATGCATTGCATCATGCTGCTCTCAAGGGTA
ATCCTAGTGCCATGAAGATCCTGCTGACCAAGACGAACCGTCCTTGGATT
GTGGAAGAGAAGAAGGATGATGGCTACACAGCTCTGCACTTGGCAGCACT
TAACAACCACGTTGAAATTGCTGAGCTACTAGTGCATATGGGTAAGGCCA
ATATGGATAGGCAAAATGTGAATCTCCAGACGGCTTTGCATCTTGCGGTG
GAGCGTCAGCATGTGCAAATCGTCAAGCTGCTGGTGCAGGATGGGGCAGA
TCTTAACATACCCGACAAAGACGGGGATACTCCGCTGCATGAAGCGTTGC
GACATCACACTCTGTCGCAGCTGAAGCAACTGCAAGATGTGGAAGGATTT
GGTAAGCTCTTGATGGGCCTGAGAAATGCTAATAACAAGAAGGCCTCTGC
TTCGATTGCATGCTTCTTGGCTGCCAATGGAGCTGATTTGACCTTAAAGA
ATCGCAAGCAGCAGACCCCACTGGACCTGTGCCCAGATCCCAATCTCTGC
AAGACCCTGGTCAAGTGCTACAACGAAAGGAAGACCGACGACTCTGAGTT
GCCCGGAAATGTAGCTGGAACGAGTTCGAGTGCCAGGGCAAGAGCAGCCA
GTGGTAGCTTAAATCAGTCCTCCTCAGTCAATATGCCGCTTTCCAGCCTA
GCTGCCTCATCCACTTTCCCAGCTGCCTCATCATCTTCCATATTTGCCCT
CAACGGCATCGCCAACGAAATGAGCCAGTCCCTGCACGAGGATCCTCCGA
AATCGTCAGCCAGTCTTGATGAGTGTTTGGTTTGCTCGGATGCCAAGCGG
GATACGGTCTTTAAGCCCTGTGGCCATGTCAGTTGCTGCGAGACCTGCGC
TCCGAGGGTGAAGAAATGCCTCATCTGTCGGGAGACCGTCTCCTCGCGCG
AAAAGATCGACGAGTGTCTGGTGTGCTCGGATCGCAGGGCAGCCGTCTTC
TTCCGCCCCTGTGGCCATATGGTCGCATGTGAGCACTGCAGTGCTTTGAT
GAAAAAGTGCGTCCTGTGTCGCACGCAAATCGATGAGATATTATCGTTCA
GCCTTTGCTGCGGAGGTAGTGGACGACCGGAGAAGGTGTCCGTGGCAGCT
GGAGCGATGGCAACAGTGGGCTTGCCACTGCCCGACGATCGTTTCATGGA
AGCTGCAGCAGCGGCAGCTTGTGCCAATGCCTCCGGCCATAGCGTGGCCA
TGAACAACACCGTGGTTACTCCAGTGGCGGGCAGCAGCAATCAGTTGAAT
AGCCAGAATAATCTCCTGGCCGCTGCAGCAGCCTCTTCGAATGTCTCGAA
TCTGTCAGCAGCTGGAAACGCGATGGTGGCTCCTTCCAATGTCAACAACT
TCCAGATGGATGATGTCCAAAAGTTGAAGCAGCAGTTGCAGGACATCAAG
GAACAGACTATGTGTCCTGTCTGCTTTGACCGCATAAAGAACATGGTCTT
CCTATGTGGCCACGGCACGTGCCAGATGTGTGGCGACCAGATTGAGGGGT
GTCCCATTTGCCGCAAGACCGTGGAAAAACGCATCCTGCTCTTCGCAAGC
TTTCTAGACCAT
BO18064.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:20:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mib1-RA | 3681 | CG5841-PA | 1..3678 | 17..3694 | 18225 | 99.7 | Plus |
| mib1-RB | 3348 | CG5841-PB | 37..3345 | 386..3694 | 16380 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:20:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mib1-RA | 4026 | CG5841-RA | 165..3842 | 17..3694 | 18225 | 99.7 | Plus |
| mib1-RB | 3562 | CG5841-RB | 70..3378 | 386..3694 | 16380 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:20:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16006933..16008870 | 3556..1619 | 9570 | 99.6 | Minus |
| 3L | 28110227 | 3L | 16008929..16010165 | 1619..383 | 6140 | 99.8 | Minus |
| 3L | 28110227 | 3L | 16011279..16011648 | 386..17 | 1850 | 100 | Minus |
| 3L | 28110227 | 3L | 16006736..16006875 | 3694..3555 | 700 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:20:42 has no hits.
BO18064.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-01-06 09:26:17 Download gff for
BO18064.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mib1-RA | 165..3842 | 17..3696 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:17:04 Download gff for
BO18064.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mib1-RA | 165..3842 | 17..3696 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:27:12 Download gff for
BO18064.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mib1-RA | 165..3842 | 17..3696 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:27:12 Download gff for
BO18064.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16006733..16006873 | 3557..3696 | 98 | <- | Minus |
| 3L | 16006933..16008870 | 1619..3556 | 99 | <- | Minus |
| 3L | 16008930..16010162 | 386..1618 | 99 | <- | Minus |
| 3L | 16011280..16011648 | 17..385 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:17:04 Download gff for
BO18064.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15999833..15999973 | 3557..3696 | 98 | <- | Minus |
| arm_3L | 16000033..16001970 | 1619..3556 | 99 | <- | Minus |
| arm_3L | 16004380..16004748 | 17..385 | 100 | | Minus |
| arm_3L | 16002030..16003262 | 386..1618 | 99 | <- | Minus |
BO18064.pep Sequence
Translation from 16 to 3712
> BO18064.pep
MSCAATLSSAKDSTNANASGGGGGGGGGGAPTNSNTNTNTNTQSTAVGVV
VSSAAGTGVGVGGGGGGGGSLPGGTTSSSSASAAGGVAAGGGGNSAAALV
RRFSMEGVGARVIRGPDWKWNKQDGGEGHVGTVRNFESAEEVVVVWDNGT
AANYRCAGAYDLRILDSAPTGVKHEGTMCDTCRQQPIFGIRWKCAECINY
DLCSICYHGDKHHLRHRFYRITTPGGERTMLEPRRKSKKVLARGIFPGAR
VVRGVDWQWEDQDGGVGRRGKVNEIQDWSSASPRSAAYVIWDNGSKNLYR
VGFEGMADLKVVNDAKGSNVYRDHLPLLGENGPGKGPHGFQIGDKVTVDL
DLEIVQSLQHGHGGWTDGMFECLSNAGMVVGIDEDHDIVVAYNSGNRWTF
NPAVLTKVSSPTTAPPEFQVGDIVKICSDVESIKILQRGHGEWADAMQLT
LGKIGRVQQVYHDNDLKVEVGNTSWTYNPLAVCKVASSTASDGSCAPVIP
SSERLSAILKKLFEPNVSGDATEEFVKAAANGFAARCEEYLAGAAQPSTS
SASPSSGPDVNVNGVFAGHTALQAASQNGHIEVIQVLLRHAVDVEIEDKD
GDRAVHHAAFGDEAAVIEILAKAGADLNARNKRRQTSLHIAVNKGHLNVV
KTLLTLGCHPSLQDSEGDTPLHDAISKEHDEMLSLLLDFGADITLNNNNG
FNALHHAALKGNPSAMKILLTKTNRPWIVEEKKDDGYTALHLAALNNHVE
IAELLVHMGKANMDRQNVNLQTALHLAVERQHVQIVKLLVQDGADLNIPD
KDGDTPLHEALRHHTLSQLKQLQDVEGFGKLLMGLRNANNKKASASIACF
LAANGADLTLKNRKQQTPLDLCPDPNLCKTLVKCYNERKTDDSELPGNVA
GTSSSARARAASGSLNQSSSVNMPLSSLAASSTFPAASSSSIFALNGIAN
EMSQSLHEDPPKSSASLDECLVCSDAKRDTVFKPCGHVSCCETCAPRVKK
CLICRETVSSREKIDECLVCSDRRAAVFFRPCGHMVACEHCSALMKKCVL
CRTQIDEILSFSLCCGGSGRPEKVSVAAGAMATVGLPLPDDRFMEAAAAA
ACANASGHSVAMNNTVVTPVAGSSNQLNSQNNLLAAAAASSNVSNLSAAG
NAMVAPSNVNNFQMDDVQKLKQQLQDIKEQTMCPVCFDRIKNMVFLCGHG
TCQMCGDQIEGCPICRKTVEKRILLFASFLDH
BO18064.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:03:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mib1-PA | 1226 | CG5841-PA | 1..1226 | 1..1226 | 6439 | 100 | Plus |
| mib1-PB | 1115 | CG5841-PB | 13..1115 | 124..1226 | 5806 | 100 | Plus |
| mib2-PC | 1049 | CG17492-PC | 8..1042 | 109..1055 | 1448 | 35 | Plus |
| mib2-PB | 1049 | CG17492-PB | 8..1042 | 109..1055 | 1448 | 35 | Plus |
| mib2-PA | 1049 | CG17492-PA | 8..1042 | 109..1055 | 1448 | 35 | Plus |
