Clone BO18067 Report

Search the DGRC for BO18067

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:180
Well:67
Vector:pDNR-Dual
Associated Gene/TranscriptCG6695-RA
Protein status:BO18067.pep: Imported from assembly
Sequenced Size:2917

Clone Sequence Records

BO18067.3prime Sequence

808 bp (775 high quality bases) assembled on 2006-10-13

> BO18067.3prime
ATGGTCTAGAAAGCTTGCATAGTCAACCAGTTTCTTGAGCTTTGGCGGGG
CGGAGATGACGACGCGTCCTCGATTCGAAGAACCACTGCCGCCATGGCCG
TAATCCGCCTCCCGGTCGCGATCACGACCACGCAACCGTTCGTTCTGCTG
CTGATGCTGTTGCCTGTACTGTTCCCGCTCGCGATTCCGCTCAATGCTGC
GGTCCCGCTGCCTCCGCCGCCTGGACTGACTCCTCCGGCTGCGGGAACGG
CGCCGATCACGGCTGCCACTGCGCCGTCGACTGTGGGAACGTCGCTTCCG
CTCCACGCGACTTCCGCTTCGGGAGCGCGAACGCTGCCTACGATTGTACT
TTGGACTGGGCGTCCTTGTGCGTCTCCTCCTTTCCGTTCGGCTGCTGCTC
CGTCTGCTGTGCTGTGTTTCCGGCGGTGGCGACCGCCTACGACTCTCCGA
TCTGCTGCGACTGCGACGCGTCGACGACTTTGCCAGCTGGCTTTCCGATG
CCACAGATTCGGCATCGCTGTCCGAGAGCTTTCCACTCGAGGGCGTTCCA
TATTTGTGACGCAGCTCACGGCGCCTTCTGCGCAGCTTGAGGGCCAGTTC
GCGCATCTCATCCTCGCGTTCCTGCTGTTGCAGTCGTTCACGCTCGGTCT
TTTCGATTTCCGCACGCTTATCGGCTTTATATTGCCGGTTCAAAAGGTTC
TGCATCTTTCTCTTAAGCCGCTCGCGCAGATTGGGCCGTCCGCCACCGCC
AGAACTCGGATGTCCGGAGCCTTTGGTTTCGGTAGCGGAACTATATTTGC
CTGTTTGA

BO18067.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:49:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG6695-PA 2886 CG6695-RA 2094..2883 808..19 3950 100 Minus
CG6695-PB 2148 CG6695-RB 2090..2148 771..713 295 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:48:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG6695-RA 3170 CG6695-RA 2218..3007 808..19 3950 100 Minus
CG6695-RB 3129 CG6695-RB 2214..2966 771..19 3765 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:48:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24658659..24659216 576..19 2790 100 Minus
3R 32079331 3R 24658499..24658605 680..574 535 100 Minus
3R 32079331 3R 24658321..24658415 771..677 460 98.9 Minus
3R 32079331 3R 24657573..24657610 808..771 190 100 Minus
Blast to na_te.dros performed 2015-02-12 16:48:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6794..6898 241..136 112 59.8 Minus
roo 9092 roo DM_ROO 9092bp 1043..1095 195..143 112 67.9 Minus

BO18067.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:51 Download gff for BO18067.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6695-PA 2095..2886 16..807 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:03:49 Download gff for BO18067.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6695-RA 2219..3007 19..807 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:33:47 Download gff for BO18067.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6695-RA 2219..3007 19..807 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:33:47 Download gff for BO18067.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 24657574..24657609 772..807 100 -> Minus
3R 24658321..24658411 681..771 100 -> Minus
3R 24658499..24658604 575..680 100 -> Minus
3R 24658661..24659216 19..574 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:03:49 Download gff for BO18067.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20483296..20483331 772..807 100 -> Minus
arm_3R 20484043..20484133 681..771 100 -> Minus
arm_3R 20484221..20484326 575..680 100 -> Minus
arm_3R 20484383..20484938 19..574 100   Minus

BO18067.5prime Sequence

884 bp (826 high quality bases) assembled on 2006-10-13

> BO18067.5prime
GAAGTTATCAGTCGACATGTGGCACGAGGCGAGGAAACAGGAGCGCAAGA
TCCGTGGCCTGATCGTCGATTACCGCAAGAGGGCGGAGCGGCGGCAGTAC
TTCTACGACAAAATTCAGGCAGATCCCACCCAGTTTCTGCAACTGCATGG
CCGGCGAAGCAAGATCTACTTGGATCCCGCGGTGGCCGCCGCCGGCGATG
GAGCCGCAATCATTGTGCCTTGGCAGGGTCAGCAGGACAACCTCATCGAC
CGCTTCGATGTACGCGCCCATTTGGATCACATTCCTCCCGTGAACAAGAC
CAACGCCGAGGGGGCGGATGGTGACTCCGAACTGACCCTCGAGGAGCGTC
AGCTAAACTACGAGCGCTATCGCATCCTGGCGCAAAATGACTTCCTCAAC
GTCAGCGAGGATAAGTTTCTGCACCAACTCTACCTGGAGGAACAGTTTGG
GGCCAATGCCCAACTGGAGGCGGAACGGAATCTGGCCAAAAAGAAGCAGA
AGACGGGAGGAGCCACAATTGGCTACTCCTACGAAGATACCGGCGATGGA
GCGACTATTGGACCTCAGCCTTTTGGAGCCGCCAGTTCAACTGTCATTGG
TGGAGCGGCAGCTGTTGCGAAGGGTGAAAAGGGGGATGGCAGTGAAGAAT
CGGATTCTGACATCGATATGGATGTGTCGATAGACATCGGCAAGCTGGAC
ACCTCGCAAGCCCATGAGCTTAACGCCTGCGGGCGCAACTACGGCATGAA
AAGCAACGACTTCTTCTCACACCTCACTAAGGATGCTGACGAGGCGGATG
CCCTGCGCATTGCGCGCGAGGAGGAGCANGAGAAGATGCTGCTGAGCGGG
CGCAAGTCAAGACGCGAGCGTCGGGCGCAAAGGA

BO18067.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:49:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG6695-PB 2148 CG6695-RB 1..865 17..881 4306 99.8 Plus
CG6695-PA 2886 CG6695-RA 1..865 17..881 4306 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:43:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG6695-RA 3170 CG6695-RA 125..989 17..881 4314 99.9 Plus
CG6695-RB 3129 CG6695-RB 125..989 17..881 4314 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:42:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24655572..24656239 214..881 3329 99.9 Plus
3R 32079331 3R 24655284..24655480 17..213 985 100 Plus
Blast to na_te.dros performed on 2015-02-11 18:42:59 has no hits.

BO18067.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:51 Download gff for BO18067.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6695-PA 1..867 17..883 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 02:56:38 Download gff for BO18067.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6695-RB 117..991 10..883 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:38:04 Download gff for BO18067.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6695-RB 117..991 10..883 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:38:04 Download gff for BO18067.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24655276..24655480 10..213 98 -> Plus
3R 24655572..24656241 214..883 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 02:56:38 Download gff for BO18067.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20480998..20481202 10..213 98 -> Plus
arm_3R 20481294..20481963 214..883 99   Plus

BO18067.complete Sequence

2917 bp assembled on 2010-05-05

GenBank Submission: KX794199

> BO18067.complete
GAAGTTATCAGTCGACATGTGGCACGAGGCGAGGAAACAGGAGCGCAAGA
TCCGTGGCCTGATCGTCGATTACCGCAAGAGGGCGGAGCGGCGGCAGTAC
TTCTACGACAAAATTCAGGCAGATCCCACCCAGTTTCTGCAACTGCATGG
CCGGCGAAGCAAGATCTACTTGGATCCCGCGGTGGCCGCCGCCGGCGATG
GAGCCGCAATCATTGTGCCTTGGCAGGGTCAGCAGGACAACCTCATCGAC
CGCTTCGATGTACGCGCCCATTTGGATCACATTCCTCCCGTGAACAAGAC
CAACGCCGAGGGGGCGGATGGTGACTCCGAACTGACCCTCGAGGAGCGTC
AGCTAAACTACGAGCGCTATCGCATCCTGGCGCAAAATGACTTCCTCAAC
GTCAGCGAGGATAAGTTTCTGCACCAACTCTACCTGGAGGAACAGTTTGG
GGCCAATGCCCAACTGGAGGCGGAACGGAATCTGGCCAAAAAGAAGCAGA
AGACGGGAGGAGCCACAATTGGCTACTCCTACGAAGATACCGGCGATGGA
GCGACTATTGGACCTCAGCCTTTTGGAGCCGCCAGTTCAACTGTCATTGG
TGGAGCGGCAGCTGTTGCGAAGGGTGAAAAGGGGGATGGCAGTGAAGAAT
CGGATTCTGACATCGATATGGATGTGTCGATAGACATCGGCAAGCTGGAC
ACCTCGCAAGCCCATGAGCTTAACGCCTGCGGGCGCAACTACGGCATGAA
AAGCAACGACTTCTTCTCACACCTCACTAAGGATGCTGACGAGGCGGATG
CCCTGCGCATTGCGCGCGAGGAGGAGCAGGAGAAGATGCTGCTGAGCGGG
CGCAAGTCAAGACGCGAGCGTCGGGCGCAAAAGGAGAGAAGGATCGCCAA
TAGACCATTCAGTCCGCCAAGCTATGCTGCCAAGGAGGATAAGGACAAAA
AAGGTGGTGGTAAGGGCGGTGAGAAAGAAAAGGAGGAGGACAGCGAATCG
CGTTCGCCGTCGCCCGCGGAAGCAGGTCCCGAGAAGATAACCTACATTAC
CTCGTTTGGGGGCGAGGACGAAATGCAGCCGCACTCCAAGATCACCATCA
GCCTGACGAAGCCTGGTCTGACCCTGGGTGAATCGTGCATCAATGCCAGT
AGCGGAGCGGCGATTGCCGCCGCCGCAGCATCTTCGGTTTCCTATGCTCA
AAAGGTGAAAGATAATCTGGACAAGTTGAAAGTGATGAATGAGTCGTCCA
AGCGCAACAGACGTCGATCCCGCTCGCACTCCCGCTCTCGTTCTAGGAGT
GCCACAGTCTCAAGGAGTCGGAGTGGTAGTCGTCGGAGTGGCAGTCGTCG
TAGAAGTCGCCGCAGTAGAAGCTATCACAGAAGGAGCAGGACGCGTTCAC
GTCGCCGACGAAGGTACTACTCTAGATCAAGATCCAGGTCGAGATCAAGA
TCCCGTTCGCTGTCAAGATCCAGATCCAGATCCCGCAGTCGATCGCGATC
CGGTTCCTGGAAACGCTACAAGGCGCGCAGTCCAAGCTACAAGCGCTCTA
GGAAGCGCTACTCCTATTCCTCTCGCAGCTCCAGTGGCAGCTCATACAGG
CGAAGAAGTCGCTCCCGATCCCCCTCAAACCGAAGGAGTCGCGTCAAAAA
GAAGACCACACCTCCGCCAGTGGCGACCGTGGGTGGTTATTGCCTGAACA
CCACCACGACTACAACTACATCCACTGTAACGGCGGTAAAGATGTTCCAA
CAGCAGCAGCAGCAGCCGCCGGCCAAAGCAACGCCGCCCATGATCAGCTA
TCCAATACCTGCGCGAATGCTCAATGTAAACCAAGCACTCACAGCTACCG
CACCCGTTGCTGTGCAACCACAAGTGGTAGAGCCACCACCACCGCCACTG
AAACGCTACTATGGACGAAAAAGAGGCAACGATACCTCGTCCTCATCTTC
GTCGGGAGCGGAGAACAGCGAAGGCAGCGACAACGAGGAGCAGCAACAGC
CACAGTTGGGAAAGCGAGCTGAGGACTCCGATGATATGGAATTGGACACT
GCGTCGGAGCGTTCACACGCCCTCCAGCCGACCATGTCGTCTTCGAGCAG
CACGGGTAATCAAACAGGCAAATATAGTTCCGCTACCGAAACCAAAGGCT
CCGGACATCCGAGTTCTGGCGGTGGCGGACGGCCCAATCTGCGCGAGCGG
CTTAAGAGAAAGATGCAGAACCTTTTGAACCGGCAATATAAAGCCGATAA
GCGTGCGGAAATCGAAAAGACCGAGCGTGAACGACTGCAACAGCAGGAAC
GCGAGGATGAGATGCGCGAACTGGCCCTCAAGCTGCGCAGAAGGCGCCGT
GAGCTGCGTCACAAATATGGAACGCCCTCGAGTGGAAAGCTCTCGGACAG
CGATGCCGAATCTGTGGCATCGGAAAGCCAGCTGGCAAAGTCGTCGACGC
GTCGCAGTCGCAGCAGATCGGAGAGTCGTAGGCGGTCGCCACCGCCGGAA
ACACAGCACAGCAGACGGAGCAGCAGCCGAACGGAAAGGAGGAGACGCAC
AAGGACGCCCAGTCCAAAGTACAATCGTAGGCAGCGTTCGCGCTCCCGAA
GCGGAAGTCGCGTGGAGCGGAAGCGACGTTCCCACAGTCGACGGCGCAGT
GGCAGCCGTGATCGGCGCCGTTCCCGCAGCCGGAGGAGTCAGTCCAGGCG
GCGGAGGCAGCGGGACCGCAGCATTGAGCGGAATCGCGAGCGGGAACAGT
ACAGGCAACAGCATCAGCAGCAGAACGAACGGTTGCGTGGTCGTGATCGC
GACCGGGAGGCGGATTACGGCCATGGCGGCAGTGGTTCTTCGAATCGAGG
ACGCGTCGTCATCTCCGCCCCGCCAAAGCTCAAGAAACTGGTTGACTATG
CAAGCTTTCTAGACCAT

BO18067.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:32:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG6695-RA 2886 CG6695-PA 1..2883 17..2899 14415 100 Plus
CG6695-RB 2148 CG6695-PB 1..2090 17..2106 10450 100 Plus
CG6695-RB 2148 CG6695-PB 2090..2148 2147..2205 295 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:32:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG6695-RA 3170 CG6695-RA 125..3007 17..2899 14415 100 Plus
CG6695-RB 3129 CG6695-RB 125..2214 17..2106 10450 100 Plus
CG6695-RB 3129 CG6695-RB 2214..2966 2147..2899 3765 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:32:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24655572..24657412 214..2054 9205 100 Plus
3R 32079331 3R 24658659..24659216 2342..2899 2790 100 Plus
3R 32079331 3R 24655284..24655480 17..213 985 100 Plus
3R 32079331 3R 24658499..24658605 2238..2344 535 100 Plus
3R 32079331 3R 24657516..24657610 2053..2147 475 100 Plus
3R 32079331 3R 24658321..24658415 2147..2241 460 98.9 Plus
Blast to na_te.dros performed on 2014-11-28 02:32:29 has no hits.

BO18067.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-05 18:40:17 Download gff for BO18067.complete
Subject Subject Range Query Range Percent Splice Strand
CG6695-RA 123..3005 17..2901 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:21:50 Download gff for BO18067.complete
Subject Subject Range Query Range Percent Splice Strand
CG6695-RA 125..3007 17..2901 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:31:18 Download gff for BO18067.complete
Subject Subject Range Query Range Percent Splice Strand
CG6695-RA 125..3007 17..2901 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:31:18 Download gff for BO18067.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24655284..24655480 17..213 100 -> Plus
3R 24655572..24657410 214..2052 100 -> Plus
3R 24657516..24657609 2053..2146 100 -> Plus
3R 24658321..24658411 2147..2237 100 -> Plus
3R 24658499..24658604 2238..2343 100 -> Plus
3R 24658661..24659216 2344..2901 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:21:50 Download gff for BO18067.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20484221..20484326 2238..2343 100 -> Plus
arm_3R 20481006..20481202 17..213 100 -> Plus
arm_3R 20481294..20483132 214..2052 100 -> Plus
arm_3R 20483238..20483331 2053..2146 100 -> Plus
arm_3R 20484043..20484133 2147..2237 100 -> Plus
arm_3R 20484383..20484938 2344..2901 99   Plus

BO18067.pep Sequence

Translation from 16 to 2917

> BO18067.pep
MWHEARKQERKIRGLIVDYRKRAERRQYFYDKIQADPTQFLQLHGRRSKI
YLDPAVAAAGDGAAIIVPWQGQQDNLIDRFDVRAHLDHIPPVNKTNAEGA
DGDSELTLEERQLNYERYRILAQNDFLNVSEDKFLHQLYLEEQFGANAQL
EAERNLAKKKQKTGGATIGYSYEDTGDGATIGPQPFGAASSTVIGGAAAV
AKGEKGDGSEESDSDIDMDVSIDIGKLDTSQAHELNACGRNYGMKSNDFF
SHLTKDADEADALRIAREEEQEKMLLSGRKSRRERRAQKERRIANRPFSP
PSYAAKEDKDKKGGGKGGEKEKEEDSESRSPSPAEAGPEKITYITSFGGE
DEMQPHSKITISLTKPGLTLGESCINASSGAAIAAAAASSVSYAQKVKDN
LDKLKVMNESSKRNRRRSRSHSRSRSRSATVSRSRSGSRRSGSRRRSRRS
RSYHRRSRTRSRRRRRYYSRSRSRSRSRSRSLSRSRSRSRSRSRSGSWKR
YKARSPSYKRSRKRYSYSSRSSSGSSYRRRSRSRSPSNRRSRVKKKTTPP
PVATVGGYCLNTTTTTTTSTVTAVKMFQQQQQQPPAKATPPMISYPIPAR
MLNVNQALTATAPVAVQPQVVEPPPPPLKRYYGRKRGNDTSSSSSSGAEN
SEGSDNEEQQQPQLGKRAEDSDDMELDTASERSHALQPTMSSSSSTGNQT
GKYSSATETKGSGHPSSGGGGRPNLRERLKRKMQNLLNRQYKADKRAEIE
KTERERLQQQEREDEMRELALKLRRRRRELRHKYGTPSSGKLSDSDAESV
ASESQLAKSSTRRSRSRSESRRRSPPPETQHSRRSSSRTERRRRTRTPSP
KYNRRQRSRSRSGSRVERKRRSHSRRRSGSRDRRRSRSRRSQSRRRRQRD
RSIERNREREQYRQQHQQQNERLRGRDRDREADYGHGGSGSSNRGRVVIS
APPKLKKLVDYASFLDH

BO18067.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:09:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG6695-PA 961 CG6695-PA 1..961 1..961 4881 100 Plus
CG6695-PB 715 CG6695-PB 1..703 1..703 3553 99.3 Plus
CG7971-PG 1062 CG7971-PG 481..1062 402..897 283 25 Plus
CG7971-PA 1062 CG7971-PA 481..1062 402..897 283 25 Plus
CG7971-PC 1107 CG7971-PC 481..1050 402..907 282 25 Plus
CG7971-PG 1062 CG7971-PG 186..621 472..933 234 22.1 Plus
CG7971-PA 1062 CG7971-PA 186..621 472..933 234 22.1 Plus
CG7971-PG 1062 CG7971-PG 260..574 629..946 211 22.1 Plus
CG7971-PA 1062 CG7971-PA 260..574 629..946 211 22.1 Plus
CG7971-PG 1062 CG7971-PG 252..919 255..910 204 20.7 Plus
CG7971-PA 1062 CG7971-PA 252..919 255..910 204 20.7 Plus
CG7971-PG 1062 CG7971-PG 214..511 246..549 202 23.9 Plus
CG7971-PA 1062 CG7971-PA 214..511 246..549 202 23.9 Plus
CG7971-PG 1062 CG7971-PG 174..461 642..933 191 22.6 Plus
CG7971-PA 1062 CG7971-PA 174..461 642..933 191 22.6 Plus
CG7971-PG 1062 CG7971-PG 146..680 345..874 188 19.6 Plus
CG7971-PA 1062 CG7971-PA 146..680 345..874 188 19.6 Plus
CG7971-PG 1062 CG7971-PG 144..449 652..933 187 23.1 Plus
CG7971-PA 1062 CG7971-PA 144..449 652..933 187 23.1 Plus
CG6695-PB 715 CG6695-PB 278..549 721..953 167 28.7 Plus