Clone BO18073 Report

Search the DGRC for BO18073

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:180
Well:73
Vector:pDNR-Dual
Associated Gene/TranscriptCG8202-RA
Protein status:BO18073.pep: validated full length
Sequenced Size:2860

Clone Sequence Records

BO18073.3prime Sequence

917 bp (809 high quality bases) assembled on 2006-10-13

> BO18073.3prime
ATGGTCTAGAAAGCTTGCGCTGCTGCGCACGCGCAGTAGCAGTTTGGCAA
TAGTTTGAGCCCTTATGGGTGATGCATCCTTTATTTGCTTGTATATGATC
TCTACACTGCGCAGAGTTTGGGGTAGTGTTTTCACATCCAATTGTGATTG
TGCCTTGTTAGCTAGGAGCCACAGATTGACTGCCAATTGAGCGATAGTTT
CCCTCTCCAGATCAGCGTACTTTACAATCCTTAAAAAAAGTTCCAGGGCT
AGCTCCGCTTGCGATCTTTGCTGCTGCGCTACTCCCAACGATTTCAGCTG
CAGAAGAATGGCATCAACAACCTGAGCGCACATATTGTTTACCTCCTGCA
AGAATTTGGGGTCGTGGCCATACAAATCGTCATTGGACACCACTCCTTTT
ATATGATAGGGAAACCTTTCCAGACTCTGCACATACAGCATATCGAGGGA
ATGCAGATAGATGATACTCGGCGCTGAGCTGTCAACTTTGAATTTATGTC
TGCCAACCACTTCTAGCAGAAGGCGAAGAAAATAGAGGACACCCTGTTCC
GGACTATCTGGTACCACGATTAATGTGGCCAGGATATTACACATATACGA
GACAAGGAATGGCTCTAAGCTGCGAGGCTTTCCATCAAAGTCCACCGTGG
CAGCGGGCAACTCATTAACCAATTGCAAAGCGGCCTCAAAGCAAGCATCA
GCTTGTCCCAGACAGAGATGCTGCAGAGCCAGCTGTCCGCATAGTAAGTA
CAAATTCATTTGCTGCTGGACAGCTTCAATGCTGGGAATGGTGATGAAGC
AGTAGGCGATGCAGGCCTTAACAAAACCCGTTGATTTCGAACGGTTTCGG
GTGGCTAACTTGCAGGCCGCATGCACCAGAGTAACGTATACTGCGTCCAG
GGTGCTGAACGTGCCCC

BO18073.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:50:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG8202-PA 2829 CG8202-RA 1928..2826 917..19 4470 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:57:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG8202-RA 3092 CG8202-RA 1970..2868 917..19 4480 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:57:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8734808..8735118 703..393 1555 100 Minus
3R 32079331 3R 8735173..8735443 394..124 1355 100 Minus
3R 32079331 3R 8734536..8734751 917..702 1065 99.5 Minus
3R 32079331 3R 8735509..8735613 123..19 525 100 Minus
Blast to na_te.dros performed on 2015-02-10 15:57:18 has no hits.

BO18073.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:56 Download gff for BO18073.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8202-PA 1928..2829 16..917 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:26:04 Download gff for BO18073.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8202-RA 1970..2874 15..917 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:38:41 Download gff for BO18073.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8202-RA 1970..2874 15..917 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:38:41 Download gff for BO18073.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 8735175..8735443 124..392 100 -> Minus
3R 8735509..8735619 15..123 98   Minus
3R 8734810..8735118 393..701 100 -> Minus
3R 8734536..8734751 702..917 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:26:04 Download gff for BO18073.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4560258..4560473 702..917 99 -> Minus
arm_3R 4560532..4560840 393..701 100 -> Minus
arm_3R 4560897..4561165 124..392 100 -> Minus
arm_3R 4561231..4561341 15..123 98   Minus

BO18073.5prime Sequence

935 bp (872 high quality bases) assembled on 2006-10-13

> BO18073.5prime
GAAGTTATCAGTCGACATGGCGAACTTGGAATGGGTGTGCGTGCCGCGAT
GCTACGAGGTCCGGAAGAATTGCCTGACTGGGCAGGCCACGCTGGAGCAT
CCCCTAAAGCAGCGGACGGTGACGGTGGTGGACAGCAATCCCTTGAGCCG
AGCTCTAGAGGGCACAGATCCGCTCTCGCAGTTTGCACGCCAAGATGATG
AGCTCAACGATCCGCTCAGTCAAATGGTCAGCGAATTCGATCTCAAGTCG
AAGCGTCGTGAACGGGACCGAACGGAGCCCGAGGACAACACACTGCAGTG
GAGCAGCCGACGACTAGGCATCCTCAACCGCTTTACAACCAATGAGAAGC
TATCGCTGTCTACCAGCTTTCTGGTGTCATCTGGTAGCCTGGATGGCGGC
AACGAAAGCATTAAAGCACAAACGGTGGTGGCCGACAAGACAAAGTTTCG
CTTGGAGCAGTTAGACCACTTCGACGATGGCAGCATGCGTCACATGATGG
ATCTTACTCAGCAGGAGTACATTCAGCGGTTTGAGCAACTCAAGCAGGAG
CTGATCCAGTCCTGGCACAACGATCAGCGAGTAAAAGCGTTGAAGATAGC
CATACAGTGTGCCAAAATGCTAGCGGACACCACTGTGCTGCAATTCTATC
CGAGTCAGTACGTTCTTATCACTGATATACTGGATGTTTTTGGAAAATTG
GTATACGAACGACTGCGTGCTAAGGCCTCTGGAGATCCTGCCGCATCGGC
GGCCACATTAGAGCGGGAACGGGAAGCTGCCCGGGATACGTGCCAGAATT
GGTTTTATAAGATCGCCTCGATTCGTGAGTTACTGCCGCGTTTTTACTTG
GAGCTGTCAATATTCAAGTGCTACGAGTTCCTGTCATCATCGCGCGAGGA
GTATGAGCGCATTTTGCACCGTTTGACCCATCAAC

BO18073.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:50:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG8202-PA 2829 CG8202-RA 1..919 17..935 4570 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:14:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG8202-RA 3092 CG8202-RA 43..961 17..935 4580 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:14:03
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8732766..8733290 411..935 2610 99.8 Plus
3R 32079331 3R 8732544..8732719 239..414 865 99.4 Plus
3R 32079331 3R 8732369..8732484 124..239 580 100 Plus
3R 32079331 3R 8732215..8732310 33..128 480 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:14:06 has no hits.

BO18073.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:56 Download gff for BO18073.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8202-PA 1..919 17..935 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:51:20 Download gff for BO18073.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8202-RA 39..961 13..935 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:06 Download gff for BO18073.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8202-RA 39..961 13..935 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:06 Download gff for BO18073.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 8732216..8732306 34..124 100 -> Plus
3R 8732370..8732483 125..238 100 -> Plus
3R 8732544..8732715 239..410 100 -> Plus
3R 8732766..8733290 411..935 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:51:20 Download gff for BO18073.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4558092..4558205 125..238 100 -> Plus
arm_3R 4557938..4558028 34..124 100 -> Plus
arm_3R 4558266..4558437 239..410 100 -> Plus
arm_3R 4558488..4559012 411..935 99   Plus

BO18073.complete Sequence

2860 bp assembled on 2006-12-18

GenBank Submission: FJ634306

> BO18073.complete
GAAGTTATCAGTCGACATGGCGAACTTGGAATGGGTGTGCGTGCCGCGAT
GCTACGAGGTCCGGAAGAATTGCCTGACTGGGCAGGCCACGCTGGAGCAT
CCCCTAAAGCAGCGGACGGTGACGGTGGTGGACAGCAATCCCTTGAGCCG
AGCTCTAGAGGGCACAGATCCGCTCTCGCAGTTTGCACGCCAAGATGATG
AGCTCAACGATCCGCTCAGTCAAATGGTCAGCGAATTCGATCTCAAGTCG
AAGCGTCGTGAACGGGACCGAACGGAGCCCGAGGACAACACACTGCAGTG
GAGCAGCCGACGACTAGGCATCCTCAACCGCTTTACAACCAATGAGAAGC
TATCGCTGTCTACCAGCTTTCTGGTGTCATCTGGTAGCCTGGATGGCGGC
AACGAAAGCATTAAAGCACAAACGGTGGTGGCCGACAAGACAAAGTTTCG
CTTGGAGCAGTTAGACCACTTCGACGATGGCAGCATGCGTCACATGATGG
ATCTTACTCAGCAGGAGTACATTCAGCGGTTTGAGCAACTCAAGCAGGAG
CTGATCCAGTCCTGGCACAACGATCAGCGAGTAAAAGCGTTGAAGATAGC
CATACAGTGTGCCAAAATGCTAGCGGACACCACTGTGCTGCAATTCTATC
CGAGTCAGTACGTTCTTATCACTGATATACTGGATGTTTTTGGAAAATTG
GTATACGAACGACTGCGTGCTAAGGCCTCTGGAGATCCTGCCGCATCGGC
GGCCACATTAGAGCGGGAACGGGAAGCTGCCCGGGATACGTGCCAGAATT
GGTTTTATAAGATCGCCTCGATTCGTGAGTTACTGCCGCGTTTTTACTTG
GAGCTGTCAATATTCAAGTGCTACGAGTTCCTGTCATCATCGCGCGAGGA
GTATGAGCGCATTTTGCAACGTTTGACCCATCAACTGAGGGGTATAGCTG
ATCCTTTGGTATCGAGCTATGCCCGCTGCTACTTGGTGCGCATGGGCGTT
ACCCTAACGTCGAGTAAGACATACATAAGAGAGAACTTTGCCGACCTGTT
CCTCATATATCCTCAGATCTTTCGCTTCGTGGCCCGCTTTAATCTGCATC
CGGAAATCGTCACCGCCAGCTCCTACCTACAGCTATATGCCCCAGCCTTT
GACTACATGCTTCTCTGCCTTGTTCACAAAAGCGAACTGCACACCCAGGA
TATTCTTAATGAGTGCAAGCAGTTGAAGAATAATGGTGCTATTCTGATGT
CTGTTTTAAGTTCCTTCAACTCAGAGTTCATTGCAACAAATGCATTAGAG
TTTATAGCGCTAATTAATGCTTCCGAAACGCCCGGAATCTCCAAGTCCCA
GTTGCTGCGCTCGCTGGGAAGCTGCGTTAGCAGCTGCCCTCCTCTACAGG
AGCAGCGTGTAACTTTTCTGAAGGCTGCCTTCGAGACGATCAACAAGTTG
ACTGATCCAAATGAGTATATAAACTGTGTGGAAACATGGGCTGTCTTTGT
ATCACAGTATTTTACGATACACGAGGTAAACAGATTGCTAGGAGAACTGA
ATACGCGAATGTGTCTTGGCAAAGCCTATGAAAAGCACTATTCCCAATTG
CAAAACATTCTTACCCGGATAATGCAAAACTATCGCAGCATTGAGCTTCT
GCTGATACAGCCCAACTTTCTGCCCTACTTGGATCTCTTTCAAAAGGAGT
CGGTGCGGGTCGAGGTTTGCAAAAACATTCTCAGTTTCTACAAACAGAAT
AGTGACGAATATACTTGCGACGCTGTGGTAACAAACGCATTGATGTATCT
CGGGAAGATCTTGAACGATTCAGTGAATGCCCTGTCCGTGGATGATGAAC
GTCGTCAGATAGCTCAGCTCATCAATGTCTTTATTCACAAAGTTCACTTT
GGAAATGACTTGGAGCAGCAGCTAAGTTTTTATGTGGAGGCGCGGGGCAC
GTTCAGCAACCTGGACGCAGTATACGTTACTCTGGTGCATGCGGCCTGCA
AGTTAGCCACCCGAAACCGTTCGAAATCAACGGGTTTTGTTAAGGCCTGC
ATCGCCTACTGCTTCATCACCATTCCCAGCATTGAAGCTGTCCAGCAGCA
AATGAATTTGTACTTACTATGCGGACAGCTGGCTCTGCAGCATCTCTGTC
TGGGACAAGCTGATGCTTGCTTTGAGGCCGCTTTGCAATTGGTTAATGAG
TTGCCCGCTGCCACGGTGGACTTTGATGGAAAGCCTCGCAGCTTAGAGCC
ATTCCTTGTCTCGTATATGTGTAATATCCTGGCCACATTAATCGTGGTAC
CAGATAGTCCGGAACAGGGTGTCCTCTATTTTCTTCGCCTTCTGCTAGAA
GTGGTTGGCAGACATAAATTCAAAGTTGACAGCTCAGCGCCGAGTATCAT
CTATCTGCATTCCCTCGATATGCTGTATGTGCAGAGTCTGGAAAGGTTTC
CCTATCATATAAAAGGAGTGGTGTCCAATGACGATTTGTATGGCCACGAC
CCCAAATTCTTGCAGGAGGTAAACAATATGTGCGCTCAGGTTGTTGATGC
CATTCTTCTGCAGCTGAAATCGTTGGGAGTAGCGCAGCAGCAAAGATCGC
AAGCGGAGCTAGCCCTGGAACTTTTTTTAAGGATTGTAAAGTACGCTGAT
CTGGAGAGGGAAACTATCGCTCAATTGGCAGTCAATCTGTGGCTCCTAGC
TAACAAGGCACAATCACAATTGGATGTGAAAACACTACCCCAAACTCTGC
GCAGTGTAGAGATCATATACAAGCAAATAAAGGATGCATCACCCATAAGG
GCTCAAACTATTGCCAAACTGCTACTGCGCGTGCGCAGCAGCGCAAGCTT
TCTAGACCAT

BO18073.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:18:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG8202-RA 2829 CG8202-PA 1..2826 17..2842 14130 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:18:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG8202-RA 3092 CG8202-RA 43..2868 17..2842 14130 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:17:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8732766..8733421 411..1066 3280 100 Plus
3R 32079331 3R 8734420..8734751 1828..2159 1660 100 Plus
3R 32079331 3R 8734047..8734358 1516..1827 1560 100 Plus
3R 32079331 3R 8734808..8735118 2158..2468 1555 100 Plus
3R 32079331 3R 8733708..8733990 1234..1516 1415 100 Plus
3R 32079331 3R 8735173..8735443 2467..2737 1355 100 Plus
3R 32079331 3R 8732544..8732719 239..414 865 99.4 Plus
3R 32079331 3R 8733480..8733648 1065..1233 845 100 Plus
3R 32079331 3R 8732369..8732484 124..239 580 100 Plus
3R 32079331 3R 8735509..8735613 2738..2842 525 100 Plus
3R 32079331 3R 8732215..8732310 33..128 480 100 Plus
Blast to na_te.dros performed on 2014-11-27 01:18:01 has no hits.

BO18073.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:12:54 Download gff for BO18073.complete
Subject Subject Range Query Range Percent Splice Strand
CG8202-RA 1..2829 17..2845 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:31:24 Download gff for BO18073.complete
Subject Subject Range Query Range Percent Splice Strand
CG8202-RA 33..2868 13..2846 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:50:34 Download gff for BO18073.complete
Subject Subject Range Query Range Percent Splice Strand
CG8202-RA 43..2868 17..2844 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:12:55 Download gff for BO18073.complete
Subject Subject Range Query Range Percent Splice Strand
CG8202-RA 33..2868 13..2846 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:22:53 Download gff for BO18073.complete
Subject Subject Range Query Range Percent Splice Strand
CG8202-RA 43..2868 17..2844 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:22:53 Download gff for BO18073.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8732133..8732149 17..33 100 -> Plus
3R 8732216..8732306 34..124 100 -> Plus
3R 8732370..8732483 125..238 100 -> Plus
3R 8732544..8732715 239..410 100 -> Plus
3R 8732766..8733421 411..1066 100 -> Plus
3R 8733482..8733648 1067..1233 100 -> Plus
3R 8733708..8733990 1234..1516 100 -> Plus
3R 8734048..8734358 1517..1827 100 -> Plus
3R 8734420..8734751 1828..2159 100 -> Plus
3R 8734810..8735118 2160..2468 100 -> Plus
3R 8735175..8735443 2469..2737 100 -> Plus
3R 8735509..8735613 2738..2844 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:50:34 Download gff for BO18073.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4557855..4557871 17..33 100 -> Plus
arm_3R 4557938..4558028 34..124 100 -> Plus
arm_3R 4558092..4558205 125..238 100 -> Plus
arm_3R 4558266..4558437 239..410 100 -> Plus
arm_3R 4558488..4559143 411..1066 100 -> Plus
arm_3R 4559204..4559370 1067..1233 100 -> Plus
arm_3R 4559430..4559712 1234..1516 100 -> Plus
arm_3R 4559770..4560080 1517..1827 100 -> Plus
arm_3R 4560142..4560473 1828..2159 100 -> Plus
arm_3R 4560532..4560840 2160..2468 100 -> Plus
arm_3R 4560897..4561165 2469..2737 100 -> Plus
arm_3R 4561231..4561335 2738..2844 98   Plus

BO18073.pep Sequence

Translation from 16 to 2860

> BO18073.pep
MANLEWVCVPRCYEVRKNCLTGQATLEHPLKQRTVTVVDSNPLSRALEGT
DPLSQFARQDDELNDPLSQMVSEFDLKSKRRERDRTEPEDNTLQWSSRRL
GILNRFTTNEKLSLSTSFLVSSGSLDGGNESIKAQTVVADKTKFRLEQLD
HFDDGSMRHMMDLTQQEYIQRFEQLKQELIQSWHNDQRVKALKIAIQCAK
MLADTTVLQFYPSQYVLITDILDVFGKLVYERLRAKASGDPAASAATLER
EREAARDTCQNWFYKIASIRELLPRFYLELSIFKCYEFLSSSREEYERIL
QRLTHQLRGIADPLVSSYARCYLVRMGVTLTSSKTYIRENFADLFLIYPQ
IFRFVARFNLHPEIVTASSYLQLYAPAFDYMLLCLVHKSELHTQDILNEC
KQLKNNGAILMSVLSSFNSEFIATNALEFIALINASETPGISKSQLLRSL
GSCVSSCPPLQEQRVTFLKAAFETINKLTDPNEYINCVETWAVFVSQYFT
IHEVNRLLGELNTRMCLGKAYEKHYSQLQNILTRIMQNYRSIELLLIQPN
FLPYLDLFQKESVRVEVCKNILSFYKQNSDEYTCDAVVTNALMYLGKILN
DSVNALSVDDERRQIAQLINVFIHKVHFGNDLEQQLSFYVEARGTFSNLD
AVYVTLVHAACKLATRNRSKSTGFVKACIAYCFITIPSIEAVQQQMNLYL
LCGQLALQHLCLGQADACFEAALQLVNELPAATVDFDGKPRSLEPFLVSY
MCNILATLIVVPDSPEQGVLYFLRLLLEVVGRHKFKVDSSAPSIIYLHSL
DMLYVQSLERFPYHIKGVVSNDDLYGHDPKFLQEVNNMCAQVVDAILLQL
KSLGVAQQQRSQAELALELFLRIVKYADLERETIAQLAVNLWLLANKAQS
QLDVKTLPQTLRSVEIIYKQIKDASPIRAQTIAKLLLRVRSSASFLDH

BO18073.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:29:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG8202-PA 942 CG8202-PA 1..942 1..942 4800 100 Plus