Clone BO18074 Report

Search the DGRC for BO18074

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:180
Well:74
Vector:pDNR-Dual
Associated Gene/Transcriptferrochelatase-RB
Protein status:BO18074.pep: validated full length
Sequenced Size:712

Clone Sequence Records

BO18074.3prime Sequence

710 bp (703 high quality bases) assembled on 2006-10-13

> BO18074.3prime
ATGGTCTAGAAAGCTTGCGTTCGAGCAGAGCTGGCGGTACCAGCTTTTGC
TCTCCCTGCACTTTGGATTGGAGCACATGGGACAACGCATGAGGAACTTG
GGGTTGACTGCCTGCTGGGACTTCAGGTGGTCTGCCACAACGTTTGTCAG
GGCGTCGATGAACAGCGGGTGGTCGTTGGGGGTTGCAGCTCGACGGATTT
CCTCTACGCCTACCTCCTTGGCCAGTTCGTCGCAGTACTCGATGTCGAGC
TCATGCAGCGTCTCGATGTGCTCGTTCACGAAGGCAATGGGCACAAGGAT
GAAGTTCTTCAGGCCTTGCTTAACATAGCCCTTAATGGCATCATCAGTTG
CGGGCGCCAGCCAGGGTAGCGGGCCCACCTTGGATTGCCATGCCAGGCTG
TAGGGATTCGTCTGACCAAGTTCCTGCATCACCATGTGTACGCTAGCACC
AATCTCCGAGGGATACGCGTCACCCCGGTTCACAGCCTTAAGGGGAAGGG
AGTGGGCAGTGAAGAGGATGACCACATCATTTCGTTTCGTTTCCACAAAT
TTGGCCAGCTCGTCGCGAATTCGCTGGGCAAACGTTTTGATTAGAAGTGG
ATGAGTGCCCCACCTGTCGATAATGCTCCATTTGATATCCGAGGGCAGAT
TACTAAAGAGGTAGAGGGGATCAAATAAATAGCTGCAATTGTGCATGTCG
ACTGAAAACT

BO18074.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG2098-PB 681 ferrochelatase-RB 1..678 696..19 3390 100 Minus
CG2098-PA 1155 ferrochelatase-RA 519..1152 652..19 3170 100 Minus
CG2098-PC 846 ferrochelatase-RC 519..841 652..330 1615 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:42:37
Subject Length Description Subject Range Query Range Score Percent Strand
FeCH-RB 1338 CG2098-RB 492..1169 696..19 3390 100 Minus
FeCH-RA 1407 CG2098-RA 605..1238 652..19 3170 100 Minus
FeCH-RC 1466 CG2098-RC 605..927 652..330 1615 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:42:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31810999..31811365 330..696 1835 100 Plus
3R 32079331 3R 31810629..31810942 19..332 1570 100 Plus
Blast to na_te.dros performed on 2015-02-12 17:42:35 has no hits.

BO18074.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:57 Download gff for BO18074.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2098-PB 1..681 15..696 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:40:40 Download gff for BO18074.3prime
Subject Subject Range Query Range Percent Splice Strand
FeCH-RB 489..1174 13..699 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:54:17 Download gff for BO18074.3prime
Subject Subject Range Query Range Percent Splice Strand
FeCH-RB 489..1174 13..699 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:54:17 Download gff for BO18074.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 31810624..31810940 13..330 99 <- Plus
3R 31811000..31811368 331..699 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:40:40 Download gff for BO18074.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27636346..27636662 13..330 99 <- Plus
arm_3R 27636722..27637090 331..699 99   Plus

BO18074.5prime Sequence

710 bp (710 high quality bases) assembled on 2006-10-13

> BO18074.5prime
GAAGTTATCAGTCGACATGCACAATTGCAGCTATTTATTTGATCCCCTCT
ACCTCTTTAGTAATCTGCCCTCGGATATCAAATGGAGCATTATCGACAGG
TGGGGCACTCATCCACTTCTAATCAAAACGTTTGCCCAGCGAATTCGCGA
CGAGCTGGCCAAATTTGTGGAAACGAAACGAAATGATGTGGTCATCCTCT
TCACTGCCCACTCCCTTCCCCTTAAGGCTGTGAACCGGGGTGACGCGTAT
CCCTCGGAGATTGGTGCTAGCGTACACATGGTGATGCAGGAACTTGGTCA
GACGAATCCCTACAGCCTGGCATGGCAATCCAAGGTGGGCCCGCTACCCT
GGCTGGCGCCCGCAACTGATGATGCCATTAAGGGCTATGTTAAGCAAGGC
CTGAAGAACTTCATCCTTGTGCCCATTGCCTTCGTGAACGAGCACATCGA
GACGCTGCATGAGCTCGACATCGAGTACTGCGACGAACTGGCCAAGGAGG
TAGGCGTAGAGGAAATCCGTCGAGCTGCAACCCCCAACGACCACCCGCTG
TTCATCGACGCCCTGACAAACGTTGTGGCAGACCACCTGAAGTCCCAGCA
GGCAGTCAACCCCAAGTTCCTCATGCGTTGTCCCATGTGCTCCAATCCAA
AGTGCAGGGAGAGCAAAAGCTGGTACCGCCAGCTCTGCTCGAACGCAAGC
TTTCTAGACC

BO18074.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG2098-PB 681 ferrochelatase-RB 1..678 17..694 3390 100 Plus
CG2098-PA 1155 ferrochelatase-RA 519..1152 61..694 3170 100 Plus
CG2098-PC 846 ferrochelatase-RC 519..841 61..383 1615 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:13:57
Subject Length Description Subject Range Query Range Score Percent Strand
FeCH-RB 1338 CG2098-RB 492..1169 17..694 3390 100 Plus
FeCH-RA 1407 CG2098-RA 605..1238 61..694 3170 100 Plus
FeCH-RC 1466 CG2098-RC 605..927 61..383 1615 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:13:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31810999..31811365 383..17 1835 100 Minus
3R 32079331 3R 31810629..31810942 694..381 1570 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:13:54 has no hits.

BO18074.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:57 Download gff for BO18074.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2098-PB 1..681 17..698 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:10:47 Download gff for BO18074.5prime
Subject Subject Range Query Range Percent Splice Strand
FeCH-RB 489..1174 14..700 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:47:16 Download gff for BO18074.5prime
Subject Subject Range Query Range Percent Splice Strand
FeCH-RB 489..1174 14..700 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:47:16 Download gff for BO18074.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 31810624..31810940 383..700 99 <- Minus
3R 31811000..31811368 14..382 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:10:47 Download gff for BO18074.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27636346..27636662 383..700 99 <- Minus
arm_3R 27636722..27637090 14..382 99   Minus

BO18074.complete Sequence

712 bp assembled on 2006-10-11

GenBank Submission: FJ634307

> BO18074.complete
GAAGTTATCAGTCGACATGCACAATTGCAGCTATTTATTTGATCCCCTCT
ACCTCTTTAGTAATCTGCCCTCGGATATCAAATGGAGCATTATCGACAGG
TGGGGCACTCATCCACTTCTAATCAAAACGTTTGCCCAGCGAATTCGCGA
CGAGCTGGCCAAATTTGTGGAAACGAAACGAAATGATGTGGTCATCCTCT
TCACTGCCCACTCCCTTCCCCTTAAGGCTGTGAACCGGGGTGACGCGTAT
CCCTCGGAGATTGGTGCTAGCGTACACATGGTGATGCAGGAACTTGGTCA
GACGAATCCCTACAGCCTGGCATGGCAATCCAAGGTGGGCCCGCTACCCT
GGCTGGCGCCCGCAACTGATGATGCCATTAAGGGCTATGTTAAGCAAGGC
CTGAAGAACTTCATCCTTGTGCCCATTGCCTTCGTGAACGAGCACATCGA
GACGCTGCATGAGCTCGACATCGAGTACTGCGACGAACTGGCCAAGGAGG
TAGGCGTAGAGGAAATCCGTCGAGCTGCAACCCCCAACGACCACCCGCTG
TTCATCGACGCCCTGACAAACGTTGTGGCAGACCACCTGAAGTCCCAGCA
GGCAGTCAACCCCAAGTTCCTCATGCGTTGTCCCATGTGCTCCAATCCAA
AGTGCAGGGAGAGCAAAAGCTGGTACCGCCAGCTCTGCTCGAACGCAAGC
TTTCTAGACCAT

BO18074.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:15:24
Subject Length Description Subject Range Query Range Score Percent Strand
FeCH-RB 681 CG2098-PB 1..678 17..694 3390 100 Plus
FeCH-RA 1155 CG2098-PA 519..1152 61..694 3170 100 Plus
FeCH-RC 846 CG2098-PC 519..841 61..383 1615 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:15:26
Subject Length Description Subject Range Query Range Score Percent Strand
FeCH-RB 1338 CG2098-RB 492..1169 17..694 3390 100 Plus
FeCH-RA 1407 CG2098-RA 605..1238 61..694 3170 100 Plus
FeCH-RC 1466 CG2098-RC 605..927 61..383 1615 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:15:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31810999..31811365 383..17 1835 100 Minus
3R 32079331 3R 31810629..31810942 694..381 1570 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:15:23 has no hits.

BO18074.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:57 Download gff for BO18074.complete
Subject Subject Range Query Range Percent Splice Strand
ferrochelatase-RB 1..681 17..698 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:41:21 Download gff for BO18074.complete
Subject Subject Range Query Range Percent Splice Strand
ferrochelatase-RB 489..1174 14..700 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:56:40 Download gff for BO18074.complete
Subject Subject Range Query Range Percent Splice Strand
FeCH-RB 492..1169 17..696 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:57 Download gff for BO18074.complete
Subject Subject Range Query Range Percent Splice Strand
ferrochelatase-RB 489..1174 14..700 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:14:09 Download gff for BO18074.complete
Subject Subject Range Query Range Percent Splice Strand
FeCH-RB 492..1169 17..696 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:14:09 Download gff for BO18074.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31810627..31810940 383..696 99 <- Minus
3R 31811000..31811365 17..382 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:56:40 Download gff for BO18074.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27636349..27636662 383..696 99 <- Minus
arm_3R 27636722..27637087 17..382 100   Minus

BO18074.pep Sequence

Translation from 16 to 712

> BO18074.pep
MHNCSYLFDPLYLFSNLPSDIKWSIIDRWGTHPLLIKTFAQRIRDELAKF
VETKRNDVVILFTAHSLPLKAVNRGDAYPSEIGASVHMVMQELGQTNPYS
LAWQSKVGPLPWLAPATDDAIKGYVKQGLKNFILVPIAFVNEHIETLHEL
DIEYCDELAKEVGVEEIRRAATPNDHPLFIDALTNVVADHLKSQQAVNPK
FLMRCPMCSNPKCRESKSWYRQLCSNASFLDH

BO18074.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:06:04
Subject Length Description Subject Range Query Range Score Percent Strand
FeCH-PB 226 CG2098-PB 1..226 1..226 1210 100 Plus
FeCH-PA 384 CG2098-PA 170..384 12..226 1127 98.6 Plus
FeCH-PC 281 CG2098-PC 170..280 12..122 568 97.3 Plus