Clone Sequence Records
BO18078.3prime Sequence
820 bp (675 high quality bases) assembled on 2006-10-13
> BO18078.3prime
ATGGTCTAGAAAGCTTGCTACAAAACACGAGTGGCCCGAACACTGTGTGA
GATTCTTGAGACGCAACGAATACAAAGCTCGTTCAATGGGCAGCAGATCG
TAGGCAATGTTGGTCATTTGAAAGGGATCCAGTTGCAGGTCATATGCCTC
CAAAAAGTTCTCGTTATCCCGAAATTCGCAGTAAATGCGATCCTCGCGAT
GGCGAATATTTCTTAAGCAGGCGTAGGTGTTGTTCCATGCATCCTGGCAA
TGGCAATCCGCTGCGGGGGTGCACTGCGCCAATCGATCCTTTTCTGGCCA
AGGGCATTCAGGATTAAAGGTGGCCAGAGTTCCCTCGCCCCAGTACTCGA
TCAACAGGGAACGCTCGAAAAATGGAACCCTTCGCCTTTTGTTGAGCAAA
AGCTCGTGAAATGATTGCCCATCCATGTAGGATGGTGTGTCGATGTCGGC
CCAGGCCAATATAGTCGGTGCCAAGTCCACTAGACTGACGGCAGTGTCAA
TGTGGCTCTCAGGTGCTATTCCAGGTCCCCGGATTAGCAGCGGTACGTTA
ATATCCGTTTCGTAGGGCTGTCTCTTATCGAAGGGCTGTGCAAACTGCCC
CACATGGTAGCCGTTATCCGAGGTGTAGATAATGTAGGTGTTCTCCAACG
ATTGCGTATCGTTTAGCACTCCCATCAAGGTGACGACCAGTTCGTCCACG
GCCAGCAGCGTTTCCCAGCGTTTCTGGAAATACGTGTCTATGGTGTTGAT
GGTTTCGTTGGGCAAACGACGTGCTGCTCGCACCAACCAGTGCTTATCCT
GCTTAACTTGATTGAAGCTG
BO18078.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30059-PA | 1479 | CG30059-RA | 675..1476 | 820..19 | 3985 | 99.8 | Minus |
CG18278-PA | 1479 | CG18278-RA | 675..1476 | 820..19 | 3985 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:57:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30059-RA | 1683 | CG30059-RA | 751..1552 | 820..19 | 3995 | 99.9 | Minus |
CG18278-RA | 1677 | CG18278-RA | 745..1546 | 820..19 | 3995 | 99.9 | Minus |
CG33470-RA | 1159 | CG33470-RA | 974..1116 | 19..161 | 715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:57:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13408373..13409011 | 160..798 | 3180 | 99.8 | Plus |
2R | 25286936 | 2R | 13413100..13413738 | 160..798 | 3180 | 99.8 | Plus |
2R | 25286936 | 2R | 13408173..13408315 | 19..161 | 715 | 100 | Plus |
2R | 25286936 | 2R | 13412900..13413042 | 19..161 | 715 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:57:11 has no hits.
BO18078.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:59 Download gff for
BO18078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18278-PA | 675..1479 | 18..820 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:08:36 Download gff for
BO18078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18278-RA | 745..1546 | 19..820 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:40:32 Download gff for
BO18078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18278-RA | 745..1546 | 19..820 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:40:32 Download gff for
BO18078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13408173..13408313 | 19..159 | 100 | <- | Plus |
2R | 13408373..13409010 | 160..797 | 99 | <- | Plus |
2R | 13409068..13409090 | 798..820 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:08:36 Download gff for
BO18078.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9295678..9295818 | 19..159 | 100 | <- | Plus |
arm_2R | 9295878..9296515 | 160..797 | 99 | <- | Plus |
arm_2R | 9296573..9296595 | 798..820 | 100 | | Plus |
BO18078.5prime Sequence
822 bp (746 high quality bases) assembled on 2006-10-13
> BO18078.5prime
GAAGTTATCAGTCGACATGATCAGCTTAGCCCCCCTGATCATCCTAGTCC
TCGCTTGCCTGGGAAACACGGCCAGCGAGAAGTTGCCCAACATTCTGCTG
ATCCTGTCCGACGATCAGGATGTGGAGCTGCGCGGTATGTTTCCCATGGA
GCATACGATCGAAATGCTGGGTTTCGGTGGCGCCCTGTTCCACAACGCCT
ACACGCCCTCGCCCATCTGCTGTCCGGCGAGGACGAGTCTGCTGACGGGC
ATGTATGCGCACAATCACGGCACCCGGAACAATTCCGTAAGTGGTGGATG
CTACGGACCACACTGGCGGCGAGCGCTGGAGCCCCGGGCCTTGCCATACA
TCTTGCAGCAGCACGGATACAACACCTTCTTTGGCGGGAAGTACTTGAAT
CAGTACTGGGGTGCTGGGGATGTGCCAAAGGGTTGGAACCACTTCTATGG
CCTTCACGGGAACTCTAGATACTATAACTACACACTGCGCGAAAATAGCG
GCAACGTGCACTACGAGTCCACCTACCTAACCGATCTGCTAAGAGATCGC
GCCGCTGACTTTCTAAGAAATGCTACACAATCCTCGGAACCGTTCTTCGC
GATGGTCGCCCCACCGGCAGCCCATGAACCCTTCACTCCGGCACCAAGAC
ATGAGGGTGTGTTCTCCCATATCGAAGCCCTGCGCACACCCAGCTTCAAT
CAAGTTAAGCAGGATAAGCACTGGTTGGTGCGAGCAGCACGTCGTCTGCC
CAACGAAACCATCAACACCATAGACACGTATTTCCAGAAACGCTGGGAAA
CGCTGCTGGCCGTGGACGAACT
BO18078.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18278-PA | 1479 | CG18278-RA | 1..806 | 17..822 | 4030 | 100 | Plus |
CG30059-PA | 1479 | CG30059-RA | 1..806 | 17..822 | 3680 | 98.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:47:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18278-RA | 1677 | CG18278-RA | 70..876 | 16..822 | 4035 | 100 | Plus |
CG30059-RA | 1683 | CG30059-RA | 76..882 | 16..822 | 3825 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:47:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13409063..13409762 | 718..19 | 3485 | 99.9 | Minus |
2R | 25286936 | 2R | 13413790..13414489 | 718..19 | 3275 | 97.9 | Minus |
2R | 25286936 | 2R | 13413629..13413738 | 822..713 | 550 | 100 | Minus |
2R | 25286936 | 2R | 13408902..13409011 | 822..713 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-08 11:47:48 has no hits.
BO18078.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:18:00 Download gff for
BO18078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18278-PA | 1..806 | 17..822 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:37:00 Download gff for
BO18078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18278-RA | 62..876 | 7..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:42:17 Download gff for
BO18078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18278-RA | 62..876 | 7..822 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:42:17 Download gff for
BO18078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13408902..13409010 | 714..822 | 100 | <- | Minus |
2R | 13409068..13409768 | 8..713 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:37:00 Download gff for
BO18078.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9296407..9296515 | 714..822 | 100 | <- | Minus |
arm_2R | 9296573..9297273 | 8..713 | 99 | | Minus |
BO18078.complete Sequence
1510 bp assembled on 2006-10-11
GenBank Submission: FJ634308
> BO18078.complete
GAAGTTATCAGTCGACATGATCAGCTTAGCCCCCCTGATCATCCTAGTCC
TCGCTTGCCTGGGAAACACGGCCAGCGAGAAGTTGCCCAACATTCTGCTG
ATCCTGTCCGACGATCAGGATGTGGAGCTGCGCGGTATGTTTCCCATGGA
GCATACGATCGAAATGCTGGGTTTCGGTGGCGCCCTGTTCCACAACGCCT
ACACGCCCTCGCCCATCTGCTGTCCGGCGAGGACGAGTCTGCTGACGGGC
ATGTATGCGCACAATCACGGCACCCGGAACAATTCCGTAAGTGGTGGATG
CTACGGACCACACTGGCGGCGAGCGCTGGAGCCCCGGGCCTTGCCATACA
TCTTGCAGCAGCACGGATACAACACCTTCTTTGGCGGGAAGTACTTGAAT
CAGTACTGGGGTGCTGGGGATGTGCCAAAGGGTTGGAACCACTTCTATGG
CCTTCACGGGAACTCTAGATACTATAACTACACACTGCGCGAAAATAGCG
GCAACGTGCACTACGAGTCCACCTACCTAACCGATCTGCTAAGAGATCGC
GCCGCTGACTTTCTAAGAAATGCTACACAATCCTCGGAACCGTTCTTCGC
GATGGTCGCCCCACCGGCAGCCCATGAACCCTTCACTCCGGCACCAAGAC
ATGAGGGTGTGTTCTCCCATATCGAAGCCCTGCGCACACCCAGCTTCAAT
CAAGTTAAGCAGGATAAGCACTGGTTGGTGCGAGCAGCACGTCGTCTGCC
CAACGAAACCATCAACACCATAGACACGTATTTCCAGAAACGCTGGGAAA
CGCTGCTGGCCGTGGACGAACTGGTCGTCACCTTGATGGGAGTGCTAAAC
GATACGCAATCGTTGGAGAACACCTACATTATCTACACCTCGGATAACGG
CTACCATGTGGGGCAGTTTGCACAGCCCTTCGATAAGAGACAGCCCTACG
AAACGGATATTAACGTACCGCTGCTAATCCGGGGACCTGGAATAGCACCT
GAGAGCCACATTGACACTGCCGTCAGTCTAGTGGACTTGGCACCGACTAT
ATTGGCCTGGGCCGACATCGACACACCATCCTACATGGATGGGCAATCAT
TTCACGAGCTTTTGCTCAACAAAAGGCGAAGGGTTCCATTTTTCGAGCGT
TCCCTGTTGATCGAGTACTGGGGCGAGGGAACTCTGGCCACCTTTAATCC
TGAATGCCCTTGGCCAGAAAAGGATCGATTGGCGCAGTGCACCCCCGCAG
CGGATTGCCATTGCCAGGATGCATGGAACAACACCTACGCCTGCTTAAGA
AATATTCGCCATCGCGAGGATCGCATTTACTGCGAATTTCGGGATAACGA
GAACTTTTTGGAGGCATATGACCTGCAACTGGATCCCTTTCAAATGACCA
ACATTGCCTACGATCTGCTGCCCATTGAACGAGCTTTGTATTCGTTGCGT
CTCAAGAATCTCACACAGTGTTCGGGCCACTCGTGTTTTGTAGCAAGCTT
TCTAGACCAT
BO18078.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:46:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18278-RA | 1479 | CG18278-PA | 1..1476 | 17..1492 | 7380 | 100 | Plus |
CG30059-RA | 1479 | CG30059-PA | 1..1476 | 17..1492 | 7170 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:46:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18278-RA | 1677 | CG18278-RA | 70..1546 | 16..1492 | 7385 | 100 | Plus |
CG30059-RA | 1683 | CG30059-RA | 76..1552 | 16..1492 | 7175 | 99.1 | Plus |
CG33470-RA | 1159 | CG33470-RA | 974..1116 | 1492..1350 | 715 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:46:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13409063..13409762 | 718..19 | 3485 | 99.9 | Minus |
2R | 25286936 | 2R | 13413790..13414489 | 718..19 | 3275 | 97.9 | Minus |
2R | 25286936 | 2R | 13408373..13409011 | 1351..713 | 3195 | 100 | Minus |
2R | 25286936 | 2R | 13413100..13413738 | 1351..713 | 3195 | 100 | Minus |
2R | 25286936 | 2R | 13408173..13408315 | 1492..1350 | 715 | 100 | Minus |
2R | 25286936 | 2R | 13412900..13413042 | 1492..1350 | 715 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:46:55 has no hits.
BO18078.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:44 Download gff for
BO18078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18278-RA | 1..1479 | 17..1493 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:41:03 Download gff for
BO18078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18278-RA | 128..1612 | 7..1492 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:01:50 Download gff for
BO18078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18278-RA | 71..1546 | 17..1494 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:44 Download gff for
BO18078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18278-RA | 128..1612 | 7..1492 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:31:41 Download gff for
BO18078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18278-RA | 71..1546 | 17..1494 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:31:41 Download gff for
BO18078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13408171..13408313 | 1352..1494 | 98 | <- | Minus |
2R | 13408373..13409010 | 714..1351 | 100 | <- | Minus |
2R | 13409068..13409763 | 17..713 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:01:50 Download gff for
BO18078.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9295676..9295818 | 1352..1494 | 98 | <- | Minus |
arm_2R | 9295878..9296515 | 714..1351 | 100 | <- | Minus |
arm_2R | 9296573..9297268 | 17..713 | 99 | | Minus |
BO18078.pep Sequence
Translation from 16 to 1510
> BO18078.pep
MISLAPLIILVLACLGNTASEKLPNILLILSDDQDVELRGMFPMEHTIEM
LGFGGALFHNAYTPSPICCPARTSLLTGMYAHNHGTRNNSVSGGCYGPHW
RRALEPRALPYILQQHGYNTFFGGKYLNQYWGAGDVPKGWNHFYGLHGNS
RYYNYTLRENSGNVHYESTYLTDLLRDRAADFLRNATQSSEPFFAMVAPP
AAHEPFTPAPRHEGVFSHIEALRTPSFNQVKQDKHWLVRAARRLPNETIN
TIDTYFQKRWETLLAVDELVVTLMGVLNDTQSLENTYIIYTSDNGYHVGQ
FAQPFDKRQPYETDINVPLLIRGPGIAPESHIDTAVSLVDLAPTILAWAD
IDTPSYMDGQSFHELLLNKRRRVPFFERSLLIEYWGEGTLATFNPECPWP
EKDRLAQCTPAADCHCQDAWNNTYACLRNIRHREDRIYCEFRDNENFLEA
YDLQLDPFQMTNIAYDLLPIERALYSLRLKNLTQCSGHSCFVASFLDH
BO18078.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:06:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18278-PA | 492 | CG18278-PA | 1..492 | 1..492 | 2683 | 100 | Plus |
CG30059-PA | 492 | CG30059-PA | 1..492 | 1..492 | 2665 | 99 | Plus |
Sulf1-PC | 1114 | CG6725-PC | 47..407 | 17..373 | 689 | 40.9 | Plus |
Sulf1-PB | 1114 | CG6725-PB | 47..407 | 17..373 | 689 | 40.9 | Plus |
Sulf1-PA | 1114 | CG6725-PA | 47..407 | 17..373 | 689 | 40.9 | Plus |