Clone BO18078 Report

Search the DGRC for BO18078

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:180
Well:78
Vector:pDNR-Dual
Associated Gene/TranscriptCG18278-RA
Protein status:BO18078.pep: validated full length
Sequenced Size:1510

Clone Sequence Records

BO18078.3prime Sequence

820 bp (675 high quality bases) assembled on 2006-10-13

> BO18078.3prime
ATGGTCTAGAAAGCTTGCTACAAAACACGAGTGGCCCGAACACTGTGTGA
GATTCTTGAGACGCAACGAATACAAAGCTCGTTCAATGGGCAGCAGATCG
TAGGCAATGTTGGTCATTTGAAAGGGATCCAGTTGCAGGTCATATGCCTC
CAAAAAGTTCTCGTTATCCCGAAATTCGCAGTAAATGCGATCCTCGCGAT
GGCGAATATTTCTTAAGCAGGCGTAGGTGTTGTTCCATGCATCCTGGCAA
TGGCAATCCGCTGCGGGGGTGCACTGCGCCAATCGATCCTTTTCTGGCCA
AGGGCATTCAGGATTAAAGGTGGCCAGAGTTCCCTCGCCCCAGTACTCGA
TCAACAGGGAACGCTCGAAAAATGGAACCCTTCGCCTTTTGTTGAGCAAA
AGCTCGTGAAATGATTGCCCATCCATGTAGGATGGTGTGTCGATGTCGGC
CCAGGCCAATATAGTCGGTGCCAAGTCCACTAGACTGACGGCAGTGTCAA
TGTGGCTCTCAGGTGCTATTCCAGGTCCCCGGATTAGCAGCGGTACGTTA
ATATCCGTTTCGTAGGGCTGTCTCTTATCGAAGGGCTGTGCAAACTGCCC
CACATGGTAGCCGTTATCCGAGGTGTAGATAATGTAGGTGTTCTCCAACG
ATTGCGTATCGTTTAGCACTCCCATCAAGGTGACGACCAGTTCGTCCACG
GCCAGCAGCGTTTCCCAGCGTTTCTGGAAATACGTGTCTATGGTGTTGAT
GGTTTCGTTGGGCAAACGACGTGCTGCTCGCACCAACCAGTGCTTATCCT
GCTTAACTTGATTGAAGCTG

BO18078.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG30059-PA 1479 CG30059-RA 675..1476 820..19 3985 99.8 Minus
CG18278-PA 1479 CG18278-RA 675..1476 820..19 3985 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:57:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG30059-RA 1683 CG30059-RA 751..1552 820..19 3995 99.9 Minus
CG18278-RA 1677 CG18278-RA 745..1546 820..19 3995 99.9 Minus
CG33470-RA 1159 CG33470-RA 974..1116 19..161 715 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:57:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13408373..13409011 160..798 3180 99.8 Plus
2R 25286936 2R 13413100..13413738 160..798 3180 99.8 Plus
2R 25286936 2R 13408173..13408315 19..161 715 100 Plus
2R 25286936 2R 13412900..13413042 19..161 715 100 Plus
Blast to na_te.dros performed on 2015-02-10 15:57:11 has no hits.

BO18078.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:17:59 Download gff for BO18078.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18278-PA 675..1479 18..820 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 20:08:36 Download gff for BO18078.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18278-RA 745..1546 19..820 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:40:32 Download gff for BO18078.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18278-RA 745..1546 19..820 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:40:32 Download gff for BO18078.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 13408173..13408313 19..159 100 <- Plus
2R 13408373..13409010 160..797 99 <- Plus
2R 13409068..13409090 798..820 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 20:08:36 Download gff for BO18078.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9295678..9295818 19..159 100 <- Plus
arm_2R 9295878..9296515 160..797 99 <- Plus
arm_2R 9296573..9296595 798..820 100   Plus

BO18078.5prime Sequence

822 bp (746 high quality bases) assembled on 2006-10-13

> BO18078.5prime
GAAGTTATCAGTCGACATGATCAGCTTAGCCCCCCTGATCATCCTAGTCC
TCGCTTGCCTGGGAAACACGGCCAGCGAGAAGTTGCCCAACATTCTGCTG
ATCCTGTCCGACGATCAGGATGTGGAGCTGCGCGGTATGTTTCCCATGGA
GCATACGATCGAAATGCTGGGTTTCGGTGGCGCCCTGTTCCACAACGCCT
ACACGCCCTCGCCCATCTGCTGTCCGGCGAGGACGAGTCTGCTGACGGGC
ATGTATGCGCACAATCACGGCACCCGGAACAATTCCGTAAGTGGTGGATG
CTACGGACCACACTGGCGGCGAGCGCTGGAGCCCCGGGCCTTGCCATACA
TCTTGCAGCAGCACGGATACAACACCTTCTTTGGCGGGAAGTACTTGAAT
CAGTACTGGGGTGCTGGGGATGTGCCAAAGGGTTGGAACCACTTCTATGG
CCTTCACGGGAACTCTAGATACTATAACTACACACTGCGCGAAAATAGCG
GCAACGTGCACTACGAGTCCACCTACCTAACCGATCTGCTAAGAGATCGC
GCCGCTGACTTTCTAAGAAATGCTACACAATCCTCGGAACCGTTCTTCGC
GATGGTCGCCCCACCGGCAGCCCATGAACCCTTCACTCCGGCACCAAGAC
ATGAGGGTGTGTTCTCCCATATCGAAGCCCTGCGCACACCCAGCTTCAAT
CAAGTTAAGCAGGATAAGCACTGGTTGGTGCGAGCAGCACGTCGTCTGCC
CAACGAAACCATCAACACCATAGACACGTATTTCCAGAAACGCTGGGAAA
CGCTGCTGGCCGTGGACGAACT

BO18078.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG18278-PA 1479 CG18278-RA 1..806 17..822 4030 100 Plus
CG30059-PA 1479 CG30059-RA 1..806 17..822 3680 98.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:47:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG18278-RA 1677 CG18278-RA 70..876 16..822 4035 100 Plus
CG30059-RA 1683 CG30059-RA 76..882 16..822 3825 98.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:47:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13409063..13409762 718..19 3485 99.9 Minus
2R 25286936 2R 13413790..13414489 718..19 3275 97.9 Minus
2R 25286936 2R 13413629..13413738 822..713 550 100 Minus
2R 25286936 2R 13408902..13409011 822..713 550 100 Minus
Blast to na_te.dros performed on 2015-02-08 11:47:48 has no hits.

BO18078.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:18:00 Download gff for BO18078.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18278-PA 1..806 17..822 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:37:00 Download gff for BO18078.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18278-RA 62..876 7..822 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:42:17 Download gff for BO18078.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18278-RA 62..876 7..822 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:42:17 Download gff for BO18078.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 13408902..13409010 714..822 100 <- Minus
2R 13409068..13409768 8..713 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:37:00 Download gff for BO18078.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9296407..9296515 714..822 100 <- Minus
arm_2R 9296573..9297273 8..713 99   Minus

BO18078.complete Sequence

1510 bp assembled on 2006-10-11

GenBank Submission: FJ634308

> BO18078.complete
GAAGTTATCAGTCGACATGATCAGCTTAGCCCCCCTGATCATCCTAGTCC
TCGCTTGCCTGGGAAACACGGCCAGCGAGAAGTTGCCCAACATTCTGCTG
ATCCTGTCCGACGATCAGGATGTGGAGCTGCGCGGTATGTTTCCCATGGA
GCATACGATCGAAATGCTGGGTTTCGGTGGCGCCCTGTTCCACAACGCCT
ACACGCCCTCGCCCATCTGCTGTCCGGCGAGGACGAGTCTGCTGACGGGC
ATGTATGCGCACAATCACGGCACCCGGAACAATTCCGTAAGTGGTGGATG
CTACGGACCACACTGGCGGCGAGCGCTGGAGCCCCGGGCCTTGCCATACA
TCTTGCAGCAGCACGGATACAACACCTTCTTTGGCGGGAAGTACTTGAAT
CAGTACTGGGGTGCTGGGGATGTGCCAAAGGGTTGGAACCACTTCTATGG
CCTTCACGGGAACTCTAGATACTATAACTACACACTGCGCGAAAATAGCG
GCAACGTGCACTACGAGTCCACCTACCTAACCGATCTGCTAAGAGATCGC
GCCGCTGACTTTCTAAGAAATGCTACACAATCCTCGGAACCGTTCTTCGC
GATGGTCGCCCCACCGGCAGCCCATGAACCCTTCACTCCGGCACCAAGAC
ATGAGGGTGTGTTCTCCCATATCGAAGCCCTGCGCACACCCAGCTTCAAT
CAAGTTAAGCAGGATAAGCACTGGTTGGTGCGAGCAGCACGTCGTCTGCC
CAACGAAACCATCAACACCATAGACACGTATTTCCAGAAACGCTGGGAAA
CGCTGCTGGCCGTGGACGAACTGGTCGTCACCTTGATGGGAGTGCTAAAC
GATACGCAATCGTTGGAGAACACCTACATTATCTACACCTCGGATAACGG
CTACCATGTGGGGCAGTTTGCACAGCCCTTCGATAAGAGACAGCCCTACG
AAACGGATATTAACGTACCGCTGCTAATCCGGGGACCTGGAATAGCACCT
GAGAGCCACATTGACACTGCCGTCAGTCTAGTGGACTTGGCACCGACTAT
ATTGGCCTGGGCCGACATCGACACACCATCCTACATGGATGGGCAATCAT
TTCACGAGCTTTTGCTCAACAAAAGGCGAAGGGTTCCATTTTTCGAGCGT
TCCCTGTTGATCGAGTACTGGGGCGAGGGAACTCTGGCCACCTTTAATCC
TGAATGCCCTTGGCCAGAAAAGGATCGATTGGCGCAGTGCACCCCCGCAG
CGGATTGCCATTGCCAGGATGCATGGAACAACACCTACGCCTGCTTAAGA
AATATTCGCCATCGCGAGGATCGCATTTACTGCGAATTTCGGGATAACGA
GAACTTTTTGGAGGCATATGACCTGCAACTGGATCCCTTTCAAATGACCA
ACATTGCCTACGATCTGCTGCCCATTGAACGAGCTTTGTATTCGTTGCGT
CTCAAGAATCTCACACAGTGTTCGGGCCACTCGTGTTTTGTAGCAAGCTT
TCTAGACCAT

BO18078.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:46:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG18278-RA 1479 CG18278-PA 1..1476 17..1492 7380 100 Plus
CG30059-RA 1479 CG30059-PA 1..1476 17..1492 7170 99.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:46:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG18278-RA 1677 CG18278-RA 70..1546 16..1492 7385 100 Plus
CG30059-RA 1683 CG30059-RA 76..1552 16..1492 7175 99.1 Plus
CG33470-RA 1159 CG33470-RA 974..1116 1492..1350 715 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:46:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13409063..13409762 718..19 3485 99.9 Minus
2R 25286936 2R 13413790..13414489 718..19 3275 97.9 Minus
2R 25286936 2R 13408373..13409011 1351..713 3195 100 Minus
2R 25286936 2R 13413100..13413738 1351..713 3195 100 Minus
2R 25286936 2R 13408173..13408315 1492..1350 715 100 Minus
2R 25286936 2R 13412900..13413042 1492..1350 715 100 Minus
Blast to na_te.dros performed on 2014-11-27 01:46:55 has no hits.

BO18078.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:44 Download gff for BO18078.complete
Subject Subject Range Query Range Percent Splice Strand
CG18278-RA 1..1479 17..1493 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:41:03 Download gff for BO18078.complete
Subject Subject Range Query Range Percent Splice Strand
CG18278-RA 128..1612 7..1492 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:01:50 Download gff for BO18078.complete
Subject Subject Range Query Range Percent Splice Strand
CG18278-RA 71..1546 17..1494 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:44 Download gff for BO18078.complete
Subject Subject Range Query Range Percent Splice Strand
CG18278-RA 128..1612 7..1492 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:31:41 Download gff for BO18078.complete
Subject Subject Range Query Range Percent Splice Strand
CG18278-RA 71..1546 17..1494 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:31:41 Download gff for BO18078.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13408171..13408313 1352..1494 98 <- Minus
2R 13408373..13409010 714..1351 100 <- Minus
2R 13409068..13409763 17..713 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:01:50 Download gff for BO18078.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9295676..9295818 1352..1494 98 <- Minus
arm_2R 9295878..9296515 714..1351 100 <- Minus
arm_2R 9296573..9297268 17..713 99   Minus

BO18078.pep Sequence

Translation from 16 to 1510

> BO18078.pep
MISLAPLIILVLACLGNTASEKLPNILLILSDDQDVELRGMFPMEHTIEM
LGFGGALFHNAYTPSPICCPARTSLLTGMYAHNHGTRNNSVSGGCYGPHW
RRALEPRALPYILQQHGYNTFFGGKYLNQYWGAGDVPKGWNHFYGLHGNS
RYYNYTLRENSGNVHYESTYLTDLLRDRAADFLRNATQSSEPFFAMVAPP
AAHEPFTPAPRHEGVFSHIEALRTPSFNQVKQDKHWLVRAARRLPNETIN
TIDTYFQKRWETLLAVDELVVTLMGVLNDTQSLENTYIIYTSDNGYHVGQ
FAQPFDKRQPYETDINVPLLIRGPGIAPESHIDTAVSLVDLAPTILAWAD
IDTPSYMDGQSFHELLLNKRRRVPFFERSLLIEYWGEGTLATFNPECPWP
EKDRLAQCTPAADCHCQDAWNNTYACLRNIRHREDRIYCEFRDNENFLEA
YDLQLDPFQMTNIAYDLLPIERALYSLRLKNLTQCSGHSCFVASFLDH

BO18078.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:06:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG18278-PA 492 CG18278-PA 1..492 1..492 2683 100 Plus
CG30059-PA 492 CG30059-PA 1..492 1..492 2665 99 Plus
Sulf1-PC 1114 CG6725-PC 47..407 17..373 689 40.9 Plus
Sulf1-PB 1114 CG6725-PB 47..407 17..373 689 40.9 Plus
Sulf1-PA 1114 CG6725-PA 47..407 17..373 689 40.9 Plus