Clone BO18080 Report

Search the DGRC for BO18080

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:180
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptCG2924-RA
Protein status:BO18080.pep: validated full length
Sequenced Size:1225

Clone Sequence Records

BO18080.3prime Sequence

791 bp (762 high quality bases) assembled on 2006-10-13

> BO18080.3prime
ATGGTCTAGAAAGCTTGCGCCATCTTCCTTGGGCGGGGTGAACCATCCAT
TCTTTTCGTGAATCTGCACCAGAGATTTGAAGCTCTGCTGGGCTCGAGCC
AAACTGTATTGGCCCTGGGTCAGTGCTTTGGTAGCCCCGAATTGGATGCG
CGCCTTTCCCTTGACGAGAGTGGCTGCAATTTGCATGATAACCGCTTCCA
CGGTATATGCCGAGCTCCAGCCCTGTTTGGTCAGCAATTCCATGCAGATG
GCACCACCGATGAGCACATAGCCGCCTGAGATAATCGGATGGACAACGCG
CACAAATGGCGGCTCGAAGGGATACGTCTCCTTGAACAGGATGTTGAGCA
GTATGCTGTCCTTGCCCTCCTTCTCCTTGAGCATTTGCAGATCACTGTGC
AGCGGACTGTCCGGGTCGACAGACTTGAGGCGAATGTTCCATTCGTAAAT
CGACTCATTGACGAGCTCAATAGAATACATGTTCTTTTTGAAGGCGTCTG
AGCGATAAATGTCGCGTAATTCCTTCATTAAGCGATCGGTTGCCTGCACG
GAACCCGAAACGGAACCTTTTAGATAGTCTTGTCTCTGACTTTGACGCAG
TTTTTCTAGAGTCGCTAGGTGTTCCACTTCCATGTCGTCCTTCTTGCTTG
TACTGCGTACATCATCCATTTCCAGCGGCAAGTCCTCATCGCCCTCGCTC
TCCTGTTCGCTCTCGCCGATGGGATCCTCGATCTCCTCCTGATCCGAATC
GGTCTCCTCGTTGCCGTGGGGTCCGCCACCGCCCCCCGCTC

BO18080.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG2924-PA 1194 CG2924-RA 419..1191 791..19 3865 100 Minus
CG2924-PC 1194 CG2924-RC 419..1191 791..19 3865 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:27:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG2924-RD 2606 CG2924-RD 1037..1809 791..19 3865 100 Minus
CG2924-RB 2717 CG2924-RB 1148..1920 791..19 3865 100 Minus
CG2924-RE 2928 CG2924-RE 1087..1859 791..19 3865 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:27:24
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2266247..2266539 275..567 1465 100 Plus
X 23542271 X 2266035..2266186 126..277 760 100 Plus
X 23542271 X 2266820..2266968 643..791 745 100 Plus
X 23542271 X 2265876..2265955 47..126 400 100 Plus
X 23542271 X 2266596..2266673 567..644 390 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:27:28 has no hits.

BO18080.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:18:00 Download gff for BO18080.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2924-PC 419..1194 15..791 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:21:47 Download gff for BO18080.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2924-RA 1087..1862 15..791 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:21:40 Download gff for BO18080.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2924-RE 1087..1862 15..791 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:21:40 Download gff for BO18080.3prime
Subject Subject Range Query Range Percent Splice Strand
X 2266036..2266184 127..275 100 <- Plus
X 2266248..2266539 276..567 100 <- Plus
X 2266597..2266671 568..642 100 <- Plus
X 2266820..2266968 643..791 100   Plus
X 2265784..2265816 15..47 93 <- Plus
X 2265877..2265955 48..126 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:21:47 Download gff for BO18080.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2159817..2159849 15..47 93 <- Plus
arm_X 2159910..2159988 48..126 100 <- Plus
arm_X 2160069..2160217 127..275 100 <- Plus
arm_X 2160281..2160572 276..567 100 <- Plus
arm_X 2160630..2160704 568..642 100 <- Plus
arm_X 2160853..2161001 643..791 100   Plus

BO18080.5prime Sequence

914 bp (774 high quality bases) assembled on 2006-10-13

> BO18080.5prime
GAAGTTATCAGTCGACATGGCGTGCCTTAACACCCTGAAGCAGGAAATCA
AAACGCTAGAGAAGATCTTCCCGAAGAACCACGAGCGCTTTCAGATCCTC
AATTCCAGCGTCGACGAACTGCTCTGCCGTTTTATCGATAAGAATGGAAA
GCGGTACGATATTCACGCCAACATAACGGAAACGTATCCCTCATCGCCGC
CAGTTTGGTTCGCCGAAAGCGAGGAGACGAGCGTCACAAATGCTGTTCAA
ATACTTAGCAATACGAATGGACGTGATAATCACGTGATCAATCAGGTGGG
CATACTGCTGCGTGAGCTGTGCCGCCTTCACAACGTTCCACTGCCACCCG
ACATCGATAATTTGGCTCTGCCGCTGCAAACGCCGCCGCCATCCGCTTCC
CCCCTTCGCTGCGAGCAGAGACCAGGTGGTGGTGGAGCGGGGGGCGGTGG
CGGACCCCACGGCAACGAGGAGACCGATTCGGATCAGGAGGAGATCGAGG
ATCCCATCGGCGAGAGCGAACAGGAGAGCGAGGGCGATGAGGACTTGCCG
CTGGAAATGGATGATGTACGCAGTACAAGCAAGAAGGACGACATGGAAGT
GGAACACCTAGCGACTCTAGAAAAACTGCGTCAAAGTCAGAGACAAGACT
ATCTAAAAGGTTCCGTTTCGGGTTCCGTGCAGGCAACCGATCGCTTAATG
AAGGAATTACGCGACATTTATCGCTCAGACGCCTTCAAAAAGAACATGTA
TTCTATTGAGCTCGTCAATGAGTCGATTTACGAATGGAACATTCGCCTCA
AGTCTGTCGACCCGGACAGTCCGCTGCACAGTGATCTGCAAATGCTCAAG
GAGAAAGAGGGCAAGGACAGCATACTGCTCAACATCCTGTTCAAAGAGAC
GTATCCCTTCGAGC

BO18080.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG2924-PA 1194 CG2924-RA 1..898 17..914 4440 99.7 Plus
CG2924-PC 1194 CG2924-RC 1..898 17..914 4440 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:43:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG2924-RD 2606 CG2924-RD 619..1516 17..914 4460 99.8 Plus
CG2924-RB 2717 CG2924-RB 730..1627 17..914 4460 99.8 Plus
CG2924-RE 2928 CG2924-RE 669..1566 17..914 4460 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:43:27
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2266820..2267110 583..293 1455 100 Minus
X 23542271 X 2266284..2266539 914..659 1250 99.2 Minus
X 23542271 X 2268937..2269099 179..17 815 100 Minus
X 23542271 X 2267174..2267294 298..178 605 100 Minus
X 23542271 X 2266596..2266673 659..582 390 100 Minus
Blast to na_te.dros performed on 2015-01-30 17:43:31 has no hits.

BO18080.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:18:01 Download gff for BO18080.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2924-PC 1..898 17..914 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:49:35 Download gff for BO18080.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2924-RA 663..1566 9..914 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:04:30 Download gff for BO18080.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2924-RE 663..1566 9..914 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:04:30 Download gff for BO18080.5prime
Subject Subject Range Query Range Percent Splice Strand
X 2266284..2266539 659..914 99 <- Minus
X 2266597..2266671 584..658 100 <- Minus
X 2266820..2267107 296..583 100 <- Minus
X 2267177..2267293 179..295 100 <- Minus
X 2268938..2269105 9..178 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:49:35 Download gff for BO18080.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2160317..2160572 659..914 99 <- Minus
arm_X 2160630..2160704 584..658 100 <- Minus
arm_X 2160853..2161140 296..583 100 <- Minus
arm_X 2161210..2161326 179..295 100 <- Minus
arm_X 2162971..2163138 9..178 97   Minus

BO18080.complete Sequence

1225 bp assembled on 2006-10-11

GenBank Submission: FJ634309

> BO18080.complete
GAAGTTATCAGTCGACATGGCGTGCCTTAACACCCTGAAGCAGGAAATCA
AAACGCTAGAGAAGATCTTCCCGAAGAACCACGAGCGCTTTCAGATCCTC
AATTCCAGCGTCGACGAACTGCTCTGCCGTTTTATCGATAAGAATGGAAA
GCGGTACGATATTCACGCCAACATAACGGAAACGTATCCCTCATCGCCGC
CAGTTTGGTTCGCCGAAAGCGAGGAGACGAGCGTCACAAATGCTGTTCAA
ATACTTAGCAATACGAATGGACGTGATAATCACGTGATCAATCAGGTGGG
CATACTGCTGCGTGAGCTGTGCCGCCTTCACAACGTTCCACTGCCACCCG
ACATCGATAATTTGGCTCTGCCGCTGCAAACGCCGCCGCCATCCGCTTCC
CCCCTTCGCTGCGAGCAGAGACCAGGTGGTGGTGGAGCGGGGGGCGGTGG
CGGACCCCACGGCAACGAGGAGACCGATTCGGATCAGGAGGAGATCGAGG
ATCCCATCGGCGAGAGCGAACAGGAGAGCGAGGGCGATGAGGACTTGCCG
CTGGAAATGGATGATGTACGCAGTACAAGCAAGAAGGACGACATGGAAGT
GGAACACCTAGCGACTCTAGAAAAACTGCGTCAAAGTCAGAGACAAGACT
ATCTAAAAGGTTCCGTTTCGGGTTCCGTGCAGGCAACCGATCGCTTAATG
AAGGAATTACGCGACATTTATCGCTCAGACGCCTTCAAAAAGAACATGTA
TTCTATTGAGCTCGTCAATGAGTCGATTTACGAATGGAACATTCGCCTCA
AGTCTGTCGACCCGGACAGTCCGCTGCACAGTGATCTGCAAATGCTCAAG
GAGAAGGAGGGCAAGGACAGCATACTGCTCAACATCCTGTTCAAGGAGAC
GTATCCCTTCGAGCCGCCATTTGTGCGCGTTGTCCATCCGATTATCTCAG
GCGGCTATGTGCTCATCGGTGGTGCCATCTGCATGGAATTGCTGACCAAA
CAGGGCTGGAGCTCGGCATATACCGTGGAAGCGGTTATCATGCAAATTGC
AGCCACTCTCGTCAAGGGAAAGGCGCGCATCCAATTCGGGGCTACCAAAG
CACTGACCCAGGGCCAATACAGTTTGGCTCGAGCCCAGCAGAGCTTCAAA
TCTCTGGTGCAGATTCACGAAAAGAATGGATGGTTCACCCCGCCCAAGGA
AGATGGCGCAAGCTTTCTAGACCAT

BO18080.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:42:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG2924-RD 1194 CG2924-PD 1..1191 17..1207 5955 100 Plus
CG2924-RB 1194 CG2924-PB 1..1191 17..1207 5955 100 Plus
CG2924-RE 1194 CG2924-PE 1..1191 17..1207 5955 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:42:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG2924-RD 2606 CG2924-RD 619..1809 17..1207 5955 100 Plus
CG2924-RB 2717 CG2924-RB 730..1920 17..1207 5955 100 Plus
CG2924-RE 2928 CG2924-RE 669..1859 17..1207 5955 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:42:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2266247..2266539 951..659 1465 100 Minus
X 23542271 X 2266820..2267110 583..293 1455 100 Minus
X 23542271 X 2268937..2269099 179..17 815 100 Minus
X 23542271 X 2266035..2266186 1100..949 760 100 Minus
X 23542271 X 2267174..2267294 298..178 605 100 Minus
X 23542271 X 2265876..2265955 1179..1100 400 100 Minus
X 23542271 X 2266596..2266673 659..582 390 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:42:22 has no hits.

BO18080.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:45 Download gff for BO18080.complete
Subject Subject Range Query Range Percent Splice Strand
CG2924-RC 1..1194 17..1211 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:41:04 Download gff for BO18080.complete
Subject Subject Range Query Range Percent Splice Strand
CG2924-RC 608..1807 9..1211 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:29:57 Download gff for BO18080.complete
Subject Subject Range Query Range Percent Splice Strand
CG2924-RA 669..1859 17..1209 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:45 Download gff for BO18080.complete
Subject Subject Range Query Range Percent Splice Strand
CG2924-RC 608..1807 9..1211 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:36:34 Download gff for BO18080.complete
Subject Subject Range Query Range Percent Splice Strand
CG2924-RE 669..1859 17..1209 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:36:34 Download gff for BO18080.complete
Subject Subject Range Query Range Percent Splice Strand
X 2266248..2266539 659..950 100 <- Minus
X 2266597..2266671 584..658 100 <- Minus
X 2265786..2265816 1179..1209 93 <- Minus
X 2265877..2265955 1100..1178 100 <- Minus
X 2266036..2266184 951..1099 100 <- Minus
X 2266820..2267107 296..583 100 <- Minus
X 2267177..2267293 179..295 100 <- Minus
X 2268938..2269099 17..178 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:29:57 Download gff for BO18080.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2159819..2159849 1179..1209 93 <- Minus
arm_X 2159910..2159988 1100..1178 100 <- Minus
arm_X 2160069..2160217 951..1099 100 <- Minus
arm_X 2160281..2160572 659..950 100 <- Minus
arm_X 2160630..2160704 584..658 100 <- Minus
arm_X 2160853..2161140 296..583 100 <- Minus
arm_X 2161210..2161326 179..295 100 <- Minus
arm_X 2162971..2163132 17..178 100   Minus

BO18080.pep Sequence

Translation from 16 to 1225

> BO18080.pep
MACLNTLKQEIKTLEKIFPKNHERFQILNSSVDELLCRFIDKNGKRYDIH
ANITETYPSSPPVWFAESEETSVTNAVQILSNTNGRDNHVINQVGILLRE
LCRLHNVPLPPDIDNLALPLQTPPPSASPLRCEQRPGGGGAGGGGGPHGN
EETDSDQEEIEDPIGESEQESEGDEDLPLEMDDVRSTSKKDDMEVEHLAT
LEKLRQSQRQDYLKGSVSGSVQATDRLMKELRDIYRSDAFKKNMYSIELV
NESIYEWNIRLKSVDPDSPLHSDLQMLKEKEGKDSILLNILFKETYPFEP
PFVRVVHPIISGGYVLIGGAICMELLTKQGWSSAYTVEAVIMQIAATLVK
GKARIQFGATKALTQGQYSLARAQQSFKSLVQIHEKNGWFTPPKEDGASF
LDH

BO18080.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:06:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG2924-PD 397 CG2924-PD 1..397 1..397 2068 100 Plus
CG2924-PB 397 CG2924-PB 1..397 1..397 2068 100 Plus
CG2924-PE 397 CG2924-PE 1..397 1..397 2068 100 Plus
CG2924-PA 397 CG2924-PA 1..397 1..397 2068 100 Plus
CG4502-PA 306 CG4502-PA 140..306 224..397 452 51.7 Plus