Clone Sequence Records
BO18080.3prime Sequence
791 bp (762 high quality bases) assembled on 2006-10-13
> BO18080.3prime
ATGGTCTAGAAAGCTTGCGCCATCTTCCTTGGGCGGGGTGAACCATCCAT
TCTTTTCGTGAATCTGCACCAGAGATTTGAAGCTCTGCTGGGCTCGAGCC
AAACTGTATTGGCCCTGGGTCAGTGCTTTGGTAGCCCCGAATTGGATGCG
CGCCTTTCCCTTGACGAGAGTGGCTGCAATTTGCATGATAACCGCTTCCA
CGGTATATGCCGAGCTCCAGCCCTGTTTGGTCAGCAATTCCATGCAGATG
GCACCACCGATGAGCACATAGCCGCCTGAGATAATCGGATGGACAACGCG
CACAAATGGCGGCTCGAAGGGATACGTCTCCTTGAACAGGATGTTGAGCA
GTATGCTGTCCTTGCCCTCCTTCTCCTTGAGCATTTGCAGATCACTGTGC
AGCGGACTGTCCGGGTCGACAGACTTGAGGCGAATGTTCCATTCGTAAAT
CGACTCATTGACGAGCTCAATAGAATACATGTTCTTTTTGAAGGCGTCTG
AGCGATAAATGTCGCGTAATTCCTTCATTAAGCGATCGGTTGCCTGCACG
GAACCCGAAACGGAACCTTTTAGATAGTCTTGTCTCTGACTTTGACGCAG
TTTTTCTAGAGTCGCTAGGTGTTCCACTTCCATGTCGTCCTTCTTGCTTG
TACTGCGTACATCATCCATTTCCAGCGGCAAGTCCTCATCGCCCTCGCTC
TCCTGTTCGCTCTCGCCGATGGGATCCTCGATCTCCTCCTGATCCGAATC
GGTCTCCTCGTTGCCGTGGGGTCCGCCACCGCCCCCCGCTC
BO18080.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2924-PA | 1194 | CG2924-RA | 419..1191 | 791..19 | 3865 | 100 | Minus |
CG2924-PC | 1194 | CG2924-RC | 419..1191 | 791..19 | 3865 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:27:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2924-RD | 2606 | CG2924-RD | 1037..1809 | 791..19 | 3865 | 100 | Minus |
CG2924-RB | 2717 | CG2924-RB | 1148..1920 | 791..19 | 3865 | 100 | Minus |
CG2924-RE | 2928 | CG2924-RE | 1087..1859 | 791..19 | 3865 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:27:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2266247..2266539 | 275..567 | 1465 | 100 | Plus |
X | 23542271 | X | 2266035..2266186 | 126..277 | 760 | 100 | Plus |
X | 23542271 | X | 2266820..2266968 | 643..791 | 745 | 100 | Plus |
X | 23542271 | X | 2265876..2265955 | 47..126 | 400 | 100 | Plus |
X | 23542271 | X | 2266596..2266673 | 567..644 | 390 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:27:28 has no hits.
BO18080.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:18:00 Download gff for
BO18080.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2924-PC | 419..1194 | 15..791 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:21:47 Download gff for
BO18080.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2924-RA | 1087..1862 | 15..791 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:21:40 Download gff for
BO18080.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2924-RE | 1087..1862 | 15..791 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:21:40 Download gff for
BO18080.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2266036..2266184 | 127..275 | 100 | <- | Plus |
X | 2266248..2266539 | 276..567 | 100 | <- | Plus |
X | 2266597..2266671 | 568..642 | 100 | <- | Plus |
X | 2266820..2266968 | 643..791 | 100 | | Plus |
X | 2265784..2265816 | 15..47 | 93 | <- | Plus |
X | 2265877..2265955 | 48..126 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:21:47 Download gff for
BO18080.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2159817..2159849 | 15..47 | 93 | <- | Plus |
arm_X | 2159910..2159988 | 48..126 | 100 | <- | Plus |
arm_X | 2160069..2160217 | 127..275 | 100 | <- | Plus |
arm_X | 2160281..2160572 | 276..567 | 100 | <- | Plus |
arm_X | 2160630..2160704 | 568..642 | 100 | <- | Plus |
arm_X | 2160853..2161001 | 643..791 | 100 | | Plus |
BO18080.5prime Sequence
914 bp (774 high quality bases) assembled on 2006-10-13
> BO18080.5prime
GAAGTTATCAGTCGACATGGCGTGCCTTAACACCCTGAAGCAGGAAATCA
AAACGCTAGAGAAGATCTTCCCGAAGAACCACGAGCGCTTTCAGATCCTC
AATTCCAGCGTCGACGAACTGCTCTGCCGTTTTATCGATAAGAATGGAAA
GCGGTACGATATTCACGCCAACATAACGGAAACGTATCCCTCATCGCCGC
CAGTTTGGTTCGCCGAAAGCGAGGAGACGAGCGTCACAAATGCTGTTCAA
ATACTTAGCAATACGAATGGACGTGATAATCACGTGATCAATCAGGTGGG
CATACTGCTGCGTGAGCTGTGCCGCCTTCACAACGTTCCACTGCCACCCG
ACATCGATAATTTGGCTCTGCCGCTGCAAACGCCGCCGCCATCCGCTTCC
CCCCTTCGCTGCGAGCAGAGACCAGGTGGTGGTGGAGCGGGGGGCGGTGG
CGGACCCCACGGCAACGAGGAGACCGATTCGGATCAGGAGGAGATCGAGG
ATCCCATCGGCGAGAGCGAACAGGAGAGCGAGGGCGATGAGGACTTGCCG
CTGGAAATGGATGATGTACGCAGTACAAGCAAGAAGGACGACATGGAAGT
GGAACACCTAGCGACTCTAGAAAAACTGCGTCAAAGTCAGAGACAAGACT
ATCTAAAAGGTTCCGTTTCGGGTTCCGTGCAGGCAACCGATCGCTTAATG
AAGGAATTACGCGACATTTATCGCTCAGACGCCTTCAAAAAGAACATGTA
TTCTATTGAGCTCGTCAATGAGTCGATTTACGAATGGAACATTCGCCTCA
AGTCTGTCGACCCGGACAGTCCGCTGCACAGTGATCTGCAAATGCTCAAG
GAGAAAGAGGGCAAGGACAGCATACTGCTCAACATCCTGTTCAAAGAGAC
GTATCCCTTCGAGC
BO18080.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2924-PA | 1194 | CG2924-RA | 1..898 | 17..914 | 4440 | 99.7 | Plus |
CG2924-PC | 1194 | CG2924-RC | 1..898 | 17..914 | 4440 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:43:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2924-RD | 2606 | CG2924-RD | 619..1516 | 17..914 | 4460 | 99.8 | Plus |
CG2924-RB | 2717 | CG2924-RB | 730..1627 | 17..914 | 4460 | 99.8 | Plus |
CG2924-RE | 2928 | CG2924-RE | 669..1566 | 17..914 | 4460 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:43:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2266820..2267110 | 583..293 | 1455 | 100 | Minus |
X | 23542271 | X | 2266284..2266539 | 914..659 | 1250 | 99.2 | Minus |
X | 23542271 | X | 2268937..2269099 | 179..17 | 815 | 100 | Minus |
X | 23542271 | X | 2267174..2267294 | 298..178 | 605 | 100 | Minus |
X | 23542271 | X | 2266596..2266673 | 659..582 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-30 17:43:31 has no hits.
BO18080.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:18:01 Download gff for
BO18080.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2924-PC | 1..898 | 17..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:49:35 Download gff for
BO18080.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2924-RA | 663..1566 | 9..914 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:04:30 Download gff for
BO18080.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2924-RE | 663..1566 | 9..914 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:04:30 Download gff for
BO18080.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2266284..2266539 | 659..914 | 99 | <- | Minus |
X | 2266597..2266671 | 584..658 | 100 | <- | Minus |
X | 2266820..2267107 | 296..583 | 100 | <- | Minus |
X | 2267177..2267293 | 179..295 | 100 | <- | Minus |
X | 2268938..2269105 | 9..178 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:49:35 Download gff for
BO18080.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2160317..2160572 | 659..914 | 99 | <- | Minus |
arm_X | 2160630..2160704 | 584..658 | 100 | <- | Minus |
arm_X | 2160853..2161140 | 296..583 | 100 | <- | Minus |
arm_X | 2161210..2161326 | 179..295 | 100 | <- | Minus |
arm_X | 2162971..2163138 | 9..178 | 97 | | Minus |
BO18080.complete Sequence
1225 bp assembled on 2006-10-11
GenBank Submission: FJ634309
> BO18080.complete
GAAGTTATCAGTCGACATGGCGTGCCTTAACACCCTGAAGCAGGAAATCA
AAACGCTAGAGAAGATCTTCCCGAAGAACCACGAGCGCTTTCAGATCCTC
AATTCCAGCGTCGACGAACTGCTCTGCCGTTTTATCGATAAGAATGGAAA
GCGGTACGATATTCACGCCAACATAACGGAAACGTATCCCTCATCGCCGC
CAGTTTGGTTCGCCGAAAGCGAGGAGACGAGCGTCACAAATGCTGTTCAA
ATACTTAGCAATACGAATGGACGTGATAATCACGTGATCAATCAGGTGGG
CATACTGCTGCGTGAGCTGTGCCGCCTTCACAACGTTCCACTGCCACCCG
ACATCGATAATTTGGCTCTGCCGCTGCAAACGCCGCCGCCATCCGCTTCC
CCCCTTCGCTGCGAGCAGAGACCAGGTGGTGGTGGAGCGGGGGGCGGTGG
CGGACCCCACGGCAACGAGGAGACCGATTCGGATCAGGAGGAGATCGAGG
ATCCCATCGGCGAGAGCGAACAGGAGAGCGAGGGCGATGAGGACTTGCCG
CTGGAAATGGATGATGTACGCAGTACAAGCAAGAAGGACGACATGGAAGT
GGAACACCTAGCGACTCTAGAAAAACTGCGTCAAAGTCAGAGACAAGACT
ATCTAAAAGGTTCCGTTTCGGGTTCCGTGCAGGCAACCGATCGCTTAATG
AAGGAATTACGCGACATTTATCGCTCAGACGCCTTCAAAAAGAACATGTA
TTCTATTGAGCTCGTCAATGAGTCGATTTACGAATGGAACATTCGCCTCA
AGTCTGTCGACCCGGACAGTCCGCTGCACAGTGATCTGCAAATGCTCAAG
GAGAAGGAGGGCAAGGACAGCATACTGCTCAACATCCTGTTCAAGGAGAC
GTATCCCTTCGAGCCGCCATTTGTGCGCGTTGTCCATCCGATTATCTCAG
GCGGCTATGTGCTCATCGGTGGTGCCATCTGCATGGAATTGCTGACCAAA
CAGGGCTGGAGCTCGGCATATACCGTGGAAGCGGTTATCATGCAAATTGC
AGCCACTCTCGTCAAGGGAAAGGCGCGCATCCAATTCGGGGCTACCAAAG
CACTGACCCAGGGCCAATACAGTTTGGCTCGAGCCCAGCAGAGCTTCAAA
TCTCTGGTGCAGATTCACGAAAAGAATGGATGGTTCACCCCGCCCAAGGA
AGATGGCGCAAGCTTTCTAGACCAT
BO18080.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:42:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2924-RD | 1194 | CG2924-PD | 1..1191 | 17..1207 | 5955 | 100 | Plus |
CG2924-RB | 1194 | CG2924-PB | 1..1191 | 17..1207 | 5955 | 100 | Plus |
CG2924-RE | 1194 | CG2924-PE | 1..1191 | 17..1207 | 5955 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:42:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2924-RD | 2606 | CG2924-RD | 619..1809 | 17..1207 | 5955 | 100 | Plus |
CG2924-RB | 2717 | CG2924-RB | 730..1920 | 17..1207 | 5955 | 100 | Plus |
CG2924-RE | 2928 | CG2924-RE | 669..1859 | 17..1207 | 5955 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:42:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2266247..2266539 | 951..659 | 1465 | 100 | Minus |
X | 23542271 | X | 2266820..2267110 | 583..293 | 1455 | 100 | Minus |
X | 23542271 | X | 2268937..2269099 | 179..17 | 815 | 100 | Minus |
X | 23542271 | X | 2266035..2266186 | 1100..949 | 760 | 100 | Minus |
X | 23542271 | X | 2267174..2267294 | 298..178 | 605 | 100 | Minus |
X | 23542271 | X | 2265876..2265955 | 1179..1100 | 400 | 100 | Minus |
X | 23542271 | X | 2266596..2266673 | 659..582 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:42:22 has no hits.
BO18080.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:45 Download gff for
BO18080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2924-RC | 1..1194 | 17..1211 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:41:04 Download gff for
BO18080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2924-RC | 608..1807 | 9..1211 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:29:57 Download gff for
BO18080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2924-RA | 669..1859 | 17..1209 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:45 Download gff for
BO18080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2924-RC | 608..1807 | 9..1211 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:36:34 Download gff for
BO18080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2924-RE | 669..1859 | 17..1209 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:36:34 Download gff for
BO18080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2266248..2266539 | 659..950 | 100 | <- | Minus |
X | 2266597..2266671 | 584..658 | 100 | <- | Minus |
X | 2265786..2265816 | 1179..1209 | 93 | <- | Minus |
X | 2265877..2265955 | 1100..1178 | 100 | <- | Minus |
X | 2266036..2266184 | 951..1099 | 100 | <- | Minus |
X | 2266820..2267107 | 296..583 | 100 | <- | Minus |
X | 2267177..2267293 | 179..295 | 100 | <- | Minus |
X | 2268938..2269099 | 17..178 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:29:57 Download gff for
BO18080.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2159819..2159849 | 1179..1209 | 93 | <- | Minus |
arm_X | 2159910..2159988 | 1100..1178 | 100 | <- | Minus |
arm_X | 2160069..2160217 | 951..1099 | 100 | <- | Minus |
arm_X | 2160281..2160572 | 659..950 | 100 | <- | Minus |
arm_X | 2160630..2160704 | 584..658 | 100 | <- | Minus |
arm_X | 2160853..2161140 | 296..583 | 100 | <- | Minus |
arm_X | 2161210..2161326 | 179..295 | 100 | <- | Minus |
arm_X | 2162971..2163132 | 17..178 | 100 | | Minus |
BO18080.pep Sequence
Translation from 16 to 1225
> BO18080.pep
MACLNTLKQEIKTLEKIFPKNHERFQILNSSVDELLCRFIDKNGKRYDIH
ANITETYPSSPPVWFAESEETSVTNAVQILSNTNGRDNHVINQVGILLRE
LCRLHNVPLPPDIDNLALPLQTPPPSASPLRCEQRPGGGGAGGGGGPHGN
EETDSDQEEIEDPIGESEQESEGDEDLPLEMDDVRSTSKKDDMEVEHLAT
LEKLRQSQRQDYLKGSVSGSVQATDRLMKELRDIYRSDAFKKNMYSIELV
NESIYEWNIRLKSVDPDSPLHSDLQMLKEKEGKDSILLNILFKETYPFEP
PFVRVVHPIISGGYVLIGGAICMELLTKQGWSSAYTVEAVIMQIAATLVK
GKARIQFGATKALTQGQYSLARAQQSFKSLVQIHEKNGWFTPPKEDGASF
LDH
BO18080.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:06:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2924-PD | 397 | CG2924-PD | 1..397 | 1..397 | 2068 | 100 | Plus |
CG2924-PB | 397 | CG2924-PB | 1..397 | 1..397 | 2068 | 100 | Plus |
CG2924-PE | 397 | CG2924-PE | 1..397 | 1..397 | 2068 | 100 | Plus |
CG2924-PA | 397 | CG2924-PA | 1..397 | 1..397 | 2068 | 100 | Plus |
CG4502-PA | 306 | CG4502-PA | 140..306 | 224..397 | 452 | 51.7 | Plus |