Clone Sequence Records
BO18082.3prime Sequence
838 bp (737 high quality bases) assembled on 2006-10-13
> BO18082.3prime
ATGGTCTAGAAAGCTTGCAACATGATCCAACTTCAGTGCGTCCACTGAGG
TGCCCTCCGCCTCCGCCTTCTGCGCGTAGAAGCCGTCGTAAGTGTTCGAC
TGCTTCTGCAGCTTGTTTAGCTGCTCGAAGGCAGCCTCCTGGATCTTCCG
GAGCTCCGCCTCCGCCTTGCGCTTGGCCTCGTTCTCCTCGATCTGGTAGG
CCAGCAGCTCGGCGGTGGCCGCTGCCCTTTCCGCCGCCGGATCCTGGTAT
TGCTCGAAATTCTTCGGCTGCTGGCGCTTCACCGCGGTGCTGGACTCCGC
CTTGGGTCCAGCCGGCTCCTTGGGCTTGCCAGGCGGACGGGGCGGCTTGT
CGTGCACCTTCATATGCGTCTTGAGCACCTGCTCCTGCCGGAAATGCTTG
CCGCACACCTTGCACTCGTAAGGCTTTTCGCCAGTGTGTATGTACTCGTG
GTGCCGCAGGTACTGCTTCTTGGCGAATCTCTTCGGGCAGAAGCGGCAGC
AGAAGTCTTTGACCTTTTGATGCACCACCTTGTAGTGCAGCTTCATGTTG
CTCACGTGATTGAAGCCCTTGCCGCAGTCCGGGCAGATATGCTGGCCCTC
CTTCTTGGTGAAGTTCACTTGCGGCGACCACGAGGGCAGGTTGACCGATG
GAATTGGATTGGCCACCGTTCCCGCCAACTGAGCAATGTCCACCCGCTCG
ACGCGACCACGCAGGTGCGGACTGGGCTTGGCTATTGTCGAGGATCCACT
GGCCCCGTCGCCCATTAAGGCATTGGTCCCCTGCGTCTTGGGCAAATCAC
GCTTCTCGTGCGTCTTCAAATGCTTGGTTAGGCCCTTT
BO18082.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:51:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10270-PA | 2325 | D19B-RA | 1504..2322 | 837..19 | 4095 | 100 | Minus |
| CG10269-PA | 2538 | D19A-RA | 1901..1955 | 638..584 | 225 | 96.3 | Minus |
| CG10269-PA | 2538 | D19A-RA | 2290..2375 | 246..161 | 205 | 89.5 | Minus |
| CG10274-PA | 1545 | CG10274-RA | 817..869 | 633..581 | 165 | 92.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:09:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| D19B-RA | 2685 | CG10270-RA | 1623..2441 | 837..19 | 4095 | 100 | Minus |
| D19A-RA | 3233 | CG10269-RA | 1978..2340 | 705..343 | 645 | 79.2 | Minus |
| CG10274-RB | 3034 | CG10274-RB | 1921..2177 | 638..382 | 370 | 77.7 | Minus |
| D19A-RA | 3233 | CG10269-RA | 2434..2580 | 246..100 | 360 | 83 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:09:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6182420..6183238 | 19..837 | 4095 | 100 | Plus |
| 3L | 28110227 | 3L | 6186723..6187085 | 343..705 | 645 | 78.5 | Plus |
| 3L | 28110227 | 3L | 6179534..6179790 | 382..638 | 370 | 76.3 | Plus |
| 3L | 28110227 | 3L | 6186483..6186629 | 100..246 | 360 | 83 | Plus |
| 3L | 28110227 | 3L | 6179181..6179308 | 122..249 | 190 | 76.6 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:09:11 has no hits.
BO18082.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:18:01 Download gff for
BO18082.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10270-PA | 1502..2325 | 16..838 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:48:06 Download gff for
BO18082.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| D19B-RA | 1621..2446 | 13..838 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:23:51 Download gff for
BO18082.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| D19B-RA | 1621..2446 | 13..838 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:23:51 Download gff for
BO18082.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6182415..6183238 | 13..838 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:48:06 Download gff for
BO18082.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6175515..6176338 | 13..838 | 99 | | Plus |
BO18082.5prime Sequence
803 bp (752 high quality bases) assembled on 2006-10-13
> BO18082.5prime
GAAGTTATCAGTCGACATGAATGAGGAGAGCCAGTACTCCATACACACGG
TGTGCCGCACCTGCCTGTCCACGGTGGACGACTCGGCGGCCTACGATCTG
TTCCGAGTGCCCGGTCTGGCCAAAAAGCTGTGCGTGTGCACCTCCTTGTC
CGTGGAGCAGGCGGATGGCTTTCCCAAGAACCTGTGCAATGTCTGCTTCT
CCAAGCTGAACGACCTGCACGACTTTCAGAAGCAGTGCGTCGATTCCGTT
CAAAAGTTCCAAGATCTGGTGGCCAGCAACGCGTTCGCCTGCCAAACAAA
CTTCGATGTTCTGGACACCAGTGCCGCTGTGGCGGATCTGCCGGGCGAGG
AAGAGGACAACGTGCACTTCGATCCGCTGCTCAACTCCAAGATCGAGATC
ATTGAGAACGAGGAGGACGTCTTCAAGATGCTCGAGTCCGTCGAAAAGGA
GGTCGAAGAGGTGGAGATGGAGATGGAACAGCCGTTTGGCCGAGTATCTC
AGGATGACTCCTTCGAGAGCGGCAACGACAACGACCTCGACGCAGACTTC
CAAATCAGTAGTGACGACGACATTCCACTGGCCCAGCGCAGCCGGCGTGG
AGCCACTCGTGGTTCCAAGGCGAAGGGCAAGCCGAAGTCGGCTGCCAAGC
GACAGGAGGAGGAATCCGAGGAGTCCGAGGAGACCAGCTCATCAGACGAC
TCCGATGGCAATCCGAAGGACAAGCCCAAACGCAAGAGGATTCCTGCTAC
GGAGCGGGATCGCCACCGCCTGATTGACTGCCACATCTGCCACCAGAAGT
TCA
BO18082.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:51:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10270-PA | 2325 | D19B-RA | 1..787 | 17..803 | 3935 | 100 | Plus |
| CG10269-PA | 2538 | D19A-RA | 185..263 | 201..279 | 295 | 94.9 | Plus |
| CG10269-PA | 2538 | D19A-RA | 388..451 | 404..467 | 145 | 89 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 01:42:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| D19B-RA | 2685 | CG10270-RA | 120..906 | 17..803 | 3935 | 100 | Plus |
| D19A-RA | 3233 | CG10269-RA | 253..600 | 125..472 | 690 | 80.2 | Plus |
| CG10274-RB | 3034 | CG10274-RB | 177..348 | 110..281 | 260 | 76.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 01:42:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6184015..6184801 | 803..17 | 3935 | 100 | Minus |
| 3L | 28110227 | 3L | 6188524..6188871 | 472..125 | 690 | 79.9 | Minus |
| 3L | 28110227 | 3L | 6181482..6181653 | 281..110 | 260 | 76.7 | Minus |
| 3L | 28110227 | 3L | 6181274..6181379 | 471..366 | 200 | 79.2 | Minus |
Blast to na_te.dros performed on 2015-02-05 01:42:48 has no hits.
BO18082.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:18:01 Download gff for
BO18082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10270-PA | 1..786 | 17..802 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:04:43 Download gff for
BO18082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| D19B-RA | 120..905 | 17..802 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:59:42 Download gff for
BO18082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| D19B-RA | 120..905 | 17..802 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 02:59:42 Download gff for
BO18082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6184016..6184801 | 17..802 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:04:43 Download gff for
BO18082.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6177116..6177901 | 17..802 | 100 | | Minus |
BO18082.complete Sequence
2356 bp assembled on 2008-08-14
GenBank Submission: FJ634310
> BO18082.complete
GAAGTTATCAGTCGACATGAATGAGGAGAGCCAGTACTCCATACACACGG
TGTGCCGCACCTGCCTGTCCACGGTGGACGACTCGGCGGCCTACGATCTG
TTCCGAGTGCCCGGTCTGGCCAAAAAGCTGTGCGTGTGCACCTCCTTGTC
CGTGGAGCAGGCGGATGGCTTTCCCAAGAACCTGTGCAATGTCTGCTTCT
CCAAGCTGAACGACCTGCACGACTTTCAGAAGCAGTGCGTCGATTCCGTT
CAAAAGTTCCAAGATCTGGTGGCCAGCAACGCGTTCGCCTGCCAAACAAA
CTTCGATGTTCTGGACACCAGTGCCGCTGTGGCGGATCTGCCGGGCGAGG
AAGAGGACAACGTGCACTTCGATCCGCTGCTCAACTCCAAGATCGAGATC
ATTGAGAACGAGGAGGACGTCTTCAAGATGCTCGAGTCCGTCGAAAAGGA
GGTCGAAGAGGTGGAGATGGAGATGGAACAGCCGTTTGGCCGAGTATCTC
AGGATGACTCCTTCGAGAGCGGCAACGACAACGACCTCGACGCAGACTTC
CAAATCAGTAGTGACGACGACATTCCACTGGCCCAGCGCAGCCGGCGTGG
AGCCACTCGTGGTTCCAAGGCGAAGGGCAAGCCGAAGTCGGCTGCCAAGC
GACAGGAGGAGGAATCCGAGGAGTCCGAGGAGACCAGCTCATCAGACGAC
TCCGATGGCAATCCGAAGGACAAGCCCAAACGCAAGAGGATTCCTGCTAC
GGAGCGGGATCGCCACCGCCTGATTGACTGCCACATCTGCCACCAGAAGT
TCAAGAAGGCGATTCGCTACGAGGAGCACATGAAGCATCACAACGACTTG
CTACCCTTCCAGTGCACCGTCGAGAGTTGCCGAAAAGGCTTTACCACCGC
CAATGGACTGCGCGTCCATGTGGAGCACGCCCACACGGAGACATCGGCTA
TGCATCCGTGCACCTACGAGGGCTGCAACAAGTCCTTTGCCCGGCCCGTG
CTGCTCAGCTTCCACATGAAACGCGTGCACAAGGTGGACACCCCGCAGAG
GGACTTCCCCTGCACGGAGTGCGAGAAGGTCTTCCGCTGCCCCACTGCCC
TCAAGAAGCACATGTACAAGCACACGGGCGAGGAGCTGCCCTTCGCATGT
GAAATTTGCGGCAAGCGCTTCCCCATCAATAGTGTGCTGCGCGACCATCT
GCTGCGCCATGCGGGCATCAAGAACCATGTGTGCCCGTACTGCGGAGTGG
GCAAGACGACGCGCCAGGAGTGGAACAAGCACATCCTTACCCACACGAAG
GAGAAGAAGTACGAGTGCCGGCAGTGCGACCACGCCTCCCACAACAAACA
GGCGCTGGCCAACCACGTGAAGGTGGTGCACGAGAAGCGCAAGGACTTTG
CCTGCCAGTACTGCGGAAAGACCTTTGGCAAGTCGCACGCCTGCAAGATT
CACGAGAGAAGTCATACCGGCGAAAAGTGCTGCGAGTGCAAGATCTGCGG
CAAGGTGTTCCTCTTCGAGAAGGGCCTAACCAAGCATTTGAAGACGCACG
AGAAGCGTGATTTGCCCAAGACGCAGGGGACCAATGCCTTAATGGGCGAC
GGGGCCAGTGGATCCTCGACAATAGCCAAGCCCAGTCCGCACCTGCGTGG
TCGCGTCGAGCGGGTGGACATTGCTCAGTTGGCGGGAACGGTGGCCAATC
CAATTCCATCGGTCAACCTGCCCTCGTGGTCGCCGCAAGTGAACTTCACC
AAGAAGGAGGGCCAGCATATCTGCCCGGACTGCGGCAAGGGCTTCAATCA
CGTGAGCAACATGAAGCTGCACTACAAGGTGGTGCATCAAAAGGTCAAAG
ACTTCTGCTGCCGCTTCTGCCCGAAGAGATTCGCCAAGAAGCAGTACCTG
CGGCACCACGAGTACATACACACTGGCGAAAAGCCTTACGAGTGCAAGGT
GTGCGGCAAGCATTTCCGGCAGGAGCAGGTGCTCAAGACGCATATGAAGG
TGCACGACAAGCCGCCCCGTCCGCCTGGCAAGCCCAAGGAGCCGGCTGGA
CCCAAGGCGGAGTCCAGCACCGCGGTGAAGCGCCAGCAGCCGAAGAATTT
CGAGCAATACCAGGATCCGGCGGCGGAAAGGGCAGCGGCCACCGCCGAGC
TGCTGGCCTACCAGATCGAGGAGAACGAGGCCAAGCGCAAGGCGGAGGCG
GAGCTCCGGAAGATCCAGGAGGCTGCCTTCGAGCAGCTAAACAAGCTGCA
GAAGCAGTCGAACACTTACGACGGCTTCTACGCGCAGAAGGCGGAGGCGG
AGGGCACCTCAGTGGACGCACTGAAGTTGGATCATGTTGCAAGCTTTCTA
GACCAT
BO18082.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:44:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| D19B-RA | 2325 | CG10270-PA | 1..2322 | 17..2338 | 11610 | 100 | Plus |
| D19A-RA | 2538 | CG10269-PA | 823..1622 | 764..1554 | 1715 | 81.2 | Plus |
| CG10274-RB | 2592 | CG10274-PB | 762..1600 | 730..1559 | 1010 | 75 | Plus |
| D19A-RA | 2538 | CG10269-PA | 109..456 | 125..472 | 690 | 79.9 | Plus |
| D19A-RA | 2538 | CG10269-PA | 1834..2196 | 1652..2014 | 645 | 78.5 | Plus |
| D19A-RA | 2538 | CG10269-PA | 2290..2436 | 2111..2257 | 360 | 83 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:44:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| D19B-RA | 2685 | CG10270-RA | 120..2441 | 17..2338 | 11610 | 100 | Plus |
| D19A-RA | 3233 | CG10269-RA | 967..1766 | 764..1554 | 1715 | 81.2 | Plus |
| CG10274-RB | 3034 | CG10274-RB | 824..1662 | 730..1559 | 1010 | 75 | Plus |
| D19A-RA | 3233 | CG10269-RA | 253..600 | 125..472 | 690 | 79.9 | Plus |
| D19A-RA | 3233 | CG10269-RA | 1978..2340 | 1652..2014 | 645 | 78.5 | Plus |
| D19A-RA | 3233 | CG10269-RA | 2434..2580 | 2111..2257 | 360 | 83 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:44:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6182420..6183872 | 2338..886 | 7265 | 100 | Minus |
| 3L | 28110227 | 3L | 6183930..6184801 | 888..17 | 4360 | 100 | Minus |
| 3L | 28110227 | 3L | 6187297..6187796 | 1554..1055 | 1435 | 85.8 | Minus |
| 3L | 28110227 | 3L | 6180181..6180623 | 1492..1050 | 775 | 78.3 | Minus |
| 3L | 28110227 | 3L | 6188524..6188871 | 472..125 | 690 | 79.9 | Minus |
| 3L | 28110227 | 3L | 6186723..6187085 | 2014..1652 | 645 | 78.5 | Minus |
| 3L | 28110227 | 3L | 6190735..6191124 | 1103..1492 | 435 | 74.1 | Plus |
| 3L | 28110227 | 3L | 6180870..6181006 | 866..730 | 370 | 84.7 | Minus |
| 3L | 28110227 | 3L | 6179534..6179790 | 1975..1719 | 370 | 76.3 | Minus |
| 3L | 28110227 | 3L | 6186483..6186629 | 2257..2111 | 360 | 83 | Minus |
| 3L | 28110227 | 3L | 6188055..6188157 | 866..764 | 350 | 89.3 | Minus |
| 3L | 28110227 | 3L | 6181482..6181653 | 281..110 | 260 | 76.7 | Minus |
| 3L | 28110227 | 3L | 6181274..6181379 | 471..366 | 200 | 79.2 | Minus |
| 3L | 28110227 | 3L | 6179181..6179308 | 2235..2108 | 190 | 76.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:44:34 has no hits.
BO18082.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:43:41 Download gff for
BO18082.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| D19B-RA | 238..2564 | 17..2344 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:36:49 Download gff for
BO18082.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| D19B-RA | 120..2441 | 17..2340 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:09:16 Download gff for
BO18082.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| D19B-RA | 238..2559 | 17..2340 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:07:18 Download gff for
BO18082.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| D19B-RA | 120..2441 | 17..2340 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:07:18 Download gff for
BO18082.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6182417..6183870 | 888..2340 | 99 | <- | Minus |
| 3L | 6183931..6184801 | 17..887 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:36:49 Download gff for
BO18082.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6175517..6176970 | 888..2340 | 99 | <- | Minus |
| arm_3L | 6177031..6177901 | 17..887 | 100 | | Minus |
BO18082.pep Sequence
Translation from 16 to 2356
> BO18082.pep
MNEESQYSIHTVCRTCLSTVDDSAAYDLFRVPGLAKKLCVCTSLSVEQAD
GFPKNLCNVCFSKLNDLHDFQKQCVDSVQKFQDLVASNAFACQTNFDVLD
TSAAVADLPGEEEDNVHFDPLLNSKIEIIENEEDVFKMLESVEKEVEEVE
MEMEQPFGRVSQDDSFESGNDNDLDADFQISSDDDIPLAQRSRRGATRGS
KAKGKPKSAAKRQEEESEESEETSSSDDSDGNPKDKPKRKRIPATERDRH
RLIDCHICHQKFKKAIRYEEHMKHHNDLLPFQCTVESCRKGFTTANGLRV
HVEHAHTETSAMHPCTYEGCNKSFARPVLLSFHMKRVHKVDTPQRDFPCT
ECEKVFRCPTALKKHMYKHTGEELPFACEICGKRFPINSVLRDHLLRHAG
IKNHVCPYCGVGKTTRQEWNKHILTHTKEKKYECRQCDHASHNKQALANH
VKVVHEKRKDFACQYCGKTFGKSHACKIHERSHTGEKCCECKICGKVFLF
EKGLTKHLKTHEKRDLPKTQGTNALMGDGASGSSTIAKPSPHLRGRVERV
DIAQLAGTVANPIPSVNLPSWSPQVNFTKKEGQHICPDCGKGFNHVSNMK
LHYKVVHQKVKDFCCRFCPKRFAKKQYLRHHEYIHTGEKPYECKVCGKHF
RQEQVLKTHMKVHDKPPRPPGKPKEPAGPKAESSTAVKRQQPKNFEQYQD
PAAERAAATAELLAYQIEENEAKRKAEAELRKIQEAAFEQLNKLQKQSNT
YDGFYAQKAEAEGTSVDALKLDHVASFLDH
BO18082.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:01:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| D19B-PA | 774 | CG10270-PA | 1..774 | 1..774 | 4195 | 100 | Plus |
| D19A-PA | 845 | CG10269-PA | 1..845 | 1..774 | 2928 | 65.8 | Plus |
| CG10274-PB | 863 | CG10274-PB | 6..863 | 3..774 | 2536 | 57.4 | Plus |
| CG7386-PA | 662 | CG7386-PA | 2..631 | 4..683 | 1670 | 47.2 | Plus |
| CG10147-PB | 448 | CG10147-PB | 7..437 | 13..519 | 556 | 28.1 | Plus |
