Clone Sequence Records
BO18083.3prime Sequence
809 bp (793 high quality bases) assembled on 2006-10-13
> BO18083.3prime
ATGGTCTAGAAAGCTTGCGTGCATGTTGCCCGATGGCAGACCCAAGGCGG
CGCCCAGGTTAAGTCCTGCAGGGACACCCACTCCTACTCCCGCGCTCACT
CCTGATCCCACGTTGCCCTCGCTCTCACTTTTCCAGGACGACACGGGTAT
GTGAGGAGCTGGGAGGCAGTTGCGCAGCGTCTGCACGATCTGAATGGTGT
CCATGAGGGTTTTCTGCAGACTCTCACTCTGCTTGCCGTAGGGCTTGCAC
ATCGAGGGACGTATGTAGGTTTTCATCCGCGACATGTTTCGCATCAGCTC
CGCAAAGATGCGCACTATCTTGTCCTGACCCACGGCCAAGTGATCCATTC
GATTGGCATCGCCGGTGGCCCAGGCTCCGTTGTGCAGCGCCAGCAGATCC
TTATTCGATTCTATTGAGTCCAGATTGGAACGCAAGGAGTCGGCGACGTT
CTTGTGGGTAATCTGGTCCAACGAGGAATGAGAGGAAGACGAAGAGGATG
AGTGTGGCGACTGCGATGGCGGTGGCAAGGGATGGTGTCCGTGATGGGCC
TGCGGGCCGGCTGCAGCTCCTCCTGCAGCAGATGTAGTCGTAGCCGCCGG
AGTCTGCTGATTGGCGGCGACGGCGGCAGCCACTGCCTGCGATTGCATCA
GGCCTTGGATTTGAAGATTGGCGGCTGCAGCCGCAACGGCCATGGGATCA
AAGTGCTTTGGATCCAGCTGGGCGAAAACTCGCTGCTTTTCCAGCGGACT
GAGGTGGTTGCTAAGCTTCTCTAAATTTTGCTGGGCGAGGACACGGTTTT
GCTGTTGGA
BO18083.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:51:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5466-PA | 1785 | CG5466-RA | 992..1782 | 809..19 | 3955 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:43:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5466-RA | 2907 | CG5466-RA | 1200..1990 | 809..19 | 3955 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:43:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20619250..20619628 | 809..431 | 1895 | 100 | Minus |
3R | 32079331 | 3R | 20619861..20620082 | 431..210 | 1110 | 100 | Minus |
3R | 32079331 | 3R | 20620162..20620352 | 209..19 | 955 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:43:51 has no hits.
BO18083.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:18:02 Download gff for
BO18083.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5466-PA | 993..1785 | 18..808 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:15:29 Download gff for
BO18083.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5466-RA | 1201..1990 | 19..808 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:41:43 Download gff for
BO18083.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5466-RA | 1201..1990 | 19..808 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:41:43 Download gff for
BO18083.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20619251..20619628 | 431..808 | 100 | -> | Minus |
3R | 20619862..20620082 | 210..430 | 100 | -> | Minus |
3R | 20620162..20620352 | 19..209 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:15:29 Download gff for
BO18083.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16444973..16445350 | 431..808 | 100 | -> | Minus |
arm_3R | 16445584..16445804 | 210..430 | 100 | -> | Minus |
arm_3R | 16445884..16446074 | 19..209 | 100 | | Minus |
BO18083.5prime Sequence
864 bp (720 high quality bases) assembled on 2006-10-13
> BO18083.5prime
GAAGTTATCAGTCGACATGAACAATTTGGAGCACTCCAAGCATTTCTATC
CTGATAACTACAAATTGGATCTGTCTGAGACCATGAAGGCGGCTCTGTCC
AAAGGACCCGGTGGTGGTGCCGGTGGCGGGGGCGTGGCAGGCGGAGATAT
GCTGCCGCAGCCAAATGCTGGAATGCCAGGAGTGGGCTATGTTACGGAAA
AGCTGTACATGCTGCTGCAGCTGTATCTGCAGAACAAAGGCTGGAATCCC
AGTGCTGAGCTGCTGCAGTGCTTCAGCGATCTCAAGGACAATGCCATGCT
GCCCAGCGCCGCCTATCTGCAAGTCCTGGCCAACCGCTTAACCCTGGACT
CCCAGGGACGGCTAATACTGCGCGACAATGGAAAGATTGTCTTGCCCTTT
GAGCATTTTGCCAATGCGGTCATGCTAAAGCACATGTCAGGTCCGCACGG
CCTGCACCTTAGTGTCGATGCCACGGTGAGGGCAGTCATTGAGTCGTACA
CCATCGGTCGGGATCAGTTCGGCATGGAGAAAGAGTTCATCATCGAGGTG
GTGCAGTCCTGCCCAAGTCCCGCATGTCGCTACTATAAAAACCACATGGG
AATTTCGCCCATGCCGTTCATGGAGCAGCAGTATCCGGGCGTAAACACTC
CCGAGTTCCTGCAGCGCTTGGCGCATCTGCCGCCTGGGGGAGCAGCCGGA
TCTGGGCCAGGAGGCTCCGCAGCCGGATCCACCTCCAGCGTGGCAAGCAG
CTCGAGTTCGGCGAACGTGGAAATCGATCTGTCCAAGTCGACGGGCGCGA
AGGTGCCCCAGGTGCCGGTGCCGCCGCAGTTGCAGCACCTGACCAAGCAG
CAGCAGAGCACTCT
BO18083.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:51:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5466-PA | 1785 | CG5466-RA | 1..848 | 17..864 | 4240 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:37:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5466-RA | 2907 | CG5466-RA | 209..1056 | 17..864 | 4240 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:37:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20618564..20619106 | 322..864 | 2715 | 100 | Plus |
3R | 32079331 | 3R | 20618214..20618507 | 28..321 | 1470 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 13:37:44 has no hits.
BO18083.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:18:02 Download gff for
BO18083.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5466-PA | 1..848 | 17..864 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:46:15 Download gff for
BO18083.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5466-RA | 200..1056 | 9..864 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:02:32 Download gff for
BO18083.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5466-RA | 200..1056 | 9..864 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:02:32 Download gff for
BO18083.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20618214..20618507 | 28..321 | 100 | -> | Plus |
3R | 20618564..20619106 | 322..864 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:46:15 Download gff for
BO18083.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16443936..16444229 | 28..321 | 100 | -> | Plus |
arm_3R | 16444286..16444828 | 322..864 | 100 | | Plus |
BO18083.complete Sequence
1816 bp assembled on 2007-03-23
GenBank Submission: FJ634311
> BO18083.complete
GAAGTTATCAGTCGACATGAACAATTTGGAGCACTCCAAGCATTTCTATC
CTGATAACTACAAATTGGATCTGTCTGAGACCATGAAGGCGGCTCTGTCC
AAAGGACCCGGTGGTGGTGCCGGTGGCGGGGGCGTGGCAGGCGGAGATAT
GCTGCCGCAGCCAAATGCTGGAATGCCAGGAGTGGGCTATGTTACGGAAA
AGCTGTACATGCTGCTGCAGCTGTATCTGCAGAACAAAGGCTGGAATCCC
AGTGCTGAGCTGCTGCAGTGCTTCAGCGATCTCAAGGACAATGCCATGCT
GCCCAGCGCCGCCTATCTGCAAGTCCTGGCCAACCGCTTAACCCTGGACT
CCCAGGGACGGCTAATACTGCGCGACAATGGAAAGATTGTCTTGCCCTTT
GAGCATTTTGCCAATGCGGTCATGCTAAAGCACATGTCAGGTCCGCACGG
CCTGCACCTTAGTGTCGATGCCACGGTGAGGGCAGTCATTGAGTCGTACA
CCATCGGTCGGGATCAGTTCGGCATGGAGAAAGAGTTCATCATCGAGGTG
GTGCAGTCCTGCCCAAGTCCCGCATGTCGCTACTATAAAAACCACATGGG
AATTTCGCCCATGCCGTTCATGGAGCAGCAGTATCCGGGCGTAAACACTC
CCGAGTTCCTGCAGCGCTTGGCGCATCTGCCGCCTGGGGGAGCAGCCGGA
TCTGGGCCAGGAGGCTCCGCAGCCGGATCCACCTCCAGCGTGGCAAGCAG
CTCGAGTTCGGCGAACGTGGAAATCGATCTGTCCAAGTCGACGGGCGCGA
AGGTGCCCCAGGTGCCGGTGCCGCCGCAGTTGCAGCACCTGACCAAGCAG
CAGCAGAGCACTCTCCAGACGCAGCTCTCCCAGATCAGTGCTGCCGCCGC
TCATCATCAACAACAACAACAGCAGCAACAACAGCAACAGCAGCAGCAGC
AGCAACAACAACAGCAAGCAGCAGCCAAGCACCAGCAGCAATTGACTGCT
GCCCTCATCCAACAGCAAAACCGTGTCCTCGCCCAGCAAAATTTAGAGAA
GCTTAGCAACCACCTCAGTCCGCTGGAAAAGCAGCGAGTTTTCGCCCAGC
TGGATCCAAAGCACTTTGATCCCATGGCCGTTGCGGCTGCAGCCGCCAAT
CTTCAAATCCAAGGCCTGATGCAATCGCAGGCAGTGGCTGCCGCCGTCGC
CGCCAATCAGCAGACTCCGGCGGCTACGACTACATCTGCTGCAGGAGGAG
CTGCAGCCGGCCCGCAGGCCCATCACGGACACCATCCCTTGCCACCGCCA
TCGCAGTCGCCACACTCATCCTCTTCGTCTTCCTCTCATTCCTCGTTGGA
CCAGATTACCCACAAGAACGTCGCCGACTCCTTGCGTTCCAATCTGGACT
CAATAGAATCGAATAAGGATCTGCTGGCGCTGCACAACGGAGCCTGGGCC
ACCGGCGATGCCAATCGAATGGATCACTTGGCCGTGGGTCAGGACAAGAT
AGTGCGCATCTTTGCGGAGCTGATGCGAAACATGTCGCGGATGAAAACCT
ACATACGTCCCTCGATGTGCAAGCCCTACGGCAAGCAGAGTGAGAGTCTG
CAGAAAACCCTCATGGACACCATTCAGATCGTGCAGACGCTGCGCAACTG
CCTCCCAGCTCCTCACATACCCGTGTCGTCCTGGAAAAGTGAGAGCGAGG
GCAACGTGGGATCAGGAGTGAGCGCGGGAGTAGGAGTGGGTGTCCCTGCA
GGACTTAACCTGGGCGCCGCCTTGGGTCTGCCATCGGGCAACATGCACGC
AAGCTTTCTAGACCAT
BO18083.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:07:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5466-RA | 1785 | CG5466-PA | 1..1782 | 17..1798 | 8910 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:07:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5466-RA | 2907 | CG5466-RA | 209..1990 | 17..1798 | 8910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:07:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20618564..20619628 | 322..1386 | 5325 | 100 | Plus |
3R | 32079331 | 3R | 20618214..20618507 | 28..321 | 1470 | 100 | Plus |
3R | 32079331 | 3R | 20619861..20620082 | 1386..1607 | 1110 | 100 | Plus |
3R | 32079331 | 3R | 20620162..20620352 | 1608..1798 | 955 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 16:07:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2503 | 833..990 | 274 | 69.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2823..2975 | 827..994 | 217 | 66.1 | Plus |
Porto1 | 4682 | Porto1 DOC5 4682bp | 489..591 | 854..966 | 152 | 67.3 | Plus |
BO18083.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:09:31 Download gff for
BO18083.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5466-RA | 1..1785 | 17..1799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:26:39 Download gff for
BO18083.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5466-RA | 173..1963 | 9..1798 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:53:01 Download gff for
BO18083.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5466-RA | 209..1990 | 17..1800 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:09:31 Download gff for
BO18083.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5466-RA | 173..1963 | 9..1798 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:11:54 Download gff for
BO18083.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5466-RA | 209..1990 | 17..1800 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:11:54 Download gff for
BO18083.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20618214..20618507 | 28..321 | 100 | -> | Plus |
3R | 20618564..20619628 | 322..1386 | 100 | -> | Plus |
3R | 20619862..20620082 | 1387..1607 | 100 | -> | Plus |
3R | 20620162..20620352 | 1608..1800 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:53:01 Download gff for
BO18083.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16443936..16444229 | 28..321 | 100 | -> | Plus |
arm_3R | 16444286..16445350 | 322..1386 | 100 | -> | Plus |
arm_3R | 16445584..16445804 | 1387..1607 | 100 | -> | Plus |
arm_3R | 16445884..16446074 | 1608..1800 | 98 | | Plus |
BO18083.pep Sequence
Translation from 16 to 1816
> BO18083.pep
MNNLEHSKHFYPDNYKLDLSETMKAALSKGPGGGAGGGGVAGGDMLPQPN
AGMPGVGYVTEKLYMLLQLYLQNKGWNPSAELLQCFSDLKDNAMLPSAAY
LQVLANRLTLDSQGRLILRDNGKIVLPFEHFANAVMLKHMSGPHGLHLSV
DATVRAVIESYTIGRDQFGMEKEFIIEVVQSCPSPACRYYKNHMGISPMP
FMEQQYPGVNTPEFLQRLAHLPPGGAAGSGPGGSAAGSTSSVASSSSSAN
VEIDLSKSTGAKVPQVPVPPQLQHLTKQQQSTLQTQLSQISAAAAHHQQQ
QQQQQQQQQQQQQQQQQAAAKHQQQLTAALIQQQNRVLAQQNLEKLSNHL
SPLEKQRVFAQLDPKHFDPMAVAAAAANLQIQGLMQSQAVAAAVAANQQT
PAATTTSAAGGAAAGPQAHHGHHPLPPPSQSPHSSSSSSSHSSLDQITHK
NVADSLRSNLDSIESNKDLLALHNGAWATGDANRMDHLAVGQDKIVRIFA
ELMRNMSRMKTYIRPSMCKPYGKQSESLQKTLMDTIQIVQTLRNCLPAPH
IPVSSWKSESEGNVGSGVSAGVGVGVPAGLNLGAALGLPSGNMHASFLDH
BO18083.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:44:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5466-PA | 594 | CG5466-PA | 1..594 | 1..594 | 3059 | 100 | Plus |
Clk-PH | 895 | CG7391-PH | 568..740 | 215..364 | 177 | 31.8 | Plus |
Clk-PG | 895 | CG7391-PG | 568..740 | 215..364 | 177 | 31.8 | Plus |
Clk-PF | 961 | CG7391-PF | 634..806 | 215..364 | 177 | 31.8 | Plus |
Clk-PA | 1023 | CG7391-PA | 696..868 | 215..364 | 177 | 31.8 | Plus |