Clone BO18083 Report

Search the DGRC for BO18083

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:180
Well:83
Vector:pDNR-Dual
Associated Gene/TranscriptCG5466-RA
Protein status:BO18083.pep: validated full length
Sequenced Size:1816

Clone Sequence Records

BO18083.3prime Sequence

809 bp (793 high quality bases) assembled on 2006-10-13

> BO18083.3prime
ATGGTCTAGAAAGCTTGCGTGCATGTTGCCCGATGGCAGACCCAAGGCGG
CGCCCAGGTTAAGTCCTGCAGGGACACCCACTCCTACTCCCGCGCTCACT
CCTGATCCCACGTTGCCCTCGCTCTCACTTTTCCAGGACGACACGGGTAT
GTGAGGAGCTGGGAGGCAGTTGCGCAGCGTCTGCACGATCTGAATGGTGT
CCATGAGGGTTTTCTGCAGACTCTCACTCTGCTTGCCGTAGGGCTTGCAC
ATCGAGGGACGTATGTAGGTTTTCATCCGCGACATGTTTCGCATCAGCTC
CGCAAAGATGCGCACTATCTTGTCCTGACCCACGGCCAAGTGATCCATTC
GATTGGCATCGCCGGTGGCCCAGGCTCCGTTGTGCAGCGCCAGCAGATCC
TTATTCGATTCTATTGAGTCCAGATTGGAACGCAAGGAGTCGGCGACGTT
CTTGTGGGTAATCTGGTCCAACGAGGAATGAGAGGAAGACGAAGAGGATG
AGTGTGGCGACTGCGATGGCGGTGGCAAGGGATGGTGTCCGTGATGGGCC
TGCGGGCCGGCTGCAGCTCCTCCTGCAGCAGATGTAGTCGTAGCCGCCGG
AGTCTGCTGATTGGCGGCGACGGCGGCAGCCACTGCCTGCGATTGCATCA
GGCCTTGGATTTGAAGATTGGCGGCTGCAGCCGCAACGGCCATGGGATCA
AAGTGCTTTGGATCCAGCTGGGCGAAAACTCGCTGCTTTTCCAGCGGACT
GAGGTGGTTGCTAAGCTTCTCTAAATTTTGCTGGGCGAGGACACGGTTTT
GCTGTTGGA

BO18083.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:51:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG5466-PA 1785 CG5466-RA 992..1782 809..19 3955 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:43:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG5466-RA 2907 CG5466-RA 1200..1990 809..19 3955 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:43:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20619250..20619628 809..431 1895 100 Minus
3R 32079331 3R 20619861..20620082 431..210 1110 100 Minus
3R 32079331 3R 20620162..20620352 209..19 955 100 Minus
Blast to na_te.dros performed on 2015-02-11 15:43:51 has no hits.

BO18083.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:18:02 Download gff for BO18083.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5466-PA 993..1785 18..808 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:15:29 Download gff for BO18083.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5466-RA 1201..1990 19..808 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:41:43 Download gff for BO18083.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5466-RA 1201..1990 19..808 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:41:43 Download gff for BO18083.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 20619251..20619628 431..808 100 -> Minus
3R 20619862..20620082 210..430 100 -> Minus
3R 20620162..20620352 19..209 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:15:29 Download gff for BO18083.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16444973..16445350 431..808 100 -> Minus
arm_3R 16445584..16445804 210..430 100 -> Minus
arm_3R 16445884..16446074 19..209 100   Minus

BO18083.5prime Sequence

864 bp (720 high quality bases) assembled on 2006-10-13

> BO18083.5prime
GAAGTTATCAGTCGACATGAACAATTTGGAGCACTCCAAGCATTTCTATC
CTGATAACTACAAATTGGATCTGTCTGAGACCATGAAGGCGGCTCTGTCC
AAAGGACCCGGTGGTGGTGCCGGTGGCGGGGGCGTGGCAGGCGGAGATAT
GCTGCCGCAGCCAAATGCTGGAATGCCAGGAGTGGGCTATGTTACGGAAA
AGCTGTACATGCTGCTGCAGCTGTATCTGCAGAACAAAGGCTGGAATCCC
AGTGCTGAGCTGCTGCAGTGCTTCAGCGATCTCAAGGACAATGCCATGCT
GCCCAGCGCCGCCTATCTGCAAGTCCTGGCCAACCGCTTAACCCTGGACT
CCCAGGGACGGCTAATACTGCGCGACAATGGAAAGATTGTCTTGCCCTTT
GAGCATTTTGCCAATGCGGTCATGCTAAAGCACATGTCAGGTCCGCACGG
CCTGCACCTTAGTGTCGATGCCACGGTGAGGGCAGTCATTGAGTCGTACA
CCATCGGTCGGGATCAGTTCGGCATGGAGAAAGAGTTCATCATCGAGGTG
GTGCAGTCCTGCCCAAGTCCCGCATGTCGCTACTATAAAAACCACATGGG
AATTTCGCCCATGCCGTTCATGGAGCAGCAGTATCCGGGCGTAAACACTC
CCGAGTTCCTGCAGCGCTTGGCGCATCTGCCGCCTGGGGGAGCAGCCGGA
TCTGGGCCAGGAGGCTCCGCAGCCGGATCCACCTCCAGCGTGGCAAGCAG
CTCGAGTTCGGCGAACGTGGAAATCGATCTGTCCAAGTCGACGGGCGCGA
AGGTGCCCCAGGTGCCGGTGCCGCCGCAGTTGCAGCACCTGACCAAGCAG
CAGCAGAGCACTCT

BO18083.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:51:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG5466-PA 1785 CG5466-RA 1..848 17..864 4240 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:37:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG5466-RA 2907 CG5466-RA 209..1056 17..864 4240 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:37:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20618564..20619106 322..864 2715 100 Plus
3R 32079331 3R 20618214..20618507 28..321 1470 100 Plus
Blast to na_te.dros performed on 2015-02-13 13:37:44 has no hits.

BO18083.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:18:02 Download gff for BO18083.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5466-PA 1..848 17..864 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:46:15 Download gff for BO18083.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5466-RA 200..1056 9..864 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:02:32 Download gff for BO18083.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5466-RA 200..1056 9..864 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:02:32 Download gff for BO18083.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 20618214..20618507 28..321 100 -> Plus
3R 20618564..20619106 322..864 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:46:15 Download gff for BO18083.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16443936..16444229 28..321 100 -> Plus
arm_3R 16444286..16444828 322..864 100   Plus

BO18083.complete Sequence

1816 bp assembled on 2007-03-23

GenBank Submission: FJ634311

> BO18083.complete
GAAGTTATCAGTCGACATGAACAATTTGGAGCACTCCAAGCATTTCTATC
CTGATAACTACAAATTGGATCTGTCTGAGACCATGAAGGCGGCTCTGTCC
AAAGGACCCGGTGGTGGTGCCGGTGGCGGGGGCGTGGCAGGCGGAGATAT
GCTGCCGCAGCCAAATGCTGGAATGCCAGGAGTGGGCTATGTTACGGAAA
AGCTGTACATGCTGCTGCAGCTGTATCTGCAGAACAAAGGCTGGAATCCC
AGTGCTGAGCTGCTGCAGTGCTTCAGCGATCTCAAGGACAATGCCATGCT
GCCCAGCGCCGCCTATCTGCAAGTCCTGGCCAACCGCTTAACCCTGGACT
CCCAGGGACGGCTAATACTGCGCGACAATGGAAAGATTGTCTTGCCCTTT
GAGCATTTTGCCAATGCGGTCATGCTAAAGCACATGTCAGGTCCGCACGG
CCTGCACCTTAGTGTCGATGCCACGGTGAGGGCAGTCATTGAGTCGTACA
CCATCGGTCGGGATCAGTTCGGCATGGAGAAAGAGTTCATCATCGAGGTG
GTGCAGTCCTGCCCAAGTCCCGCATGTCGCTACTATAAAAACCACATGGG
AATTTCGCCCATGCCGTTCATGGAGCAGCAGTATCCGGGCGTAAACACTC
CCGAGTTCCTGCAGCGCTTGGCGCATCTGCCGCCTGGGGGAGCAGCCGGA
TCTGGGCCAGGAGGCTCCGCAGCCGGATCCACCTCCAGCGTGGCAAGCAG
CTCGAGTTCGGCGAACGTGGAAATCGATCTGTCCAAGTCGACGGGCGCGA
AGGTGCCCCAGGTGCCGGTGCCGCCGCAGTTGCAGCACCTGACCAAGCAG
CAGCAGAGCACTCTCCAGACGCAGCTCTCCCAGATCAGTGCTGCCGCCGC
TCATCATCAACAACAACAACAGCAGCAACAACAGCAACAGCAGCAGCAGC
AGCAACAACAACAGCAAGCAGCAGCCAAGCACCAGCAGCAATTGACTGCT
GCCCTCATCCAACAGCAAAACCGTGTCCTCGCCCAGCAAAATTTAGAGAA
GCTTAGCAACCACCTCAGTCCGCTGGAAAAGCAGCGAGTTTTCGCCCAGC
TGGATCCAAAGCACTTTGATCCCATGGCCGTTGCGGCTGCAGCCGCCAAT
CTTCAAATCCAAGGCCTGATGCAATCGCAGGCAGTGGCTGCCGCCGTCGC
CGCCAATCAGCAGACTCCGGCGGCTACGACTACATCTGCTGCAGGAGGAG
CTGCAGCCGGCCCGCAGGCCCATCACGGACACCATCCCTTGCCACCGCCA
TCGCAGTCGCCACACTCATCCTCTTCGTCTTCCTCTCATTCCTCGTTGGA
CCAGATTACCCACAAGAACGTCGCCGACTCCTTGCGTTCCAATCTGGACT
CAATAGAATCGAATAAGGATCTGCTGGCGCTGCACAACGGAGCCTGGGCC
ACCGGCGATGCCAATCGAATGGATCACTTGGCCGTGGGTCAGGACAAGAT
AGTGCGCATCTTTGCGGAGCTGATGCGAAACATGTCGCGGATGAAAACCT
ACATACGTCCCTCGATGTGCAAGCCCTACGGCAAGCAGAGTGAGAGTCTG
CAGAAAACCCTCATGGACACCATTCAGATCGTGCAGACGCTGCGCAACTG
CCTCCCAGCTCCTCACATACCCGTGTCGTCCTGGAAAAGTGAGAGCGAGG
GCAACGTGGGATCAGGAGTGAGCGCGGGAGTAGGAGTGGGTGTCCCTGCA
GGACTTAACCTGGGCGCCGCCTTGGGTCTGCCATCGGGCAACATGCACGC
AAGCTTTCTAGACCAT

BO18083.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:07:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG5466-RA 1785 CG5466-PA 1..1782 17..1798 8910 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:07:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG5466-RA 2907 CG5466-RA 209..1990 17..1798 8910 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:07:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20618564..20619628 322..1386 5325 100 Plus
3R 32079331 3R 20618214..20618507 28..321 1470 100 Plus
3R 32079331 3R 20619861..20620082 1386..1607 1110 100 Plus
3R 32079331 3R 20620162..20620352 1608..1798 955 100 Plus
Blast to na_te.dros performed 2014-11-26 16:07:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2346..2503 833..990 274 69.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2823..2975 827..994 217 66.1 Plus
Porto1 4682 Porto1 DOC5 4682bp 489..591 854..966 152 67.3 Plus

BO18083.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:09:31 Download gff for BO18083.complete
Subject Subject Range Query Range Percent Splice Strand
CG5466-RA 1..1785 17..1799 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:26:39 Download gff for BO18083.complete
Subject Subject Range Query Range Percent Splice Strand
CG5466-RA 173..1963 9..1798 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:53:01 Download gff for BO18083.complete
Subject Subject Range Query Range Percent Splice Strand
CG5466-RA 209..1990 17..1800 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:09:31 Download gff for BO18083.complete
Subject Subject Range Query Range Percent Splice Strand
CG5466-RA 173..1963 9..1798 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:11:54 Download gff for BO18083.complete
Subject Subject Range Query Range Percent Splice Strand
CG5466-RA 209..1990 17..1800 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:11:54 Download gff for BO18083.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20618214..20618507 28..321 100 -> Plus
3R 20618564..20619628 322..1386 100 -> Plus
3R 20619862..20620082 1387..1607 100 -> Plus
3R 20620162..20620352 1608..1800 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:53:01 Download gff for BO18083.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16443936..16444229 28..321 100 -> Plus
arm_3R 16444286..16445350 322..1386 100 -> Plus
arm_3R 16445584..16445804 1387..1607 100 -> Plus
arm_3R 16445884..16446074 1608..1800 98   Plus

BO18083.pep Sequence

Translation from 16 to 1816

> BO18083.pep
MNNLEHSKHFYPDNYKLDLSETMKAALSKGPGGGAGGGGVAGGDMLPQPN
AGMPGVGYVTEKLYMLLQLYLQNKGWNPSAELLQCFSDLKDNAMLPSAAY
LQVLANRLTLDSQGRLILRDNGKIVLPFEHFANAVMLKHMSGPHGLHLSV
DATVRAVIESYTIGRDQFGMEKEFIIEVVQSCPSPACRYYKNHMGISPMP
FMEQQYPGVNTPEFLQRLAHLPPGGAAGSGPGGSAAGSTSSVASSSSSAN
VEIDLSKSTGAKVPQVPVPPQLQHLTKQQQSTLQTQLSQISAAAAHHQQQ
QQQQQQQQQQQQQQQQQAAAKHQQQLTAALIQQQNRVLAQQNLEKLSNHL
SPLEKQRVFAQLDPKHFDPMAVAAAAANLQIQGLMQSQAVAAAVAANQQT
PAATTTSAAGGAAAGPQAHHGHHPLPPPSQSPHSSSSSSSHSSLDQITHK
NVADSLRSNLDSIESNKDLLALHNGAWATGDANRMDHLAVGQDKIVRIFA
ELMRNMSRMKTYIRPSMCKPYGKQSESLQKTLMDTIQIVQTLRNCLPAPH
IPVSSWKSESEGNVGSGVSAGVGVGVPAGLNLGAALGLPSGNMHASFLDH

BO18083.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:44:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG5466-PA 594 CG5466-PA 1..594 1..594 3059 100 Plus
Clk-PH 895 CG7391-PH 568..740 215..364 177 31.8 Plus
Clk-PG 895 CG7391-PG 568..740 215..364 177 31.8 Plus
Clk-PF 961 CG7391-PF 634..806 215..364 177 31.8 Plus
Clk-PA 1023 CG7391-PA 696..868 215..364 177 31.8 Plus