Clone BO18085 Report

Search the DGRC for BO18085

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:180
Well:85
Vector:pDNR-Dual
Associated Gene/Transcriptpan-RI
Protein status:BO18085.pep: validated not full length
Sequenced Size:1264

Clone Sequence Records

BO18085.3prime Sequence

828 bp (727 high quality bases) assembled on 2006-10-13

> BO18085.3prime
ATGGTCTAGAAAGCTTGCATTCTTGCGTGAATCTTGTAAATCCATTTGCA
ATAAAATGTAAAGCATTGTAAACAAAAATAGGGGTAAAACATACCTGCAC
GGTTTGCACCACTGACTCTGTTGATCTAGTCCGAAACGGGCGCGGCATTT
TTTCATATTATTGCCTCCATCATTGGTATCTTGCTTCCGCTTCCGTTTTT
TGCCGCGAGAGGCATTTGTACGAGAGCTCCAATCAGGATACATTTGCATG
TGCAGTTGTCGCTCCCTTCGCGCCAACTCGTAATACTTCGCCTGCTCCTC
ACGCCCCAAGGCATGCCACCGTCTTCCTAAAATCTGATTAATCGCAGCCG
ATTCCTTCAGAGTGCATTCAGCAACAACCTTAGCACGCATTTCCTTCATA
TAGAGCATGAACGCATTTAGTGGCTTCTTAATATGGGGTTTTTTTTTATC
ATTTGTTGTCTCCTTGGATTCATTTGATTGCGCATTTGATGTGTGCTTTG
CTTCCAGGTTCCTTGGATATCTATTATTCGTTGTTGGGTCCTGAACACCG
CATTCTTGTTTAGAGCTAACCCCCACAATAGCAGAATGAGCATTTATAAC
GTGGTGCGATGTGGCATGTACTGAAGGTAAAAGGCTAGGTGAAAAACGGA
ATGGAAAATCACTTGCAAGTGTAGTATTTATTGGTAGTGAGGAGGGATAA
GGAGTTCTAAAACTAGATGCAAAATAAACAGAAGGAGTGTGCCATGATGC
CACTTGAAACATAATCTGAACTTAGCATTGGTAAAGGAAATTGACCTCCC
GCAAATGGGTATAGCGCTGGTCGAGTTA

BO18085.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:18:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG17964-PI 1233 pan-RI 486..1230 763..19 3675 99.7 Minus
CG17964-PH 2244 pan-RH 486..1155 763..94 3300 99.7 Minus
CG17964-PE 2256 pan-RE 486..935 763..314 2200 99.5 Minus
CG17964-PD 2256 pan-RD 486..935 763..314 2200 99.5 Minus
CG17964-PB 2256 pan-RB 486..935 763..314 2200 99.5 Minus
CG17964-PC 2256 pan-RC 486..935 763..314 2200 99.5 Minus
CG17964-PF 2256 pan-RF 486..935 763..314 2200 99.5 Minus
CG17964-PA 2256 pan-RA 486..935 763..314 2200 99.5 Minus
CG17964-PG 2256 pan-RG 486..935 763..314 2200 99.5 Minus
CG17964-PE 2256 pan-RE 1093..1167 168..94 375 100 Minus
CG17964-PD 2256 pan-RD 1093..1167 168..94 375 100 Minus
CG17964-PB 2256 pan-RB 1093..1167 168..94 375 100 Minus
CG17964-PC 2256 pan-RC 1093..1167 168..94 375 100 Minus
CG17964-PF 2256 pan-RF 1093..1167 168..94 375 100 Minus
CG17964-PA 2256 pan-RA 1093..1167 168..94 375 100 Minus
CG17964-PG 2256 pan-RG 1093..1167 168..94 375 100 Minus
CG17964-PI 1233 pan-RI 422..486 828..764 250 95.3 Minus
CG17964-PH 2244 pan-RH 422..486 828..764 250 95.3 Minus
CG17964-PE 2256 pan-RE 422..486 828..764 250 95.3 Minus
CG17964-PD 2256 pan-RD 422..486 828..764 250 95.3 Minus
CG17964-PB 2256 pan-RB 422..486 828..764 250 95.3 Minus
CG17964-PC 2256 pan-RC 422..486 828..764 250 95.3 Minus
CG17964-PF 2256 pan-RF 422..486 828..764 250 95.3 Minus
CG17964-PA 2256 pan-RA 422..486 828..764 250 95.3 Minus
CG17964-PG 2256 pan-RG 422..486 828..764 250 95.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:48:19
Subject Length Description Subject Range Query Range Score Percent Strand
pan-RI 3795 CG34403-RI 1119..1927 828..19 3950 99.3 Minus
pan-RH 4219 CG34403-RH 1119..1852 828..94 3575 99.2 Minus
pan-RQ 4954 CG34403-RQ 1119..1851 828..95 3570 99.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:48:10
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 94421..94615 513..319 975 100 Minus
4 1348131 4 97821..97976 319..164 780 100 Minus
4 1348131 4 87015..87167 663..511 765 100 Minus
4 1348131 4 99404..99551 166..19 740 100 Minus
4 1348131 4 85852..85933 743..662 395 98.8 Minus
4 1348131 4 85715..85800 828..742 325 94.3 Minus
Blast to na_te.dros performed on 2015-02-08 11:48:14 has no hits.

BO18085.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:18:03 Download gff for BO18085.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17964-PI 423..1233 15..827 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:37:03 Download gff for BO18085.3prime
Subject Subject Range Query Range Percent Splice Strand
pan-RI 1120..1932 11..827 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:42:19 Download gff for BO18085.3prime
Subject Subject Range Query Range Percent Splice Strand
pan-RI 1120..1932 11..827 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:42:19 Download gff for BO18085.3prime
Subject Subject Range Query Range Percent Splice Strand
4 85716..85799 743..827 94 -> Minus
4 85853..85933 662..742 98 -> Minus
4 87017..87166 512..661 100 -> Minus
4 94423..94615 319..511 100 -> Minus
4 97822..97975 165..318 100 -> Minus
4 99406..99556 11..164 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:37:03 Download gff for BO18085.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_4 107643..107792 512..661 100 -> Minus
arm_4 106342..106425 743..827 94 -> Minus
arm_4 106479..106559 662..742 98 -> Minus
arm_4 115049..115241 319..511 100 -> Minus
arm_4 118448..118601 165..318 100 -> Minus
arm_4 120032..120182 11..164 97   Minus

BO18085.5prime Sequence

800 bp (761 high quality bases) assembled on 2006-10-13

> BO18085.5prime
GAAGTTATCAGTCGACATGCCTCATACACACAGCAGGCATGGATCATCAG
GAGATGATTTATGCAGTACTGATGAAGTGAAGATTTTTAAAGACGAAGGA
GATCGCGAGGATGAAAAAATATCATCTGAGAACTTATTAGTTGAAGAAAA
GTCTAGCTTAATAGATTTAACTGAAAGTGAGGAAAAGGGTCACAAAATTT
CAAGGCCGGACCACAGCCCTGTTTTTAATAAGCTGGACACCCACGCCCCT
AGCTTTAACATGGGTTACTTAGTTTCTCCTTATTCGTATGCCAATGGTTC
TCCAAGTGGCTTACCGGTAACTATGGCCAACAAAATTGGACTGCCTCCGT
TTTTTTGTCACAATGCTGATCCGTTATCAACACCACCACCAGCGCATTGC
GGAATTCCTCCATATCAACTGGATCCTAAGATGGGCTTAACTCGACCAGC
GCTATACCCATTTGCGGGAGGTCAATATCCTTACCCAATGCTAAGTTCAG
ATATGTCTCAAGTGGCATCATGGCACACTCCTTCTGTTTATTCTGCATCT
AGTTTTAGAACTCCTTATCCCTCCTCACTACCAATAAATACTACACTTGC
AAGTGATTTTCCATTCCGTTTTTCACCTAGCCTTTTACCTTCAGTACATG
CCACATCGCACCACGTTATAAATGCTCATTCTGCTATTGTGGGGGTTAGC
TCTAAACAAGAATGCGGTGTTCAGGACCCAACAACGAATAATAGATATCC
AAGGAACCTGGAAGCAAAGCACACATCAAATGCGCAATCAAATGAATCCA

BO18085.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG17964-PH 2244 pan-RH 1..784 17..800 3920 100 Plus
CG17964-PE 2256 pan-RE 1..784 17..800 3920 100 Plus
CG17964-PD 2256 pan-RD 1..784 17..800 3920 100 Plus
CG17964-PB 2256 pan-RB 1..784 17..800 3920 100 Plus
CG17964-PC 2256 pan-RC 1..784 17..800 3920 100 Plus
CG17964-PF 2256 pan-RF 1..784 17..800 3920 100 Plus
CG17964-PA 2256 pan-RA 1..784 17..800 3920 100 Plus
CG17964-PG 2256 pan-RG 1..784 17..800 3920 100 Plus
CG17964-PI 1233 pan-RI 1..784 17..800 3920 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:07:31
Subject Length Description Subject Range Query Range Score Percent Strand
pan-RS 3101 CG34403-RS 697..1481 16..800 3925 100 Plus
pan-RR 8472 CG34403-RR 438..1222 16..800 3925 100 Plus
pan-RI 3795 CG34403-RI 697..1481 16..800 3925 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:07:29
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 72429..72595 16..182 835 100 Plus
4 1348131 4 87015..87167 602..754 765 100 Plus
4 1348131 4 82637..82747 325..435 555 100 Plus
4 1348131 4 75068..75166 228..326 495 100 Plus
4 1348131 4 85711..85800 434..523 450 100 Plus
4 1348131 4 85852..85933 522..603 410 100 Plus
4 1348131 4 72815..72867 180..232 250 98.1 Plus
4 1348131 4 94421..94469 752..800 245 100 Plus
Blast to na_te.dros performed on 2015-02-11 09:07:30 has no hits.

BO18085.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:18:03 Download gff for BO18085.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17964-PI 1..783 17..799 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 17:00:30 Download gff for BO18085.5prime
Subject Subject Range Query Range Percent Splice Strand
pan-RI 697..1480 16..799 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:53:38 Download gff for BO18085.5prime
Subject Subject Range Query Range Percent Splice Strand
pan-RI 697..1480 16..799 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 10:53:38 Download gff for BO18085.5prime
Subject Subject Range Query Range Percent Splice Strand
4 72429..72594 16..181 100 -> Plus
4 72817..72862 182..227 100 -> Plus
4 75068..75165 228..325 100 -> Plus
4 82638..82746 326..434 100 -> Plus
4 85712..85799 435..522 100 -> Plus
4 85853..85933 523..603 100 -> Plus
4 87017..87166 604..753 100 -> Plus
4 94423..94468 754..799 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 17:00:30 Download gff for BO18085.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_4 93055..93220 16..181 100 -> Plus
arm_4 93443..93488 182..227 100 -> Plus
arm_4 95694..95791 228..325 100 -> Plus
arm_4 103264..103372 326..434 100 -> Plus
arm_4 106338..106425 435..522 100 -> Plus
arm_4 106479..106559 523..603 100 -> Plus
arm_4 107643..107792 604..753 100 -> Plus
arm_4 115049..115094 754..799 100   Plus

BO18085.complete Sequence

1264 bp assembled on 2006-10-11

GenBank Submission: FJ634312

> BO18085.complete
GAAGTTATCAGTCGACATGCCTCATACACACAGCAGGCATGGATCATCAG
GAGATGATTTATGCAGTACTGATGAAGTGAAGATTTTTAAAGACGAAGGA
GATCGCGAGGATGAAAAAATATCATCTGAGAACTTATTAGTTGAAGAAAA
GTCTAGCTTAATAGATTTAACTGAAAGTGAGGAAAAGGGTCACAAAATTT
CAAGGCCGGACCACAGCCCTGTTTTTAATAAGCTGGACACCCACGCCCCT
AGCTTTAACATGGGTTACTTAGTTTCTCCTTATTCGTATGCCAATGGTTC
TCCAAGTGGCTTACCGGTAACTATGGCCAACAAAATTGGACTGCCTCCGT
TTTTTTGTCACAATGCTGATCCGTTATCAACACCACCACCAGCGCATTGC
GGAATTCCTCCATATCAACTGGATCCTAAGATGGGCTTAACTCGACCAGC
GCTATACCCATTTGCGGGAGGTCAATATCCTTACCCAATGCTAAGTTCAG
ATATGTCTCAAGTGGCATCATGGCACACTCCTTCTGTTTATTCTGCATCT
AGTTTTAGAACTCCTTATCCCTCCTCACTACCAATAAATACTACACTTGC
AAGTGATTTTCCATTCCGTTTTTCACCTAGCCTTTTACCTTCAGTACATG
CCACATCGCACCACGTTATAAATGCTCATTCTGCTATTGTGGGGGTTAGC
TCTAAACAAGAATGCGGTGTTCAGGACCCAACAACGAATAATAGATATCC
AAGGAACCTGGAAGCAAAGCACACATCAAATGCGCAATCAAATGAATCCA
AGGAGACAACAAATGATAAAAAAAAACCCCATATTAAGAAGCCACTAAAT
GCGTTCATGCTCTATATGAAGGAAATGCGTGCTAAGGTTGTTGCTGAATG
CACTCTGAAGGAATCGGCTGCGATTAATCAGATTTTAGGAAGACGGTGGC
ATGCCTTGGGGCGTGAGGAGCAGGCGAAGTATTACGAGTTGGCGCGAAGG
GAGCGACAACTGCACATGCAAATGTATCCTGATTGGAGCTCTCGTACAAA
TGCCTCTCGCGGCAAAAAACGGAAGCGGAAGCAAGATACCAATGATGGAG
GCAATAATATGAAAAAATGCCGCGCCCGTTTCGGACTAGATCAACAGAGT
CAGTGGTGCAAACCGTGCAGGTATGTTTTACCCCTATTTTTGTTTACAAT
GCTTTACATTTTATTGCAAATGGATTTACAAGATTCACGCAAGAATGCAA
GCTTTCTAGACCAT

BO18085.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:18:07
Subject Length Description Subject Range Query Range Score Percent Strand
pan-RI 1233 CG34403-PI 1..1230 17..1246 6150 100 Plus
pan-RH 2244 CG34403-PH 1..1155 17..1171 5775 100 Plus
pan-RQ 1485 CG34403-PQ 1..1154 17..1170 5770 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:18:08
Subject Length Description Subject Range Query Range Score Percent Strand
pan-RI 3795 CG34403-RI 697..1927 16..1246 6155 100 Plus
pan-RH 4219 CG34403-RH 697..1852 16..1171 5780 100 Plus
pan-RQ 4954 CG34403-RQ 697..1851 16..1170 5775 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:18:05
Subject Length Description Subject Range Query Range Score Percent Strand
4 1348131 4 94421..94615 752..946 975 100 Plus
4 1348131 4 72429..72595 16..182 835 100 Plus
4 1348131 4 97821..97976 946..1101 780 100 Plus
4 1348131 4 87015..87167 602..754 765 100 Plus
4 1348131 4 99404..99551 1099..1246 740 100 Plus
4 1348131 4 82637..82747 325..435 555 100 Plus
4 1348131 4 75068..75166 228..326 495 100 Plus
4 1348131 4 85711..85800 434..523 450 100 Plus
4 1348131 4 85852..85933 522..603 410 100 Plus
4 1348131 4 72815..72867 180..232 250 98.1 Plus
Blast to na_te.dros performed on 2014-11-28 08:18:06 has no hits.

BO18085.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:46 Download gff for BO18085.complete
Subject Subject Range Query Range Percent Splice Strand
pan-RI 1..1233 17..1250 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:50:30 Download gff for BO18085.complete
Subject Subject Range Query Range Percent Splice Strand
pan-RI 421..1650 17..1248 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:58 Download gff for BO18085.complete
Subject Subject Range Query Range Percent Splice Strand
pan-RI 698..1927 17..1248 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:46 Download gff for BO18085.complete
Subject Subject Range Query Range Percent Splice Strand
pan-RI 420..1655 16..1254 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:14:58 Download gff for BO18085.complete
Subject Subject Range Query Range Percent Splice Strand
pan-RI 698..1927 17..1248 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:14:58 Download gff for BO18085.complete
Subject Subject Range Query Range Percent Splice Strand
4 85853..85933 523..603 100 -> Plus
4 87017..87166 604..753 100 -> Plus
4 94423..94615 754..946 100 -> Plus
4 97822..97975 947..1100 100 -> Plus
4 99406..99551 1101..1248 98   Plus
4 72430..72594 17..181 100 -> Plus
4 72817..72862 182..227 100 -> Plus
4 75068..75165 228..325 100 -> Plus
4 82638..82746 326..434 100 -> Plus
4 85712..85799 435..522 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:58 Download gff for BO18085.complete
Subject Subject Range Query Range Percent Splice Strand
arm_4 115049..115241 754..946 100 -> Plus
arm_4 118448..118601 947..1100 100 -> Plus
arm_4 120032..120177 1101..1248 98   Plus
arm_4 93056..93220 17..181 100 -> Plus
arm_4 93443..93488 182..227 100 -> Plus
arm_4 95694..95791 228..325 100 -> Plus
arm_4 103264..103372 326..434 100 -> Plus
arm_4 106338..106425 435..522 100 -> Plus
arm_4 106479..106559 523..603 100 -> Plus
arm_4 107643..107792 604..753 100 -> Plus

BO18085.pep Sequence

Translation from 16 to 1264

> BO18085.pep
MPHTHSRHGSSGDDLCSTDEVKIFKDEGDREDEKISSENLLVEEKSSLID
LTESEEKGHKISRPDHSPVFNKLDTHAPSFNMGYLVSPYSYANGSPSGLP
VTMANKIGLPPFFCHNADPLSTPPPAHCGIPPYQLDPKMGLTRPALYPFA
GGQYPYPMLSSDMSQVASWHTPSVYSASSFRTPYPSSLPINTTLASDFPF
RFSPSLLPSVHATSHHVINAHSAIVGVSSKQECGVQDPTTNNRYPRNLEA
KHTSNAQSNESKETTNDKKKPHIKKPLNAFMLYMKEMRAKVVAECTLKES
AAINQILGRRWHALGREEQAKYYELARRERQLHMQMYPDWSSRTNASRGK
KRKRKQDTNDGGNNMKKCRARFGLDQQSQWCKPCRYVLPLFLFTMLYILL
QMDLQDSRKNASFLDH

BO18085.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:18:53
Subject Length Description Subject Range Query Range Score Percent Strand
pan-PI 410 CG34403-PI 1..410 1..410 2202 100 Plus
pan-PH 747 CG34403-PH 1..385 1..385 2076 100 Plus
pan-PQ 494 CG34403-PQ 1..384 1..384 2071 100 Plus
pan-PS 733 CG34403-PS 1..389 1..385 1964 94.3 Plus
pan-PR 751 CG34403-PR 1..389 1..385 1964 94.3 Plus