Clone Sequence Records
BO18087.3prime Sequence
839 bp (762 high quality bases) assembled on 2006-10-13
> BO18087.3prime
ATGGTCTAGAAAGCTTGCGACATATAACACAAACATGGCTGCAATGGCCG
CCAAAAAGGACAGAAACGTCGAGGCGTAGAGCACGGCACAAGTTGTGTCC
ATCCAGGATACCAAAGGACCCACGGAAAGGGATACAATCAACTGGGCAAT
AAAAACCATACTGCTGATAATGGCCACATCAGTGCCCAATCCACGAGCCT
GTTTCAGTGGTACTATCTCTCCATTCTTAATAGAGAAACAATTTTTGGCA
TGATATCTAGCCACCAATATGAAAGGCACCGTGAAAATGGTTCCATACAG
AATACCAGCTGACGTGCTGAATACCAAGACTCCCCACTTAGTTGGCCACA
AGCCCAGGACAAGCATTCCGATACCATAGTAAATCATTCCACTAATGTAA
ACCGCCTTGGTTCCGAACCACTTCATTAACTTGGTCACCGACAGCGAGTA
AATGGAGCAGGAAAATGCGTATATGGCCATTCCCCAGCAACCAAATCGCA
CTCCAGCCTCGTAGTTGAGAGCAGCTTCCGAGTTGGGAGCAGCCGTGGGA
TCACCGTGGAAAACTGCCTCACCCACAAAGTCCGTGAAGTACAGGCAATA
GGTGACGTGGCCCATCCAGCAGAAGAGATTGGTGAGGGCCAGCATGCGCA
TCGAGTAGGGCATGATGAAGATGCTCTTGAGATAGGCCTTAAGGGAGACG
GGAGCATCGTAATCCGACTGGGTCTCCAAATCCTGGGATTTCCCTTGCTT
CTCCACAGCGGGTGAATAGCCATTCTGATAGCTGCCTTGCAGTGCCTCCA
ATCGCTTGGGATCATCACTGGCCCTCTGAAGCTCCGCTG
BO18087.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:52:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4484-PA | 1800 | CG4484-RA | 981..1797 | 835..19 | 4060 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:49:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Slc45-1-RD | 2378 | CG4484-RD | 1308..2124 | 835..19 | 4070 | 99.9 | Minus |
| Slc45-1-RC | 2161 | CG4484-RC | 1091..1907 | 835..19 | 4070 | 99.9 | Minus |
| Slc45-1-RB | 3007 | CG4484-RB | 1937..2753 | 835..19 | 4070 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:49:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9204098..9204520 | 413..835 | 2100 | 99.8 | Plus |
| 3L | 28110227 | 3L | 9203319..9203537 | 19..237 | 1095 | 100 | Plus |
| 3L | 28110227 | 3L | 9203598..9203773 | 238..413 | 880 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:49:36 has no hits.
BO18087.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:18:05 Download gff for
BO18087.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4484-PA | 976..1800 | 18..839 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:42:50 Download gff for
BO18087.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slc45-1-RB | 1932..2753 | 19..839 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:53:02 Download gff for
BO18087.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slc45-1-RB | 1932..2753 | 19..839 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:53:02 Download gff for
BO18087.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9203319..9203537 | 19..237 | 100 | <- | Plus |
| 3L | 9203598..9203772 | 238..412 | 100 | <- | Plus |
| 3L | 9204098..9204525 | 413..839 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:42:50 Download gff for
BO18087.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9196419..9196637 | 19..237 | 100 | <- | Plus |
| arm_3L | 9196698..9196872 | 238..412 | 100 | <- | Plus |
| arm_3L | 9197198..9197625 | 413..839 | 99 | | Plus |
BO18087.5prime Sequence
752 bp (750 high quality bases) assembled on 2006-10-13
> BO18087.5prime
GAAGTTATCAGTCGACATGGTTGGAGTTACTGCCGACGCCTCGCAGGCGA
ATCAGCTGTCCTCGGTCCGGAACCCGATGATCAAGTACATGCTGAAAACA
CGGGAGAATCATGCTCGGGAACAGGATCGCGACTACTCGCATGTCTTCCG
CCGGAAGACGCGGTTCGAGATGTTTCGATTGTCCGCCATCGCCATGGCCA
TTGAATTTGCCTATGCGGCGGAGACGAGTTTCGTCTCTCCGATTCTCCTA
CAGATCGGTGTGGATCACAAACACATGTCCATGACCTGGGGACTGTCGCC
ACTGATTGGATTCTTTATGTCCCCGCTGCTGGGAAGTATTAGCGATCGCT
GCAAGCTTCGTTGGGGTCGCCGACGTCCAATTATCTCGATTCTATCATTT
GGCATAATGTGCGGTTTGATTCTGGTGCCATATGGCAAGGATCTGGGTCT
GCTGCTTGGCGATGCCGGATATACTTATGCAGAGTCAGCCTTGAATTTCA
CATCTTCGTCGGGGGGATCTGTGGCTGCTTTGGTTTCGGGTGAAGCGACG
ACAGGACCTTCTGCATCCGACTATAAGTTCGCCGTGATCCTTACGATTTT
GGGCATGGTCCTATTGGATTTCGATGCGGATACCTGCCAGACACCGGCTC
GCACTTATTTACTGGATATGTGTGTGCCAGAGGAGCAGCCGAAAGCCATG
ACCATGTTTGCGCTCTTCGCGGGATTCGGCGGCACGATTGGATATGCCAT
TG
BO18087.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:52:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4484-PA | 1800 | CG4484-RA | 1..736 | 17..752 | 3680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:44:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Slc45-1-RD | 2378 | CG4484-RD | 328..1063 | 17..752 | 3680 | 100 | Plus |
| Slc45-1-RC | 2161 | CG4484-RC | 111..846 | 17..752 | 3680 | 100 | Plus |
| Slc45-1-RB | 3007 | CG4484-RB | 957..1692 | 17..752 | 3680 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:44:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9204765..9205500 | 752..17 | 3680 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:44:10 has no hits.
BO18087.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:18:06 Download gff for
BO18087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4484-PA | 1..736 | 17..752 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:15:31 Download gff for
BO18087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slc45-1-RB | 952..1692 | 12..752 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:41:46 Download gff for
BO18087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slc45-1-RB | 952..1692 | 12..752 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:41:46 Download gff for
BO18087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9204765..9205505 | 12..752 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:15:31 Download gff for
BO18087.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9197865..9198605 | 12..752 | 99 | | Minus |
BO18087.complete Sequence
1831 bp assembled on 2007-03-23
GenBank Submission: FJ634313
> BO18087.complete
GAAGTTATCAGTCGACATGGTTGGAGTTACTGCCGACGCCTCGCAGGCGA
ATCAGCTGTCCTCGGTCCGGAACCCGATGATCAAGTACATGCTGAAAACA
CGGGAGAATCATGCTCGGGAACAGGATCGCGACTACTCGCATGTCTTCCG
CCGGAAGACGCGGTTCGAGATGTTTCGATTGTCCGCCATCGCCATGGCCA
TTGAATTTGCCTATGCGGCGGAGACGAGTTTCGTCTCTCCGATTCTCCTA
CAGATCGGTGTGGATCACAAACACATGTCCATGACCTGGGGACTGTCGCC
ACTGATTGGATTCTTTATGTCCCCGCTGCTGGGAAGTATTAGCGATCGCT
GCAAGCTTCGTTGGGGTCGCCGACGTCCAATTATCTCGATTCTATCATTT
GGCATAATGTGCGGTTTGATTCTGGTGCCATATGGCAAGGATCTGGGTCT
GCTGCTTGGCGATGCCGGATATACTTATGCAGAGTCAGCCTTGAATTTCA
CATCTTCGTCGGGGGGATCTGTGGCTGCTTTGGTTTCGGGTGAAGCGACG
ACAGGACCTTCTGCATCCGACTATAAGTTCGCCGTGATCCTTACGATTTT
GGGCATGGTCCTATTGGATTTCGATGCGGATACCTGCCAGACACCGGCTC
GCACTTATTTACTGGATATGTGTGTGCCAGAGGAGCAGCCGAAAGCCATG
ACCATGTTTGCGCTCTTCGCGGGATTCGGCGGCACGATTGGATATGCCAT
TGGAGGAGTGGATTGGGAGACAACGCATATTGGCAGCTTCATGGGTGGCA
ATATACCCACTGTATTCACCCTGGTCACCATCATATTCGCGGTGTGCTAT
CTTATCACGGTGACCACATTCCGTGAAATTCCATTGCCCTTGATCGAGCA
GGATGAGCTGCTGAGACCGCTGTCCGAACAGGCCATCAAGAAGGAGTTGA
AAAAGAAGAACAATACCATTTACTATATCCAGGAGACCACACAGCTGGAG
CTTCAGATGGCCAGTGATGATCCCAAGCGATTGGAGGCACTGCAAGGCAG
CTATCAGAATGGCTATTCACCCGCTGTGGAGAAGCAAGGGAAATCCCAGG
ATTTGGAGACCCAGTCGGATTACGATGCTCCCGTCTCCCTTAAGGCCTAT
CTCAAGAGCATCTTCATCATGCCCTACTCGATGCGCATGCTGGCCCTCAC
CAATCTCTTCTGCTGGATGGGCCACGTCACCTATTGCCTGTACTTCACGG
ACTTTGTGGGTGAGGCAGTTTTCCACGGTGATCCCACGGCTGCTCCCAAC
TCGGAAGCTGCTCTCAACTACGAGGCTGGAGTGCGATTTGGTTGCTGGGG
AATGGCCATATACGCATTTTCCTGCTCCATTTACTCGCTGTCGGTGACCA
AGTTAATGAAGTGGTTCGGAACCAAGGCGGTTTACATTAGTGGAATGATT
TACTATGGTATCGGAATGCTTGTCCTGGGCTTGTGGCCAACTAAGTGGGG
AGTCTTGGTATTCAGCACGTCAGCTGGTATTCTGTATGGAACCATTTTCA
CGGTGCCTTTCATATTGGTGGCTAGATATCATGCCAAAAATTGTTTCTCT
ATTAAGAATGGAGAGATAGTACCACTGAAACAGGCTCGTGGATTGGGCAC
TGATGTGGCCATTATCAGCAGTATGGTTTTTATTGCCCAGTTGATTGTAT
CCCTTTCCGTGGGTCCTTTGGTATCCTGGATGGACACAACTTGTGCCGTG
CTCTACGCCTCGACGTTTCTGTCCTTTTTGGCGGCCATTGCAGCCATGTT
TGTGTTATATGTCGCAAGCTTTCTAGACCAT
BO18087.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:27:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Slc45-1-RD | 1800 | CG4484-PD | 1..1797 | 17..1813 | 8985 | 100 | Plus |
| Slc45-1-RC | 1800 | CG4484-PC | 1..1797 | 17..1813 | 8985 | 100 | Plus |
| Slc45-1-RB | 1800 | CG4484-PB | 1..1797 | 17..1813 | 8985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:27:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Slc45-1-RD | 2378 | CG4484-RD | 328..2124 | 17..1813 | 8985 | 100 | Plus |
| Slc45-1-RC | 2161 | CG4484-RC | 111..1907 | 17..1813 | 8985 | 100 | Plus |
| Slc45-1-RB | 3007 | CG4484-RB | 957..2753 | 17..1813 | 8985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:27:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9204098..9205500 | 1419..17 | 7015 | 100 | Minus |
| 3L | 28110227 | 3L | 9203319..9203537 | 1813..1595 | 1095 | 100 | Minus |
| 3L | 28110227 | 3L | 9203598..9203773 | 1594..1419 | 880 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:27:06 has no hits.
BO18087.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:09:32 Download gff for
BO18087.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4484-RA | 1..1800 | 17..1814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:26:41 Download gff for
BO18087.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4484-RA | 1..1797 | 17..1813 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:15:26 Download gff for
BO18087.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slc45-1-RB | 957..2753 | 17..1815 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:09:33 Download gff for
BO18087.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4484-RA | 1..1797 | 17..1813 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:10:52 Download gff for
BO18087.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slc45-1-RB | 957..2753 | 17..1815 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:10:52 Download gff for
BO18087.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9203598..9203772 | 1420..1594 | 100 | <- | Minus |
| 3L | 9203317..9203537 | 1595..1815 | 99 | <- | Minus |
| 3L | 9204098..9205500 | 17..1419 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:15:26 Download gff for
BO18087.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9196417..9196637 | 1595..1815 | 99 | <- | Minus |
| arm_3L | 9196698..9196872 | 1420..1594 | 100 | <- | Minus |
| arm_3L | 9197198..9198600 | 17..1419 | 100 | | Minus |
BO18087.pep Sequence
Translation from 16 to 1831
> BO18087.pep
MVGVTADASQANQLSSVRNPMIKYMLKTRENHAREQDRDYSHVFRRKTRF
EMFRLSAIAMAIEFAYAAETSFVSPILLQIGVDHKHMSMTWGLSPLIGFF
MSPLLGSISDRCKLRWGRRRPIISILSFGIMCGLILVPYGKDLGLLLGDA
GYTYAESALNFTSSSGGSVAALVSGEATTGPSASDYKFAVILTILGMVLL
DFDADTCQTPARTYLLDMCVPEEQPKAMTMFALFAGFGGTIGYAIGGVDW
ETTHIGSFMGGNIPTVFTLVTIIFAVCYLITVTTFREIPLPLIEQDELLR
PLSEQAIKKELKKKNNTIYYIQETTQLELQMASDDPKRLEALQGSYQNGY
SPAVEKQGKSQDLETQSDYDAPVSLKAYLKSIFIMPYSMRMLALTNLFCW
MGHVTYCLYFTDFVGEAVFHGDPTAAPNSEAALNYEAGVRFGCWGMAIYA
FSCSIYSLSVTKLMKWFGTKAVYISGMIYYGIGMLVLGLWPTKWGVLVFS
TSAGILYGTIFTVPFILVARYHAKNCFSIKNGEIVPLKQARGLGTDVAII
SSMVFIAQLIVSLSVGPLVSWMDTTCAVLYASTFLSFLAAIAAMFVLYVA
SFLDH
BO18087.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:44:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Slc45-1-PD | 599 | CG4484-PD | 1..599 | 1..599 | 3094 | 100 | Plus |
| Slc45-1-PC | 599 | CG4484-PC | 1..599 | 1..599 | 3094 | 100 | Plus |
| Slc45-1-PB | 599 | CG4484-PB | 1..599 | 1..599 | 3094 | 100 | Plus |
| Slc45-1-PA | 599 | CG4484-PA | 1..599 | 1..599 | 3094 | 100 | Plus |
| CG45782-PA | 615 | CG45782-PA | 40..613 | 26..599 | 1290 | 44.8 | Plus |
