Clone BO18089 Report

Search the DGRC for BO18089

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:180
Well:89
Vector:pDNR-Dual
Associated Gene/Transcriptmei-P26-RA
Protein status:BO18089.pep: Imported from assembly
Sequenced Size:3601

Clone Sequence Records

BO18089.complete Sequence

3601 bp assembled on 2010-07-15

GenBank Submission: KX795563

> BO18089.complete
GAAGTTATCAGTCGACATGACTACTTTGGAGGAGCCTGTCCAGGCGGCGG
ACACGGTCGATCCGTGTCCTCCGGGGATTCCCAATCTGAAAACCGTTCTC
AGCGACGATGCCTCGAACTCATCGGTGCTGGAGGACATCGATGTGAGCAA
TACGAGCAGCAGTAGCTCCAGTTCTAGCAGCTCTAGCTCCAGCTCTGGTT
CCTGCTCGGGATCGGGCACCGATACGGACACCGGCAAGGGTAGCAGCAAT
GTCGGCAGTCTGGATGTGACTAGCTCATCGAGCATTGGTTCAGAGACTTC
CATCTCATCGACGGGCTCCACAGCCATTGCAGGACCATCCACTTTGCTAG
ACGATTCGAACTCATCCGGACTGGGCCTGGTGGTGGATGTGGATAGCAAC
GGGAGCAGCCAGGAGCTGAGCAGCCACGGCGTCACCGAGCTGGACTCGCT
GGAGGACTCGTGCAGCGGCCTAATGATCAAGGATGGGGATAAGCTATGCA
AGCTGTGCAGCTTACGCCTCGTGATGCCGCGCATCTTGTCTTGCCTCCAC
GTATTCTGTGAGGACTGCCTGCAGGCAGTGGTATCGAAGGACACGATGTC
GGCCAGCTCGCCCAACAGCTGCTCCTCGTCGTCGTTCGATGGCAGCGAGC
ACCAGAACCGTTTGTCCGCTGTGTTCATCGAATGCCCCGTGTGCAAGCAG
GAGACACCGCTGGGACCCAAGGGTATCAAGGCACTACCCTGCGACTATAT
CGTGACCAATATACTGGACCTCTCCAATTTGGAGTCCGAGCACATTGTGT
GCACATCGTGCAAGAGCAAAGAGGAGGCCATTTCGCGTTGCAACGACTGC
GCCAACTTTCTTTGCAATGGCTGCGATAACGCCCATAAGTATATGCGTTG
CTTCGAAAATCACCATGTTGTGCGCATCGAGGATCTGACCAAGAACGTCC
ACGACAAGCTGATCATCCATAAGCCAGTGTTCTGCCCACAGCACGTAAGC
GAGAATCTCAAGTACTATTGCTTCACCTGCCAGGTGCCCACGTGCAATGA
TTGCCTGCTGAGCGATCACAAGGGCAGCGATCATCATTATGAGACGGCCA
CGGTGGCGGAGCAGGCGGTTCGAGCCGATCTCGAGGAAACACTGAGTGAT
ACGCTCAAGAAGGCCGACTACTGCAACGATGCGGGTAGCAATCTGGGCAG
TGCCCTCACTGAACTCCAGTCACAGCACGATACTGTGCGGCAGCAAATCG
AGGATGCCTACAAGTGCTACAAGCGTATGCTAGAATCGATCAAGGATCAG
ATGCTTAACGAGCTGGGACGCTTGCACTCGGATCGCGAGCTAAAGATCAT
GGATCTGATGCAGAGCATGGAGAATACTATGGGCAAGCTGCAGCACGCTG
CCCAGTTTGGCCAGCGGGCTGTCGATAAGGCCAATTCCATAGAGTTTCTG
CTGCTGAAGCCCATCATCAGTGCCCAGTGCTTGAATCTCATGGAGCAGAC
GCCCAAGTGCGATATCAACTATCAGCTGCAATTTGACTCGAAGCCAGAGA
TGTTCGAGCAATTCGCCAGGGAGATGTTTGGCAAATTTCAAACGGATCAC
ATTGACTCTAGTCCCAAGAAGCTGGGGATGACCCAGCAGCTGCAACAGCA
ACAGCAGCAGCAGCAGCAGTTGCAACAGCAACAACATCAGCACCAGCACC
AAGTGCAACAACAACAGCATCATCATCAGCAGCAGCAGCAGCAGAAACAG
CAGGTGCAGCATCAACAGCAGCAGCAAAAGCTGCAGTTGCAGCAACAACA
GCAGCATCAACACAACTCAAACAATTTGATTGTCGGCCATCGTGGCAGCT
CCTCTGTCCAAGGGCGCCTGACCTCAGCTGTATTTAGCCCCATCTCGCTG
CCCTCCTCGCTGCAGAGTTCCTTCGATGGCGACACCAACTCGGTGATGAG
CAATTTCTCCATGATGGACTCGCCGCCGCAGCCATCATCGCAACAGCAAT
TGCCATCTGCCCAGCAGCAGTCTCAGCAGCAGCAGCAGCAACAGCAGCAG
CAACAGGCGGTGGTGCTGCAGCAGGTGCAACAGCAGCAGAAGCACCAGCA
ACACCAAGTGCAGCAGCAGCAACAGCAACAGGTGCTGCATCAGCCAACAT
CGGCCCAGTCCATGCCGCAGCAGTTGGGTCAGCTCGTTGCACCGCAGGGA
ATTGTCCAGCAGGCTGGACATGTCAATCTCAACGCTGGTCCCGGTCCGAA
TATATCCATCAATGGACTGGGCGCCGGTGGTCCGCCACCTAGTTTTAGCA
TGCTGGAGTACAACATCTCACGACTGGCCAGCTTGACGGAAACAATGCCA
GACACCCTCAACGATGCACTGGCTGTTGGTGGAGGAGCAGCCGGACCCGT
TCCGAATGTTGTGGCCCAAGTGCCTGGTGGTTCGGCCGTGACTGGTGCAG
CCGTAGTGGGAGCATCGCATGCGCATCAGCAGCAATCGCAGGCCGTAATG
CCGGCATCGGCGGTCACTCCAACGCAGCCAATTACCTTGGCTGACATCCT
ATCGGGCGACCAGCGGGCGCTTAATAATCTCCAGGCGCTGGCCAAGCTGG
GACTCAACAACAATGATTTCTGCATGCCACCGGCTACATCGCCCAGCCTG
CAGTCCCTCAATCCAATCGTTGGTGGCGTGGAGGACATGGGACTCAATAA
CTTCCATGCCGTGGCTGCGCCAGGCACCACCAGTGTGGTCACCGGCCGGA
ACAAGGCCACTCCGATGCAGATCCGTTGCAAATTCGGTTCACTGGGCACC
GCCAAGGGTCAGTTTAATTCACCACATGGATTTTGCCTGGGCGTCGACGA
GGAGATCATCGTGGCGGACACGAACAACCATCGCATCGAGGTCTTCGACA
AGATGGGTGCCCTCAAGTTCCAGTTCGGTGTGGCCGGCAAGGAGGAGGGC
CAGCTCTGGTATCCGCGCAAGGTGGCCGTGATGCATAACAATGGCAAATT
TGTGGTCTGCGATCGTGGAAACGAACGTTCTCGCATGCAAATCTTTTCCA
AGTGCGGACACTTTATGCGCAAGATAGCTATTAGATACATTGATATCGTG
GCTGGCTTGGCTGTCACAGCTAAGGGTCACATTGTGGCCGTGGATAGCGT
GTCGCCCACCGTCTTTGTGATCTCCGAGGAGGGAGAATTGGTTCGCTGGT
TCGACTGCAGCGACTATATGCGCGAGCCCTCCGACATCGCTATACGAGAC
AACGATTTTTACGTGTGCGACTTCAAAGGCCATTGCGTGGCCGTTTTCCA
GGACGACGGCACATTCCTCTATCGCATTGGCAACGAGAAGGTCACTTGCT
TCCCCAATGGCATTGATATATCAAATGCCGGTGACGTGCTCATCGGTGAT
TCGCACGGCAATCGCTTCCACGTCGCCTGCTATTCCCGCGAAGGCGCCCT
TCAGTCCGAGTTCGAGTGTCCCCATGTAAAGGTTTCCCGCTGCTGCGGAC
TAAAAATCACATCCGAGGGCTATGTGGTTACGCTGGCAAAGAATAATCAT
CATGTTCTAGTCCTGAACACCCTCTATGTTCACGCAAGCTTTCTAGACCA
T

BO18089.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:55:00
Subject Length Description Subject Range Query Range Score Percent Strand
mei-P26-RD 3570 CG12218-PD 1..3567 17..3583 17835 100 Plus
mei-P26-RB 3570 CG12218-PB 1..3567 17..3583 17835 100 Plus
mei-P26-RA 3570 CG12218-PA 1..3567 17..3583 17835 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:55:02
Subject Length Description Subject Range Query Range Score Percent Strand
mei-P26-RD 8899 CG12218-RD 955..4521 17..3583 17835 100 Plus
mei-P26-RB 22580 CG12218-RB 517..4083 17..3583 17835 100 Plus
mei-P26-RA 5232 CG12218-RA 819..4385 17..3583 17835 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:54:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9167155..9169262 508..2615 10540 100 Plus
X 23542271 X 9166539..9167032 17..510 2470 100 Plus
X 23542271 X 9169516..9169985 2615..3084 2350 100 Plus
X 23542271 X 9170302..9170538 3247..3483 1185 100 Plus
X 23542271 X 9170057..9170222 3083..3248 830 100 Plus
X 23542271 X 9170702..9170812 3473..3583 525 98.2 Plus
Blast to na_te.dros performed on 2014-11-28 04:54:59 has no hits.

BO18089.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-15 10:00:34 Download gff for BO18089.complete
Subject Subject Range Query Range Percent Splice Strand
mei-P26-RA 822..4388 17..3585 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:05:06 Download gff for BO18089.complete
Subject Subject Range Query Range Percent Splice Strand
mei-P26-RA 819..4385 17..3585 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:39:55 Download gff for BO18089.complete
Subject Subject Range Query Range Percent Splice Strand
mei-P26-RA 819..4385 17..3585 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:39:55 Download gff for BO18089.complete
Subject Subject Range Query Range Percent Splice Strand
X 9166539..9167032 17..510 100 -> Plus
X 9167158..9169262 511..2615 100 -> Plus
X 9169517..9169985 2616..3084 100 -> Plus
X 9170059..9170222 3085..3248 100 -> Plus
X 9170304..9170536 3249..3481 100 -> Plus
X 9170711..9170812 3482..3585 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:05:06 Download gff for BO18089.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9060572..9061065 17..510 100 -> Plus
arm_X 9061191..9063295 511..2615 100 -> Plus
arm_X 9063550..9064018 2616..3084 100 -> Plus
arm_X 9064092..9064255 3085..3248 100 -> Plus
arm_X 9064337..9064569 3249..3481 100 -> Plus
arm_X 9064744..9064845 3482..3585 98   Plus

BO18089.3prime Sequence

845 bp (703 high quality bases) assembled on 2006-10-13

> BO18089.3prime
ATGGTCTAGAAAGCTTGCGTGAACATAGAGGGTGTTCAGGACTAGAACAT
GATGATTATTCTTTGCCAGCGTAACCACATAGCCCTCGGATGTGATTTTT
AGTCCGCAGCAGCGGGAAACCTTTACATGGGGACACTCGAACTCGGACTG
AAGGGCGCCTTCGCGGGAATAGCAGGCGACGTGGAAGCGATTGCCGTGCG
AATCACCGATGAGCACGTCACCGGCATTTGATATATCAATGCCATTGGGG
AAGCAAGTGACCTTCTCGTTGCCAATGCGATAGAGGAATGTGCCGTCGTC
CTGGAAAACGGCCACGCAATGGCCTTTGAAGTCGCACACGTAAAAATCGT
TGTCTCGTATAGCGATGTCGGAGGGCTCGCGCATATAGTCGCTGCAGTCG
AACCAGCGAACCAATTCTCCCTCCTCGGAGATCACAAAGACGGTGGGCGA
CACGCTATCCACGGCCACAATGTGACCCTTAGCTGTGACAGCCAAGCCAG
CCACGATATCAATGTATCTAATAGCTATCTTGCGCATAAAGTGTCCGCAC
TTGGAAAAGATTTGCATGCGAGAACGTTCGTTTCCACGATCGCAGACCAC
AAATTTGCCATTGTTATGCATCACGGCCACCTTGCGCGGATACCAGAGCT
GGCCCTCCTCCTTGCCGGCCACACCGAACTGGAACTTGAGGGCACCCATC
TTGTCGAAGACCTCGATGCGATGGTTGTTCGTGTCCGCCACGATGATCTC
CTCGTCGACGCCCAGGCAAAATCCATGTGGTGAATTAAACTGACCCTTGG
CGGTGCCCAGTGAACCGAATTTGCAACGGATCTGCATCGGAGTGG

BO18089.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:52:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG12218-PA 3570 mei-P26-RA 2741..3567 845..19 4135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:49:40
Subject Length Description Subject Range Query Range Score Percent Strand
mei-P26-RD 8899 CG12218-RD 3695..4521 845..19 4135 100 Minus
mei-P26-RC 23041 CG12218-RC 3718..4544 845..19 4135 100 Minus
mei-P26-RB 22580 CG12218-RB 3257..4083 845..19 4135 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:49:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9169658..9169985 845..518 1640 100 Minus
X 23542271 X 9170302..9170538 355..119 1185 100 Minus
X 23542271 X 9170057..9170222 519..354 830 100 Minus
X 23542271 X 9170702..9170812 129..19 525 98.2 Minus
Blast to na_te.dros performed on 2015-02-12 16:49:39 has no hits.

BO18089.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:18:07 Download gff for BO18089.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12218-PA 2741..3570 16..845 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:03:57 Download gff for BO18089.3prime
Subject Subject Range Query Range Percent Splice Strand
mei-P26-RB 3257..4083 19..845 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:38:11 Download gff for BO18089.3prime
Subject Subject Range Query Range Percent Splice Strand
mei-P26-RB 3257..4083 19..845 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:38:11 Download gff for BO18089.3prime
Subject Subject Range Query Range Percent Splice Strand
X 9169658..9169985 518..845 100 -> Minus
X 9170059..9170222 354..517 100 -> Minus
X 9170304..9170536 121..353 100 -> Minus
X 9170711..9170812 19..120 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:03:57 Download gff for BO18089.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9063691..9064018 518..845 100 -> Minus
arm_X 9064092..9064255 354..517 100 -> Minus
arm_X 9064337..9064569 121..353 100 -> Minus
arm_X 9064744..9064845 19..120 100   Minus

BO18089.5prime Sequence

874 bp (771 high quality bases) assembled on 2006-10-13

> BO18089.5prime
GAAGTTATCAGTCGACATGACTACTTTGGAGGAGCCTGTCCAGGCGGCGG
ACACGGTCGATCCGTGTCCTCCGGGGATTCCCAATCTGAAAACCGTTCTC
AGCGACGATGCCTCGAACTCATCGGTGCTGGAGGACATCGATGTGAGCAA
TACGAGCAGCAGTAGCTCCAGTTCTAGCAGCTCTAGCTCCAGCTCTGGTT
CCTGCTCGGGATCGGGCACCGATACGGACACCGGCAAGGGTAGCAGCAAT
GTCGGCAGTCTGGATGTGACTAGCTCATCGAGCATTGGTTCAGAGACTTC
CATCTCATCGACGGGCTCCACAGCCATTGCAGGACCATCCACTTTGCTAG
ACGATTCGAACTCATCCGGACTGGGCCTGGTGGTGGATGTGGATAGCAAC
GGGAGCAGCCAGGAGCTGAGCAGCCACGGCGTCACCGAGCTGGACTCGCT
GGAGGACTCGTGCAGCGGCCTAATGATCAAGGATGGGGATAAGCTATGCA
AGCTGTGCAGCTTACGCCTCGTGATGCCGCGCATCTTGTCTTGCCTCCAC
GTATTCTGTGAGGACTGCCTGCAGGCAGTGGTATCGAAGGACACGATGTC
GGCCAGCTCGCCCAACAGCTGCTCCTCGTCGTCGTTCGATGGCAGCGAGC
ACCAGAACCGTTTGTCCGCTGTGTTCATCGAATGCCCCGTGTGCAAGCAG
GAGACACCGCTGGGACCCAAGGGTATCAAGGCACTACCCTGCGACTATAT
CGTGACAAATATACTGGACCTCTCCAATTTGGAGTCCGAGCACATTGTGT
GCACATCGTGCAAGAGCAAAGAGGAGGCCATTTCGCGTTGCAACGACTGC
GCCAACTTTCTTTTGCATGGCTGC

BO18089.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:52:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG12218-PA 3570 mei-P26-RA 1..847 17..863 4210 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:44:58
Subject Length Description Subject Range Query Range Score Percent Strand
mei-P26-RD 8899 CG12218-RD 955..1812 17..874 4230 99.7 Plus
mei-P26-RC 23041 CG12218-RC 927..1784 17..874 4230 99.7 Plus
mei-P26-RB 22580 CG12218-RB 517..1374 17..874 4230 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:44:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9166539..9167032 17..510 2470 100 Plus
X 23542271 X 9167155..9167521 508..874 1775 98.9 Plus
Blast to na_te.dros performed on 2015-02-11 15:44:56 has no hits.

BO18089.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:18:08 Download gff for BO18089.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12218-PA 1..858 17..874 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:15:35 Download gff for BO18089.5prime
Subject Subject Range Query Range Percent Splice Strand
mei-P26-RB 507..1374 5..874 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:41:57 Download gff for BO18089.5prime
Subject Subject Range Query Range Percent Splice Strand
mei-P26-RB 507..1374 5..874 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:41:57 Download gff for BO18089.5prime
Subject Subject Range Query Range Percent Splice Strand
X 9166529..9167032 5..510 99 -> Plus
X 9167158..9167521 511..874 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:15:35 Download gff for BO18089.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9060562..9061065 5..510 99 -> Plus
arm_X 9061191..9061554 511..874 99   Plus

BO18089.pep Sequence

Translation from 16 to 3601

> BO18089.pep
MTTLEEPVQAADTVDPCPPGIPNLKTVLSDDASNSSVLEDIDVSNTSSSS
SSSSSSSSSSGSCSGSGTDTDTGKGSSNVGSLDVTSSSSIGSETSISSTG
STAIAGPSTLLDDSNSSGLGLVVDVDSNGSSQELSSHGVTELDSLEDSCS
GLMIKDGDKLCKLCSLRLVMPRILSCLHVFCEDCLQAVVSKDTMSASSPN
SCSSSSFDGSEHQNRLSAVFIECPVCKQETPLGPKGIKALPCDYIVTNIL
DLSNLESEHIVCTSCKSKEEAISRCNDCANFLCNGCDNAHKYMRCFENHH
VVRIEDLTKNVHDKLIIHKPVFCPQHVSENLKYYCFTCQVPTCNDCLLSD
HKGSDHHYETATVAEQAVRADLEETLSDTLKKADYCNDAGSNLGSALTEL
QSQHDTVRQQIEDAYKCYKRMLESIKDQMLNELGRLHSDRELKIMDLMQS
MENTMGKLQHAAQFGQRAVDKANSIEFLLLKPIISAQCLNLMEQTPKCDI
NYQLQFDSKPEMFEQFAREMFGKFQTDHIDSSPKKLGMTQQLQQQQQQQQ
QLQQQQHQHQHQVQQQQHHHQQQQQQKQQVQHQQQQQKLQLQQQQQHQHN
SNNLIVGHRGSSSVQGRLTSAVFSPISLPSSLQSSFDGDTNSVMSNFSMM
DSPPQPSSQQQLPSAQQQSQQQQQQQQQQQAVVLQQVQQQQKHQQHQVQQ
QQQQQVLHQPTSAQSMPQQLGQLVAPQGIVQQAGHVNLNAGPGPNISING
LGAGGPPPSFSMLEYNISRLASLTETMPDTLNDALAVGGGAAGPVPNVVA
QVPGGSAVTGAAVVGASHAHQQQSQAVMPASAVTPTQPITLADILSGDQR
ALNNLQALAKLGLNNNDFCMPPATSPSLQSLNPIVGGVEDMGLNNFHAVA
APGTTSVVTGRNKATPMQIRCKFGSLGTAKGQFNSPHGFCLGVDEEIIVA
DTNNHRIEVFDKMGALKFQFGVAGKEEGQLWYPRKVAVMHNNGKFVVCDR
GNERSRMQIFSKCGHFMRKIAIRYIDIVAGLAVTAKGHIVAVDSVSPTVF
VISEEGELVRWFDCSDYMREPSDIAIRDNDFYVCDFKGHCVAVFQDDGTF
LYRIGNEKVTCFPNGIDISNAGDVLIGDSHGNRFHVACYSREGALQSEFE
CPHVKVSRCCGLKITSEGYVVTLAKNNHHVLVLNTLYVHASFLDH

BO18089.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:30:05
Subject Length Description Subject Range Query Range Score Percent Strand
mei-P26-PD 1189 CG12218-PD 1..1189 1..1189 6211 100 Plus
mei-P26-PB 1189 CG12218-PB 1..1189 1..1189 6211 100 Plus
mei-P26-PA 1189 CG12218-PA 1..1189 1..1189 6211 100 Plus
mei-P26-PC 1206 CG12218-PC 1..1206 1..1189 6183 98.6 Plus
mei-P26-PE 1206 CG12218-PE 1..1206 1..1189 6183 98.6 Plus