Clone BO18091 Report

Search the DGRC for BO18091

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:180
Well:91
Vector:pDNR-Dual
Associated Gene/TranscriptCG12236-RA
Protein status:BO18091.pep: Imported from assembly
Sequenced Size:1693

Clone Sequence Records

BO18091.3prime Sequence

795 bp (771 high quality bases) assembled on 2006-10-13

> BO18091.3prime
ATGGTCTAGAAAGCTTGCGTGATCGCTGTACTCGATCTTGGTGAATCCCT
TGGTCGAACAGCCCATTTCGCGATGAAAACGCGAGTTGTGTGTGGAGAGG
GACCACTTTGTCTTGAAGCTCTTCATGCAGATGAAGCACTCGTGCTCCTT
GCCCTGAATCTCCGAATGCCTGGAGGCGATGTGTCGCCGCAGCGCGTTCA
CCGACTTGAGCGGCCTGCCGCAGAAGCTGCAGTTCAGCGGTGCGAGGCCG
GTATACTGGACGCTCTCCTCATCGCTGCCAGCCGGTGGCGCGGATGCAGT
TGCTCCACTCTTGGACGACCTGGCAACCGTCACGGATCCTGGCTTCAAAG
CGGCATTCGTCCCGCTGGCCTTGCTGTCCGATTTGACCTGCGTCACAGAC
ACCGTAGTCGAGGGACCAGTCGTCGCGCTGCCGCCACCCGAATCCTCCAT
CACTTGGCCGGAACCCGCACCCGGCGTCCCGCTGGCGGTGCCCAGCAATC
GGGTCATCTCAATGGCAATTTCGGCGTTGTCCGCATCCGCCTGGTACTTC
TCCTCCATTTCGGACTCGGTGAGTATTTCATACTCGGATGAGTACTGCGC
CACATTCTGCGCCGCTGCGGTGGTGGCATCCTGCGACGTTTGCGGCGTTG
CTCCATCCGACAGGCGGTCATCCACTTCGCCAACAATGTAATCGGGTATG
TCCATCTTGACGGCGCCGCGCAGGAAAGTCATCTCGGCAGTTTTCACTAT
GGTCTGCTCATCCTTGACGGCGTATTCAACGGTTTCGGTGGTGTA

BO18091.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:53:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG12236-PA 1662 CG12236-RA 883..1659 795..19 3860 99.8 Minus
CG12236-PB 1533 CG12236-RB 883..1324 795..354 2185 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:45:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG12236-RA 2335 CG12236-RA 1240..2016 795..19 3870 99.9 Minus
CG12236-RB 3038 CG12236-RB 1240..1681 795..354 2195 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:45:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5912425..5912760 354..19 1680 100 Minus
X 23542271 X 5909613..5909849 740..504 1185 100 Minus
X 23542271 X 5909912..5910061 503..354 750 100 Minus
X 23542271 X 5909483..5909537 795..741 260 98.2 Minus
Blast to na_te.dros performed on 2015-02-11 15:45:38 has no hits.

BO18091.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:18:10 Download gff for BO18091.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12236-PA 884..1662 16..794 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:15:36 Download gff for BO18091.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12236-RA 1251..2026 19..794 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:42:07 Download gff for BO18091.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12236-RA 1241..2016 19..794 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:42:07 Download gff for BO18091.3prime
Subject Subject Range Query Range Percent Splice Strand
X 5909484..5909537 741..794 98 -> Minus
X 5909613..5909849 504..740 100 -> Minus
X 5909912..5910061 354..503 100 -> Minus
X 5912426..5912760 19..353 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:15:36 Download gff for BO18091.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5803517..5803570 741..794 98 -> Minus
arm_X 5803646..5803882 504..740 100 -> Minus
arm_X 5803945..5804094 354..503 100 -> Minus
arm_X 5806459..5806793 19..353 100   Minus

BO18091.5prime Sequence

833 bp (780 high quality bases) assembled on 2006-10-13

> BO18091.5prime
GAAGTTATCAGTCGACATGGCCACCACCCAGCAGTACTCGCTGCGGTGGA
ACAACTACCTGCGCCACCTCACCTACTCCCTGGACAACCACCGGCTGAAC
GATGACTTCGTGGACGTCAGCCTGTGCGTGGATGGACGCAGGATCAAGGC
CCACAAGGTGGTACTCTCCTCCTGCTCGTCCTACTTTAAGGAGATATTCA
AGGAGAACCCACATCCGCATCCAGTCATTATATTTAAGTTTATCAAGTTC
GAGGATCTCAATTCGATTATCGAGTTCATGTACCAGGGCGAAGTCAATGT
GCAGCAGGAGGCGCTGCAATCGTTCCTGCAAACTGCCGAGCTGCTGGCCG
TCCAAGGACTCACCGCCGAGGAGAAGGAGAAGCCGCAGATCCCGGTGGCG
CCGCTGATCAGCGAGCACAAGCTGATCAAGACCATACCGAGCACCATACG
CGCGGTCAACGAGCAGCAGCAGCAGGTGTCCAATGTGGCCCAGGCGCAGA
CAGCTACGCAAACCATCGAAATACCCGCGGCCACTTTGCTGCAAGCCACC
AACGCCAGCCAGGTGCCATCGCAGGTGGTCGCAGCAGCCGCAGCAGCCGC
AGCGGCACAACAGCTGCAGGTCCAGCATCAACAGCAGCAGCATCACCATG
TACAAACCACCCAGATTCAGCACATCCAAGTGCAATCGGCACCGCCCCCG
CAACAGCAGCAACAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
ACAACAGCAGCAGCAGCAGCAATCACAGCAGCAACAAACGACGCCCGTGC
AGACGCAACACCTGACCATCACCAATGCGGTGG

BO18091.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:53:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG12236-PA 1662 CG12236-RA 1..817 17..833 4085 100 Plus
CG12236-PB 1533 CG12236-RB 1..817 17..833 4085 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:14:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG12236-RB 3038 CG12236-RB 358..1174 17..833 4085 100 Plus
CG12236-RA 2335 CG12236-RA 358..1174 17..833 4085 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:14:13
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5908869..5909417 285..833 2745 100 Plus
X 23542271 X 5908492..5908762 17..287 1355 100 Plus
Blast to na_te.dros performed 2015-02-10 22:14:16
Subject Length Description Subject Range Query Range Score Percent Strand
HeT-A 6083 HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). 2031..2066 422..388 114 83.3 Minus

BO18091.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:18:11 Download gff for BO18091.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12236-PB 1..817 17..833 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:51:22 Download gff for BO18091.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12236-RA 368..1184 17..833 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:24 Download gff for BO18091.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12236-RA 358..1174 17..833 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:24 Download gff for BO18091.5prime
Subject Subject Range Query Range Percent Splice Strand
X 5908492..5908761 17..286 100 -> Plus
X 5908871..5909417 287..833 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:51:22 Download gff for BO18091.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5802525..5802794 17..286 100 -> Plus
arm_X 5802904..5803450 287..833 100   Plus

BO18091.complete Sequence

1693 bp assembled on 2008-11-10

GenBank Submission: KX796820

> BO18091.complete
GAAGTTATCAGTCGACATGGCCACCACCCAGCAGTACTCGCTGCGGTGGA
ACAACTACCTGCGCCACCTCACCTACTCCCTGGACAACCACCGGCTGAAC
GATGACTTCGTGGACGTCAGCCTGTGCGTGGATGGACGCAGGATCAAGGC
CCACAAGGTGGTACTCTCCTCCTGCTCGTCCTACTTTAAGGAGATATTCA
AGGAGAACCCACATCCGCATCCAGTCATTATATTTAAGTTTATCAAGTTC
GAGGATCTCAATTCGATTATCGAGTTCATGTACCAGGGCGAAGTCAATGT
GCAGCAGGAGGCGCTGCAATCGTTCCTGCAAACTGCCGAGCTGCTGGCCG
TCCAAGGACTCACCGCCGAGGAGAAGGAGAAGCCGCAGATCCCGGTGGCG
CCGCTGATCAGCGAGCACAAGCTGATCAAGACCATACCGAGCACCATACG
CGCGGTCAACGAGCAGCAGCAGCAGGTGTCCAATGTGGCCCAGGCGCAGA
CAGCTACGCAAACCATCGAAATACCCGCGGCCACTTTGCTGCAAGCCACC
AACGCCAGCCAGGTGCCATCGCAGGTGGTCGCAGCAGCCGCAGCAGCCGC
AGCGGCACAACAGCTGCAGGTCCAGCATCAACAGCAGCAGCATCACCATG
TACAAACCACCCAGATTCAGCACATCCAAGTGCAATCGGCACCGCCCCCG
CAACAGCAGCAACAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
ACAACAGCAGCAGCAGCAGCAATCACAGCAGCAACAAACGACGCCCGTGC
AGACGCAACACCTGACCATCACCAATGCGGTGGCCCTGCCGGCGGCCAGT
TCGGTTAAGAAGCGAAAGATCACGTTCTCGGACGACGACGACAACATGTA
CACCACCGAAACCGTTGACTACGCCGTCAAGGATGAGCAGACCATAGTGA
AAACTGCCGAGATGACTTTCCTGCGCGGCGCCGTCAAGATGGACATACCC
GATTACATTGTTGGCGAAGTGGATGACCGCCTGTCGGATGGAGCAACGCC
GCAAACGTCGCAGGATGCCACCACCGCAGCGGCGCAGAATGTGGCGCAGT
ACTCATCCGAGTATGAAATACTCACCGAGTCCGAAATGGAGGAGAAGTAC
CAGGCGGATGCGGACAACGCCGAAATTGCCATTGAGATGACCCGATTGCT
GGGCACCGCCAGCGGGACGCCGGGTGCGGGTTCCGGCCAAGTGATGGAGG
ATTCGGGTGGCGGCAGCGCGACGACTGGTCCCTCGACTACGGTGTCTGTG
ACGCAGGTCAAATCGGACAGCAAGGCCAGCGGGACGAATGCCGCTTTGAA
GCCAGGATCCGTGACGGTTGCCAGGTCGTCCAAGAGTGGAGCAACTGCAT
CCGCGCCACCGGCTGGCAGCGATGAGGAGAGCGTCCAGTATACCGGCCTC
GCACCGCTGAACTGCAGCTTCTGCGGCAGGCCGCTCAAGTCGGTGAACGC
GCTGCGGCGACACATCGCCTCCAGGCATTCGGAGATTCAGGGCAAGGAGC
ACGAGTGCTTCATCTGCATGAAGAGCTTCAAGACAAAGTGGTCCCTCTCC
ACACACAACTCGCGTTTTCATCGCGAAATGGGCTGTTCGACCAAGGGATT
CACCAAGATCGAGTACAGCGATCACGCAAGCTTTCTAGACCAT

BO18091.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:49:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG12236-RA 1662 CG12236-PA 1..1659 17..1675 8295 100 Plus
CG12236-RB 1533 CG12236-PB 1..1324 17..1340 6620 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:49:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG12236-RA 2335 CG12236-RA 358..2016 17..1675 8295 100 Plus
CG12236-RB 3038 CG12236-RB 358..1681 17..1340 6620 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:49:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5908869..5909537 285..953 3345 100 Plus
X 23542271 X 5912425..5912760 1340..1675 1680 100 Plus
X 23542271 X 5908492..5908762 17..287 1355 100 Plus
X 23542271 X 5909613..5909849 954..1190 1185 100 Plus
X 23542271 X 5909912..5910061 1191..1340 750 100 Plus
Blast to na_te.dros performed 2014-11-27 14:49:17
Subject Length Description Subject Range Query Range Score Percent Strand
HeT-A 6083 HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). 2031..2066 422..388 114 83.3 Minus

BO18091.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:18:03 Download gff for BO18091.complete
Subject Subject Range Query Range Percent Splice Strand
CG12236-RA 368..2026 17..1675 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:52:37 Download gff for BO18091.complete
Subject Subject Range Query Range Percent Splice Strand
CG12236-RA 368..2026 17..1677 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-11 13:12:22 Download gff for BO18091.complete
Subject Subject Range Query Range Percent Splice Strand
CG12236-RA 368..2026 17..1677 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:19:22 Download gff for BO18091.complete
Subject Subject Range Query Range Percent Splice Strand
CG12236-RA 358..2016 17..1677 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:19:22 Download gff for BO18091.complete
Subject Subject Range Query Range Percent Splice Strand
X 5912426..5912760 1341..1677 99   Plus
X 5908492..5908761 17..286 100 -> Plus
X 5908871..5909537 287..953 100 -> Plus
X 5909613..5909849 954..1190 100 -> Plus
X 5909912..5910061 1191..1340 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:52:37 Download gff for BO18091.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5802525..5802794 17..286 100 -> Plus
arm_X 5802904..5803570 287..953 100 -> Plus
arm_X 5803646..5803882 954..1190 100 -> Plus
arm_X 5803945..5804094 1191..1340 100 -> Plus
arm_X 5806459..5806793 1341..1677 99   Plus

BO18091.pep Sequence

Translation from 16 to 1693

> BO18091.pep
MATTQQYSLRWNNYLRHLTYSLDNHRLNDDFVDVSLCVDGRRIKAHKVVL
SSCSSYFKEIFKENPHPHPVIIFKFIKFEDLNSIIEFMYQGEVNVQQEAL
QSFLQTAELLAVQGLTAEEKEKPQIPVAPLISEHKLIKTIPSTIRAVNEQ
QQQVSNVAQAQTATQTIEIPAATLLQATNASQVPSQVVAAAAAAAAAQQL
QVQHQQQQHHHVQTTQIQHIQVQSAPPPQQQQQQQQQQQQQQQQQQQQQQ
QQSQQQQTTPVQTQHLTITNAVALPAASSVKKRKITFSDDDDNMYTTETV
DYAVKDEQTIVKTAEMTFLRGAVKMDIPDYIVGEVDDRLSDGATPQTSQD
ATTAAAQNVAQYSSEYEILTESEMEEKYQADADNAEIAIEMTRLLGTASG
TPGAGSGQVMEDSGGGSATTGPSTTVSVTQVKSDSKASGTNAALKPGSVT
VARSSKSGATASAPPAGSDEESVQYTGLAPLNCSFCGRPLKSVNALRRHI
ASRHSEIQGKEHECFICMKSFKTKWSLSTHNSRFHREMGCSTKGFTKIEY
SDHASFLDH

BO18091.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:05:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG12236-PA 553 CG12236-PA 1..553 1..553 2810 100 Plus
CG12236-PB 510 CG12236-PB 1..502 1..537 2255 86.2 Plus
BtbVII-PE 743 CG43365-PE 2..258 3..284 402 35.7 Plus
BtbVII-PD 743 CG43365-PD 2..258 3..284 402 35.7 Plus
BtbVII-PB 743 CG11494-PB 2..258 3..284 402 35.7 Plus