Clone Sequence Records
BO18093.3prime Sequence
795 bp (723 high quality bases) assembled on 2006-10-13
> BO18093.3prime
ATGGTCTAGAAAGCTTGCTACAGACTGTCCATTCATAAACGCACTTATAT
TGGGACATTTATCTAATTTCTCGGGATCTATTTGGAAAACCTTGGACAAA
CGTTTCCAACTTTGCGCATCAAAGTAGTAGAAGGTGCCGCGCTCTTTTGT
ACCATTTTTTTCATATTGATCAATGCCAGGAATTCGAGTTATCCATATTT
TCTCCTCCACGTGGTATCGCCACTCGCGACTATGCAATTCAGCAGCTGCC
ATCAATTGCATCATATCGCCGATGTTCGTGTAAAAAAGGAAAAAGAGCAG
GTCTTCTTGCAGCTTTTTCAGTACCGGCGCTGTTAGTTTGTCTCTTATCG
CAAAGTTAATCAGATATTCGGGTGGCACGTTGAACTCAACGTCTTGTGCT
CTGCAGGGCTGTGCTACGAAGGGGCCAGCGAAGGTTGTATGCAAGCTCTC
CTGCGAGTTCAGGTTCAGGCCTAAACCCGTGAGATCCGTACCCAAGGAGA
GCGTCACCAGATTGGGATCCGTTTCTGCAGCCCGAATGAACGTCAGCAGG
CCAACCATGCCGAACTGGTTGTTCACCATGGTCGCTGGTATGTTTGTGAC
CTTCCCATCTGGCGAAGTTTGCACGCCGCTCTTTACAAGTTTATCGTTGC
TGGAATTATCGTTCAGATGCTCGCCGCCCGCTCCGCTCCCAAACGAGCCG
CTTCCACTCCCCAGGCCGCCGCCTACGCCCATCATGGCATTGCTGTTGGG
TACGCTGTTGACGCCCCCATGCCGCTGTTACTGCCCACCAGTCCT
BO18093.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:53:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2161-PA | 1758 | Rga-RA | 978..1755 | 795..19 | 3800 | 99.6 | Minus |
| CG2161-PB | 1740 | Rga-RB | 960..1737 | 795..19 | 3800 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:38:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rga-RC | 2514 | CG2161-RC | 1704..2481 | 795..19 | 3835 | 99.6 | Minus |
| Rga-RB | 2816 | CG2161-RB | 2006..2783 | 795..19 | 3835 | 99.6 | Minus |
| Rga-RA | 2902 | CG2161-RA | 2024..2801 | 795..19 | 3835 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:38:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5607376..5607592 | 19..235 | 1085 | 100 | Plus |
| 3R | 32079331 | 3R | 5607953..5608158 | 401..606 | 1030 | 100 | Plus |
| 3R | 32079331 | 3R | 5608449..5608640 | 605..795 | 880 | 98.4 | Plus |
| 3R | 32079331 | 3R | 5607683..5607851 | 235..403 | 845 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 13:38:07 has no hits.
BO18093.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:18:12 Download gff for
BO18093.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2161-PB | 960..1740 | 15..795 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:46:21 Download gff for
BO18093.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rga-RA | 2024..2808 | 11..795 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:03:27 Download gff for
BO18093.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rga-RA | 2024..2808 | 11..795 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:03:27 Download gff for
BO18093.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5608450..5608640 | 606..795 | 98 | | Plus |
| 3R | 5607953..5608157 | 401..605 | 100 | <- | Plus |
| 3R | 5607369..5607592 | 11..235 | 98 | <- | Plus |
| 3R | 5607684..5607848 | 236..400 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:46:21 Download gff for
BO18093.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1433675..1433879 | 401..605 | 100 | <- | Plus |
| arm_3R | 1433091..1433314 | 11..235 | 98 | <- | Plus |
| arm_3R | 1433406..1433570 | 236..400 | 100 | <- | Plus |
| arm_3R | 1434172..1434362 | 606..795 | 98 | | Plus |
BO18093.5prime Sequence
781 bp (750 high quality bases) assembled on 2006-10-13
> BO18093.5prime
GAAGTTATCAGTCGACATGGCGAATTTAAATTTTCAACAACCCCCGAGAA
GTATAGCGAACGCGGCGTTAGCTGGCCGGACAACAGGCGGATTCGGTGGT
AGCTCCCTGGCTGGCCATGTGACGCCCACGTCGGGCATGTTTCAAACCGA
CTTCGCCAACTCCTATCCAGGAACGGCGAACTACGGACAGGCGCCGCAGC
AGCAGCAACAACAGCAGCAGCAGCCCCAACTGTCGCCGAACCGGAATGCC
CAGCTGTCGGTCGGCGGACCCGCCATCTCGAGCGGCAACCGCAACGCCAA
CCTCTTCGGCCAGCGTCAGTTTGTGGAGCGGCGAGCCATGCAAGGATTGG
GCAGTGGCCCCATGTCGAACATGGGCAACTTCATGCAGACGGGTCGCGGC
GGCTACGGAACGGGCGGAGGCGGTGGCGGTCCTTTGAATAACTTCCACGT
GTTCGGCGGCGGCGGTGGTAGCGACACCTCCACGCCTGCCCTGCTCGATC
CCACGGAGTTCCCCTCGCTGACGAATGCGCGCGGCCAGAACGACCAGACA
CTGCCCCAATCGAATCCGCTCCAGCCGCCGGGCAGCAAACCCTATGGTAA
TTTCTTTACCTCTTTTGGCATGGTGAAGCAACCGACGTCAGAGCAATCGG
AGTTCACGATGTCTAACGAGGACTTCCCTGCGTTACCGGGCACCCAAAAC
TCGGACGGCACAACGAACGCGGTGGGGAGCGTCGCCGGAACAGGAGGCTC
CGGAGGTGCGTCCACAGAGAACCACTTGGAC
BO18093.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:53:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2161-PA | 1758 | Rga-RA | 1..765 | 17..781 | 3825 | 100 | Plus |
| CG2161-PB | 1740 | Rga-RB | 1..580 | 17..596 | 2900 | 100 | Plus |
| CG2161-PB | 1740 | Rga-RB | 581..747 | 615..781 | 835 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:59:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rga-RA | 2902 | CG2161-RA | 1047..1811 | 17..781 | 3825 | 100 | Plus |
| Rga-RC | 2514 | CG2161-RC | 745..1491 | 17..781 | 3545 | 97.6 | Plus |
| Rga-RB | 2816 | CG2161-RB | 1047..1793 | 17..781 | 3545 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:58:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5609632..5609882 | 614..364 | 1255 | 100 | Minus |
| 3R | 32079331 | 3R | 5610215..5610430 | 364..149 | 1080 | 100 | Minus |
| 3R | 32079331 | 3R | 5608853..5609019 | 781..615 | 835 | 100 | Minus |
| 3R | 32079331 | 3R | 5610488..5610620 | 149..17 | 665 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:58:59 has no hits.
BO18093.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:18:12 Download gff for
BO18093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2161-PA | 1..765 | 17..781 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:26:23 Download gff for
BO18093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rga-RA | 1047..1811 | 17..781 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:39:25 Download gff for
BO18093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rga-RA | 1047..1811 | 17..781 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:39:25 Download gff for
BO18093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5610215..5610429 | 150..364 | 100 | <- | Minus |
| 3R | 5610488..5610620 | 17..149 | 100 | | Minus |
| 3R | 5608853..5609019 | 615..781 | 100 | <- | Minus |
| 3R | 5609632..5609881 | 365..614 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:26:23 Download gff for
BO18093.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1434575..1434741 | 615..781 | 100 | <- | Minus |
| arm_3R | 1435354..1435603 | 365..614 | 100 | <- | Minus |
| arm_3R | 1435937..1436151 | 150..364 | 100 | <- | Minus |
| arm_3R | 1436210..1436342 | 17..149 | 100 | | Minus |
BO18093.complete Sequence
1789 bp assembled on 2006-12-18
GenBank Submission: FJ634315
> BO18093.complete
GAAGTTATCAGTCGACATGGCGAATTTAAATTTTCAACAACCCCCGAGAA
GTATAGCGAACGCGGCGTTAGCTGGCCGGACAACAGGCGGATTCGGTGGT
AGCTCCCTGGCTGGCCATGTGACGCCCACGTCGGGCATGTTTCAAACCGA
CTTCGCCAACTCCTATCCAGGAACGGCGAACTACGGACAGGCGCCGCAGC
AGCAGCAACAACAGCAGCAGCAGCCCCAACTGTCGCCGAACCGGAATGCC
CAGCTGTCGGTCGGCGGACCCGCCATCTCGAGCGGCAACCGCAACGCCAA
CCTCTTCGGCCAGCGTCAGTTTGTGGAGCGGCGAGCCATGCAAGGATTGG
GCAGTGGCCCCATGTCGAACATGGGCAACTTCATGCAGACGGGTCGCGGC
GGCTACGGAACGGGCGGAGGCGGTGGCGGTCCTTTGAATAACTTCCACGT
GTTCGGCGGCGGCGGTGGTAGCGACACCTCCACGCCTGCCCTGCTCGATC
CCACGGAGTTCCCCTCGCTGACGAATGCGCGCGGCCAGAACGACCAGACA
CTGCCCCAATCGAATCCGCTCCAGCCGCCGGGCAGCAAACCCTATGGTAA
TTTCTTTACCTCTTTTGGCATGGTGAAGCAACCGACGTCAGAGCAATCGG
AGTTCACGATGTCTAACGAGGACTTCCCTGCGTTACCGGGCACCCAAAAC
TCGGACGGCACAACGAACGCGGTGGGGAGCGTCGCCGGAACAGGAGGCTC
CGGAGGTGCGTCCACAGAGAACCACTTGGACGGCACGGAAAAGCCGATGA
ATTCGATAGTGGTCAGCGGATCAGCGAGCGGCAGCAGCGGTTCCAACGTC
GGCGTTGTAGGCGGCAATGGTCTCGGTGCCGTTGGCAGTGGTATAGGGGG
CTTGGCAGTAGGCGGCGGCGGAGGAGCTGGTAGCTCAGGAGGCGGAGGAG
TCGGCGGCAATGCAGCCAGCGGCGTTGTCGGCGGGTCCCATGTAGGACTG
GTGGGCAGTAACAGCGGCATTGGCGGCGTCAACAGCGTACCCAACAGCAA
TGCCATGATGGGCGTAGGCGGCGGCCTGGGGAGTGGAAGCGGCTCGTCTG
GGAGCGGAGCGGGCGGCGAGCATCTGAACGATAATTCCAGCAACGATAAA
CTTGTAAAGAGCGGCGTGCAAACTTCGCCAGATGGGAAGGTCACAAACAT
ACCAGCGACCATGGTGAACAACCAGTTCGGCATGGTTGGCCTGCTGACGT
TCATTCGGGCTGCAGAAACGGATCCCAATCTGGTGACGCTCTCCTTGGGT
ACGGATCTCACGGGTTTAGGCCTGAACCTGAACTCGCAGGAGAGCTTGCA
TACAACCTTCGCTGGCCCCTTCGTAGCACAGCCCTGCAGAGCACAAGACG
TTGAGTTCAACGTGCCACCCGAATATCTGATTAACTTTGCGATAAGAGAC
AAACTAACAGCGCCGGTACTGAAAAAGCTGCAAGAAGACCTGCTCTTTTT
CCTTTTTTACACGAACATCGGCGATATGATGCAATTGATGGCAGCTGCTG
AATTGCATAGTCGCGAGTGGCGATACCACGTGGAGGAGAAAATATGGATA
ACTCGAATTCCTGGCATTGATCAATATGAAAAAAATGGTACAAAAGAGCG
CGGCACCTTCTACTACTTTGATGCGCAAAGTTGGAAACGTTTGTCCAAGG
TTTTCCAAATAGATCCCGAGAAATTAGATAAATGTCCCAATATAAGTGCG
TTTATGAATGGACAGTCTGTAGCAAGCTTTCTAGACCAT
BO18093.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:31:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rga-RA | 1758 | CG2161-PA | 1..1755 | 17..1771 | 8775 | 100 | Plus |
| Rga-RC | 1740 | CG2161-PC | 1..1737 | 17..1771 | 8470 | 99 | Plus |
| Rga-RB | 1740 | CG2161-PB | 1..1737 | 17..1771 | 8470 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:31:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rga-RA | 2902 | CG2161-RA | 1047..2801 | 17..1771 | 8775 | 100 | Plus |
| Rga-RC | 2514 | CG2161-RC | 745..2481 | 17..1771 | 8470 | 99 | Plus |
| Rga-RB | 2816 | CG2161-RB | 1047..2783 | 17..1771 | 8470 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:31:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5608449..5609019 | 1185..615 | 2855 | 100 | Minus |
| 3R | 32079331 | 3R | 5609632..5609882 | 614..364 | 1255 | 100 | Minus |
| 3R | 32079331 | 3R | 5607376..5607592 | 1771..1555 | 1085 | 100 | Minus |
| 3R | 32079331 | 3R | 5610215..5610430 | 364..149 | 1080 | 100 | Minus |
| 3R | 32079331 | 3R | 5607953..5608158 | 1389..1184 | 1030 | 100 | Minus |
| 3R | 32079331 | 3R | 5607683..5607851 | 1555..1387 | 845 | 100 | Minus |
| 3R | 32079331 | 3R | 5610488..5610620 | 149..17 | 665 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:31:15 has no hits.
BO18093.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:12:42 Download gff for
BO18093.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rga-RA | 1..1758 | 17..1775 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:31:09 Download gff for
BO18093.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rga-RA | 1043..2804 | 17..1779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:53:51 Download gff for
BO18093.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rga-RA | 1047..2801 | 17..1773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:12:42 Download gff for
BO18093.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rga-RA | 1043..2804 | 17..1779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:21:51 Download gff for
BO18093.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rga-RA | 1047..2801 | 17..1773 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:21:51 Download gff for
BO18093.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5607374..5607592 | 1555..1773 | 99 | <- | Minus |
| 3R | 5607684..5607848 | 1390..1554 | 100 | <- | Minus |
| 3R | 5607953..5608157 | 1185..1389 | 100 | <- | Minus |
| 3R | 5608450..5609019 | 615..1184 | 100 | <- | Minus |
| 3R | 5609632..5609881 | 365..614 | 100 | <- | Minus |
| 3R | 5610215..5610429 | 150..364 | 100 | <- | Minus |
| 3R | 5610488..5610620 | 17..149 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:53:51 Download gff for
BO18093.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1433096..1433314 | 1555..1773 | 99 | <- | Minus |
| arm_3R | 1433406..1433570 | 1390..1554 | 100 | <- | Minus |
| arm_3R | 1433675..1433879 | 1185..1389 | 100 | <- | Minus |
| arm_3R | 1434172..1434741 | 615..1184 | 100 | <- | Minus |
| arm_3R | 1435354..1435603 | 365..614 | 100 | <- | Minus |
| arm_3R | 1435937..1436151 | 150..364 | 100 | <- | Minus |
| arm_3R | 1436210..1436342 | 17..149 | 100 | | Minus |
BO18093.pep Sequence
Translation from 16 to 1789
> BO18093.pep
MANLNFQQPPRSIANAALAGRTTGGFGGSSLAGHVTPTSGMFQTDFANSY
PGTANYGQAPQQQQQQQQQPQLSPNRNAQLSVGGPAISSGNRNANLFGQR
QFVERRAMQGLGSGPMSNMGNFMQTGRGGYGTGGGGGGPLNNFHVFGGGG
GSDTSTPALLDPTEFPSLTNARGQNDQTLPQSNPLQPPGSKPYGNFFTSF
GMVKQPTSEQSEFTMSNEDFPALPGTQNSDGTTNAVGSVAGTGGSGGAST
ENHLDGTEKPMNSIVVSGSASGSSGSNVGVVGGNGLGAVGSGIGGLAVGG
GGGAGSSGGGGVGGNAASGVVGGSHVGLVGSNSGIGGVNSVPNSNAMMGV
GGGLGSGSGSSGSGAGGEHLNDNSSNDKLVKSGVQTSPDGKVTNIPATMV
NNQFGMVGLLTFIRAAETDPNLVTLSLGTDLTGLGLNLNSQESLHTTFAG
PFVAQPCRAQDVEFNVPPEYLINFAIRDKLTAPVLKKLQEDLLFFLFYTN
IGDMMQLMAAAELHSREWRYHVEEKIWITRIPGIDQYEKNGTKERGTFYY
FDAQSWKRLSKVFQIDPEKLDKCPNISAFMNGQSVASFLDH
BO18093.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:30:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rga-PA | 585 | CG2161-PA | 1..585 | 1..585 | 3067 | 100 | Plus |
| Rga-PC | 579 | CG2161-PC | 1..579 | 1..585 | 3010 | 98.8 | Plus |
| Rga-PB | 579 | CG2161-PB | 1..579 | 1..585 | 3010 | 98.8 | Plus |
| CG15262-PA | 438 | CG15262-PA | 223..418 | 358..572 | 276 | 31.2 | Plus |
| caz-PB | 399 | CG3606-PB | 4..349 | 24..378 | 196 | 28.4 | Plus |
