Clone Sequence Records
BO18094.3prime Sequence
807 bp (673 high quality bases) assembled on 2006-10-13
> BO18094.3prime
ATGGTCTAGAAAGCTTGCGCCATAGGACGGTGGTCTGCTGATATGGCCAT
GTTCCAGCAGAAAATCGTAAATCTGACGCGTTTTGTTCACGTCAATTTTG
ATGAGACGTCGCGCATCGGCTAGCCGTAGATATCCGAGCTTTGCTTGCTC
CGTAACGAGTTGATTCTTGTAGTCCAAGTACGACTGCGGAACCAGACGAG
CCACACTGCACAACTTTCGCTCGCCATCATCCAGTTTGGAGTAACCAGGC
AGATCTCCAATCTCAATGGGACTAGCCTTTCGACGCGTGTTCATCACATA
TAACTTTGAGTTAATGGCCAGGGGACCAGGATCACCGCTCCTGTTGCTCT
CGTAATGCTGCACCAATTGCTGCCAGTCGAAAGCATCTGTTTGCTTCAGC
CTGCTGTAATCTCGCTGAGCCTGCTGACGTTCTTTGCTCAAGCGGGCATA
TAGTTTTGCTCCGGAAAGAGTGCGAACGCCGTGCTCCCGCAGATCGTATA
GCTTGTGCAGCTGGCTATGCAGCTCCCGATAATAACGCAGAGACTCCAAC
AGCATATCGAACTTAATGGGGTCAGGACAGATCTGCATGAAGCCCAAGAA
ACGCATGCAACTCGCATCGCTGCCAAAGGCGTGCACGTACTTGGAAATCC
AGCTGACGGTGCGATTGGGCATTATGAGACCGTGTTGCCTCATTATCTTG
TAACGACGCTGGCGCTCTCTGAGGCGATTGTTGTATGCCCGAACTAGTCC
GAGTTGCAATTCCTCTGTCACTTCGCGCTCAAACTCACTCTCAAACGCCT
CGTTGGC
BO18094.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:53:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33520-PC | 1584 | Rpb4-RC | 795..1581 | 805..19 | 3710 | 98.8 | Minus |
| CG33520-PE | 1629 | Rpb4-RE | 840..1626 | 805..19 | 3710 | 98.8 | Minus |
| CG33520-PB | 1689 | Rpb4-RB | 840..1390 | 805..255 | 2630 | 99 | Minus |
| CG33520-PA | 1644 | Rpb4-RA | 795..1345 | 805..255 | 2630 | 99 | Minus |
| CG33520-PB | 1689 | Rpb4-RB | 1449..1686 | 256..19 | 1090 | 98.3 | Minus |
| CG33520-PA | 1644 | Rpb4-RA | 1404..1641 | 256..19 | 1090 | 98.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:05:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ada2a-RG | 2158 | CG43663-RG | 902..1688 | 805..19 | 3800 | 98.9 | Minus |
| Ada2a-RE | 2385 | CG43663-RE | 947..1733 | 805..19 | 3800 | 98.9 | Minus |
| Ada2a-RC | 2340 | CG43663-RC | 902..1688 | 805..19 | 3800 | 98.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:05:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18253853..18254319 | 255..721 | 2275 | 99.1 | Plus |
| 3R | 32079331 | 3R | 18253557..18253794 | 19..256 | 1130 | 98.3 | Plus |
| 3R | 32079331 | 3R | 18254375..18254461 | 719..805 | 420 | 98.9 | Plus |
Blast to na_te.dros performed on 2015-02-13 16:05:09 has no hits.
BO18094.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:18:13 Download gff for
BO18094.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33520-PE | 838..1629 | 18..807 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:40:13 Download gff for
BO18094.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ada2a-RC | 900..1688 | 19..807 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:21:46 Download gff for
BO18094.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ada2a-RC | 900..1688 | 19..807 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:21:46 Download gff for
BO18094.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18253557..18253792 | 19..254 | 98 | <- | Plus |
| 3R | 18253853..18254316 | 255..718 | 99 | <- | Plus |
| 3R | 18254375..18254463 | 719..807 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:40:13 Download gff for
BO18094.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14079279..14079514 | 19..254 | 98 | <- | Plus |
| arm_3R | 14079575..14080038 | 255..718 | 99 | <- | Plus |
| arm_3R | 14080097..14080185 | 719..807 | 97 | | Plus |
BO18094.5prime Sequence
825 bp (777 high quality bases) assembled on 2006-10-13
> BO18094.5prime
GAAGTTATCAGTCGACATGTCTTTTATGAACCCCGTGGATATGGTGGATG
AGGACGCCGCCGACCTGCAGTTTCCCAAAGTTGAGCCACTGGGGCCACAG
GTTAAGCGGTTCATCCATGCACATCAGAATGAACACACCAGGAACTCCAT
GGTTTTGTATAATCCGCACACGTTGCACAGGTACTTGGAGGAGATGGAGG
AAAAGACGCGGGACCAGAATAGCAGTGTTCCATCGGCTACAAAGGATGCC
AATCGATGTGCCACATGTCGCTGCAGTCTCACAGAGCCGTACATTAAGTG
CTCCGAGTGCCTCGACACCCTGCTCTGCCTGCAATGTTTCTCACGTGGAA
AGGAGGCCTTTTCTCACCGCAATAACCACGCTTACATCATAGTCCGCGAC
AACATACAGGTGTTCGCCGATGAGCCACACTGGACGGCACGGGACGAGCG
CATACTGCTGAAAACACTTCGCACCCACGGCTATGGCAACTGGGAGGCGG
TCTCCCAGGCTCTGGACCAGCGCCACGAACCCGCAGAAGTGCGACGTCAC
TACCACGATTGCTACTTTGGCGGGATATTCGAGCGGCTCCTTAATCTGAA
GCATGCGAGGGACAGCTATGTGCCCGAACGAATGCCGTATGTCTTCAAAA
TGCGCAGCTTGGATCCACCACGTCATGACGACATCGCCTCCATGCAGTTC
AGACTGAGCGCAGGCTACCGCTGTGCAAGAGGAGACTTCGATACTCCGTA
CGACACCTCAGCAGAGAGTCTGCTATCTATTATGGTGGATCATAGGGGCA
GGGATGACGACAACGAGGCGTCTGA
BO18094.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:54:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33520-PC | 1584 | Rpb4-RC | 1..809 | 17..825 | 3895 | 99.2 | Plus |
| CG33520-PA | 1644 | Rpb4-RA | 1..809 | 17..825 | 3895 | 99.2 | Plus |
| CG33520-PB | 1689 | Rpb4-RB | 108..854 | 79..825 | 3585 | 99.1 | Plus |
| CG33520-PE | 1629 | Rpb4-RE | 108..854 | 79..825 | 3585 | 99.1 | Plus |
| CG33520-PB | 1689 | Rpb4-RB | 1..65 | 17..81 | 325 | 100 | Plus |
| CG33520-PE | 1629 | Rpb4-RE | 1..65 | 17..81 | 325 | 100 | Plus |
| CG33520-PD | 453 | Rpb4-RD | 1..64 | 17..80 | 320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:17:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ada2a-RG | 2158 | CG43663-RG | 108..916 | 17..825 | 3955 | 99.3 | Plus |
| Ada2a-RC | 2340 | CG43663-RC | 108..916 | 17..825 | 3955 | 99.3 | Plus |
| Ada2a-RA | 2400 | CG43663-RA | 108..916 | 17..825 | 3955 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:17:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18254447..18255193 | 825..79 | 3645 | 99.2 | Minus |
| 3R | 32079331 | 3R | 18255317..18255380 | 80..17 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:17:09 has no hits.
BO18094.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:18:13 Download gff for
BO18094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33520-PC | 1..808 | 17..824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:34:25 Download gff for
BO18094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ada2a-RA | 93..915 | 3..824 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:27:14 Download gff for
BO18094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ada2a-RA | 93..915 | 3..824 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:27:14 Download gff for
BO18094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18254448..18255191 | 81..824 | 99 | <- | Minus |
| 3R | 18255317..18255395 | 3..80 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:34:25 Download gff for
BO18094.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14080170..14080913 | 81..824 | 99 | <- | Minus |
| arm_3R | 14081039..14081117 | 3..80 | 93 | | Minus |
BO18094.complete Sequence
1615 bp assembled on 2007-10-25
GenBank Submission: FJ634316
> BO18094.complete
GAAGTTATCAGTCGACATGTCTTTTATGAACCCCGTGGATATGGTGGATG
AGGACGCCGCCGACCTGCAGTTTCCCAAAGTTGAGCCACTGGGGCCACAG
GTTAAGCGGTTCATCCATGCACATCAGAATGAACACACCAGGAACTCCAT
GGTTTTGTATAATCCGCACACGTTGCACAGGTACTTGGAGGAGATGGAGG
AAAAGACGCGGGACCAGAATAGCAGTGTTCCATCGGCTACAAAGGATGCC
AATCGATGTGCCACATGTCGCTGCAGTCTCACAGAGCCGTACATTAAGTG
CTCCGAGTGCCTCGACACCCTGCTCTGCCTGCAATGTTTCTCACGTGGAA
AGGAGGCCTTTTCTCACCGCAATAACCACGCTTACATCATAGTCCGCGAC
AACATACAGGTGTTCGCCGATGAGCCACACTGGACGGCACGGGACGAGCG
CATACTGCTGAAAACACTTCGCACCCACGGCTATGGCAACTGGGAGGCGG
TCTCCCAGGCTCTGGACCAGCGCCACGAACCCGCAGAAGTGCGACGTCAC
TACCACGATTGCTACTTTGGCGGGATATTCGAGCGGCTCCTTAATCTGAA
GCATGCGAGGGACAGCTATGTGCCCGAACGAATGCCGTATGTCTTCAAAA
TGCGCAGCTTGGATCCACCACGTCATGACGACATCGCCTCCATGCAGTTC
AGACTGAGCGCAGGCTACCGCTGTGCAAGAGGAGACTTCGATACTCCGTA
CGACACCTCAGCAGAGAGTCTGCTATCTATTATGGTGGATCATAGGGGCA
GGGATGACGACAACGAGGCGTCTGAGAGTGAGTTTGAGCGCGAAGTGACA
GAGGAATTGCAACTCGGACTAGTTCGGGCATACAACAATCGCCTCAGAGA
GCGCCAGCGTCGTTACAAGATAATGAGGCAACACGGTCTCATAATGCCCA
ATCGCACCGTCAGCTGGATTTCCAAGTACGTGCACGCCTTTGGCAGCGAT
GCGAGTTGCATGCGTTTCTTGGGCTTCATGCAGATCTGTCCTGACCCCAT
TAAGTTCGATATGCTGTTGGAGTCTCTGCGTTATTATCGGGAGCTGCATA
GCCAGCTGCACAAGCTATACGATCTGCGGGAGCACGGCGTTCGCACTCTT
TCCGGAGCAAAACTATATGCCCGCTTGAGCAAAGAACGTCAGCAGGCTCA
GCGAGATTACAGCAGGCTGAAGCAAACAGATGCTTTCGACTGGCAGCAAT
TGGTGCAGCATTACGAGAGCAACAGGAGCGGTGATCCTGGTCCCCTGGCC
ATTAACTCAAAGTTATATGTGATGAACACGCGTCGAAAGGCTAGTCCCAT
TGAGATTGGAGATCTGCCTGGTTACTCCAAACTGGATGATGGCGAGCGAA
AGTTGTGCAGTGTGGCTCGTCTGGTTCCGCAGTCGTACTTGGACTACAAG
AATCAACTCGTTACGGAGCAAGCAAAGCTCGGATATCTACGGCTAGCCGA
TGCGCGACGTCTCATCAAAATTGACGTGAACAAAACGCGTCAGATTTACG
ATTTTCTGCTGGAACATGGCCATATCAGCAGACCACCGTCCTATGGCGCA
AGCTTTCTAGACCAT
BO18094.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:35:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ada2a-RG | 1584 | CG43663-PG | 1..1581 | 17..1597 | 7695 | 99.1 | Plus |
| Ada2a-RC | 1584 | CG43663-PC | 1..1581 | 17..1597 | 7695 | 99.1 | Plus |
| Ada2a-RE | 1629 | CG43663-PE | 108..1626 | 79..1597 | 7385 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:35:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ada2a-RG | 2158 | CG43663-RG | 108..1688 | 17..1597 | 7695 | 99.1 | Plus |
| Ada2a-RC | 2340 | CG43663-RC | 108..1688 | 17..1597 | 7695 | 99.1 | Plus |
| Ada2a-RE | 2385 | CG43663-RE | 215..1733 | 79..1597 | 7385 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:35:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18254375..18255193 | 897..79 | 4005 | 99.3 | Minus |
| 3R | 32079331 | 3R | 18253853..18254319 | 1361..895 | 2275 | 99.1 | Minus |
| 3R | 32079331 | 3R | 18253557..18253794 | 1597..1360 | 1130 | 98.3 | Minus |
| 3R | 32079331 | 3R | 18255317..18255380 | 80..17 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:35:14 has no hits.
BO18094.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:03:43 Download gff for
BO18094.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb4-RE | 1..63 | 17..80 | 98 | -> | Plus |
| Rpb4-RE | 110..1629 | 81..1598 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:17:31 Download gff for
BO18094.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb4-RE | 70..147 | 3..80 | 92 | -> | Plus |
| Rpb4-RE | 194..1710 | 81..1597 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:32:38 Download gff for
BO18094.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ada2a-RC | 108..1688 | 17..1599 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:48:19 Download gff for
BO18094.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpb4-RE | 85..147 | 17..80 | 98 | -> | Plus |
| Rpb4-RE | 194..1710 | 81..1599 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:03:55 Download gff for
BO18094.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ada2a-RC | 108..1688 | 17..1599 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:03:55 Download gff for
BO18094.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18253555..18253792 | 1362..1599 | 97 | <- | Minus |
| 3R | 18253853..18254316 | 898..1361 | 99 | <- | Minus |
| 3R | 18254375..18255191 | 81..897 | 99 | <- | Minus |
| 3R | 18255317..18255380 | 17..80 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:32:38 Download gff for
BO18094.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 14079277..14079514 | 1362..1599 | 97 | <- | Minus |
| arm_3R | 14079575..14080038 | 898..1361 | 99 | <- | Minus |
| arm_3R | 14080097..14080913 | 81..897 | 99 | <- | Minus |
| arm_3R | 14081039..14081102 | 17..80 | 100 | | Minus |
BO18094.pep Sequence
Translation from 16 to 1615
> BO18094.pep
MSFMNPVDMVDEDAADLQFPKVEPLGPQVKRFIHAHQNEHTRNSMVLYNP
HTLHRYLEEMEEKTRDQNSSVPSATKDANRCATCRCSLTEPYIKCSECLD
TLLCLQCFSRGKEAFSHRNNHAYIIVRDNIQVFADEPHWTARDERILLKT
LRTHGYGNWEAVSQALDQRHEPAEVRRHYHDCYFGGIFERLLNLKHARDS
YVPERMPYVFKMRSLDPPRHDDIASMQFRLSAGYRCARGDFDTPYDTSAE
SLLSIMVDHRGRDDDNEASESEFEREVTEELQLGLVRAYNNRLRERQRRY
KIMRQHGLIMPNRTVSWISKYVHAFGSDASCMRFLGFMQICPDPIKFDML
LESLRYYRELHSQLHKLYDLREHGVRTLSGAKLYARLSKERQQAQRDYSR
LKQTDAFDWQQLVQHYESNRSGDPGPLAINSKLYVMNTRRKASPIEIGDL
PGYSKLDDGERKLCSVARLVPQSYLDYKNQLVTEQAKLGYLRLADARRLI
KIDVNKTRQIYDFLLEHGHISRPPSYGASFLDH
BO18094.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:27:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ada2a-PG | 527 | CG43663-PG | 1..527 | 1..527 | 2810 | 100 | Plus |
| Ada2a-PC | 527 | CG43663-PC | 1..527 | 1..527 | 2810 | 100 | Plus |
| Ada2a-PE | 542 | CG43663-PE | 1..542 | 1..527 | 2784 | 97.2 | Plus |
| Ada2a-PA | 547 | CG43663-PA | 1..547 | 1..527 | 2779 | 96.3 | Plus |
| Ada2a-PB | 562 | CG43663-PB | 1..562 | 1..527 | 2753 | 93.8 | Plus |
