Clone Sequence Records
BO18096.3prime Sequence
797 bp (730 high quality bases) assembled on 2006-10-13
> BO18096.3prime
ATGGTCTAGAAAGCTTGCATTGCTGTAGCAGGTCTTGCGCACTCCTGCCA
GAATGTTGCTAATCTCATCATCTTTGCGCTGCTGCTGCTCGAAGAGCATC
TCACCGACTCCGACTCCGACGCCCACTCCCACGCCCACGCCCACCATGCC
GGGTGCGGGTCCAAAGTGATGATGATGGTGCTGCTGCATGCTAATTGCTG
CCGAATTGGAGGTCACCGTCTGGTTGGGTGGCACTGACAGGGAGGGCGGA
GCCGAGTGGGATGCCTGCTGATGGTGGACGGGCGCTTGGTTCTGTGGCTG
ACTCTGGGCCATTCCCTCGTATCCGCCATAGTTGCCGTAGTGCAGGTAAC
CACTCTGAATGGGCTGCGCTCCGTAGGCGCCCGATGTCGTCTGCTGGAAC
GGCACGGCCAGCTGGAGAGGAAAGGCGGCCAGCGAGGTGGGCGGATACGG
AAGTTGGGTGTAGTAGCTAGCTGCCGTTGCAGGCAGCATGGCGTTACTGT
AGGCCTCCGCCTCGTAGTCGTCGTAGTTCTGATTCGTGTCCGGATACTTA
AGGCACTTCTGGCCGCTCGCCGAATCCGATGTGGTCTCCTTGTGCTCCAC
CGCCGACGTTGAGTAGTCCATATCGTTGCTCTGATAGCGCAGGAAGTCCT
CGTATTGCATCCCATAGGCATTGGCGCTGGGCAGATACTCATTGCCGGAC
AACTCGTTCATGCTGAGCCTGAGATTTCCGCAGTTATCCGCCATGGAGAC
CGTGTAGCTGCTCATCTCGCTGGTTGGCATGGTGCCGCCGGAGCTTG
BO18096.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:54:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8404-PA | 2355 | Sox15-RA | 1574..2352 | 797..19 | 3895 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:59:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sox15-RA | 3651 | CG8404-RA | 2647..3425 | 797..19 | 3895 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:59:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14201616..14202394 | 19..797 | 3895 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:59:41 has no hits.
BO18096.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:18:14 Download gff for
BO18096.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8404-PA | 1574..2355 | 16..797 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:26:30 Download gff for
BO18096.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sox15-RA | 2647..3430 | 12..797 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:39:40 Download gff for
BO18096.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sox15-RA | 2647..3430 | 12..797 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:39:40 Download gff for
BO18096.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14201609..14202394 | 12..797 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:26:30 Download gff for
BO18096.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10089114..10089899 | 12..797 | 99 | | Plus |
BO18096.5prime Sequence
746 bp (718 high quality bases) assembled on 2006-10-13
> BO18096.5prime
GAAGTTATCCGTCGACATGGAACCCTCATATGATCACGAACATCCACATC
ATCTGCTAACAAATTACAATTCGAAAAAGTATCCGCACGTCTCGCGCACT
CCGGAGTACAGTCACTCCACCGGCAGCGATTATCCGGAGCACGGTGGCTA
TCTGACGGATGGACGCCTGATGCACGAGAGCAACAGCGATGCCGGGATCT
ACCACGTGCGCCAGGGAAGCGAGCACTCCTCGCCCAGTCTGCACTCGCCA
GCCATACAGAGCTCCGGATACGAGAATGAGCACCTGAACGAGGCGGTTCT
GGCCGCGCACAGCCACAGTCACTCGCCCATGCCGATGGTGTCCAGTGCCT
ATGTGGGCGGAGGAACTGCCTCCGGATCGCTGATTAACAGCAATATTCCT
CTGCTCGGTGGCGGCGGTAATTCCGTACTGAACAAATTTCTATCGCATCC
GCACGCTGGCATGGTGGGCGGTGGAACCGGACAGATGGAGGACTGCACAT
CGCACTCGCCAATTGAAGCGGCGTCCATGTGGAGCTACGACTACAAGGGC
GACCTGTGCGCGCCCAATTGTGGCTATCTGGAGCGACACAAGCCGCTGCC
CGCCGACCTTAAGTATCGGCCCGGCGGAACCCAGTCAAAAAGTGCCAAAG
AATCGCGCATCCGGCGGCCGATGAACGCCTTCATGGTCTGGGCCAAGATC
GAGCGCAAGAAGCTGGCCGACAAGAATCCCGATCTGCATAATGCCG
BO18096.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:54:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8404-PA | 2355 | Sox15-RA | 1..730 | 17..746 | 3625 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:14:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sox15-RA | 3651 | CG8404-RA | 1074..1803 | 17..746 | 3635 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:14:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14203376..14204052 | 746..70 | 3370 | 99.9 | Minus |
| 2R | 25286936 | 2R | 14211288..14211340 | 69..17 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:14:26 has no hits.
BO18096.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:18:15 Download gff for
BO18096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8404-PA | 1..730 | 17..746 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:51:24 Download gff for
BO18096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sox15-RA | 1074..1803 | 17..746 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:43 Download gff for
BO18096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sox15-RA | 1074..1803 | 17..746 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:43 Download gff for
BO18096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14203376..14204052 | 70..746 | 99 | <- | Minus |
| 2R | 14211288..14211340 | 17..69 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:51:24 Download gff for
BO18096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10090881..10091557 | 70..746 | 99 | <- | Minus |
| arm_2R | 10098793..10098845 | 17..69 | 100 | | Minus |
BO18096.complete Sequence
2386 bp assembled on 2008-08-14
GenBank Submission: FJ634317
> BO18096.complete
GAAGTTATCCGTCGACATGGAACCCTCATATGATCACGAACATCCACATC
ATCTGCTAACAAATTACAATTCGAAAAAGTATCCGCACGTCTCGCGCACT
CCGGAGTACAGTCACTCCACCGGCAGCGATTATCCGGAGCACGGTGGCTA
TCTGACGGATGGACGCCTGATGCACGAGAGCAACAGCGATGCCGGGATCT
ACCACGTGCGCCAGGGAAGCGAGCACTCCTCGCCCAGTCTGCACTCGCCA
GCCATACAGAGCTCCGGATACGAGAATGAGCACCTGAACGAGGCGGTTCT
GGCCGCGCACAGCCACAGTCACTCGCCCATGCCGATGGTGTCCAGTGCCT
ATGTGGGCGGAGGAACTGCCTCCGGATCGCTGATTAACAGCAATATTCCT
CTGCTCGGTGGCGGCGGTAATTCCGTACTGAACAAATTTCTATCGCATCC
GCACGCTGGCATGGTGGGCGGTGGAACCGGACAGATGGAGGACTGCACAT
CGCACTCGCCAATTGAAGCGGCGTCCATGTGGAGCTACGACTACAAGGGC
GACCTGTGCGCGCCCAATTGTGGCTATCTGGAGCGACACAAGCCGCTGCC
CGCCGACCTTAAGTATCGGCCCGGCGGAACCCAGTCAAAAAGTGCCAAAG
AATCGCGCATCCGGCGGCCGATGAACGCCTTCATGGTCTGGGCCAAGATC
GAGCGCAAGAAGCTGGCCGACGAGAATCCCGATCTGCATAATGCCGACCT
CAGCAAGATGTTGGGAAAAAAATGGCGATCGCTGACGCCGCAAGATCGCA
GACCCTACGTGGAGGAGGCGGAGCGTCTGCGGGTGATTCACATGACGGAG
CATCCGAACTACAAGTACCGACCCCGACGACGCAAGCAGTCCAAGCTGCG
GGCCATGCAGCCGGGCGGCAAGGAGCAGAGCGAGAGTTCACCCAATCCGG
GCACTGGTGGATCCAAGTCGAATCCCAAGCTGGCCACACCACCGTTGGCC
ACCGCATCATCCAGCTATACAACGCCCACCGACGAAAGCACCTGCAATTC
CACGAACCAGAATCACGGACAATCAACTCCGGGTGGCCTGTACGAGCAAC
CGCTGAAGCCCACGTACTCGCCCAGTTCCGTGGACTGCTACAGCAATGCG
GACAGCACGGAACAGATCGAGTCACTGGCCGCCAACTGTCCGCCCGCCCT
GCTCAATGAATCGTCGCCCACGGGCGGTGGCTACGACAACTCGCTGTTGC
TCAAGAAGTTAACCAAGCCGTCGCCGAGTCGTGCGGCCAAGTCGCGCCAG
GAGAAGCTGGCCAAGTCCGAGGAGAAGAACAAGGGGTCACAATCGCAGGG
ACAGTCTCAGCAAGGTATATATGCTGCCACCTATCCGCTAGCACCCACCT
CCGTGGCCGTGGTGGCCGCCAGGGGTATGTACGTGACGTGCAACAATCGG
GGATTGCTGGATCATGGTCACTCCGTCAAGGGCACATTCTATCCACCAGT
ATCCGTTTCGGAAGATGACAATAGCACCTCAATGCGGAACAGCATTAGTG
CTCTGCAGCAGCACTGTAATGTGGTCACAAGTACACCCTCAAGCTCCGGC
GGCACCATGCCAACCAGCGAGATGAGCAGCTACACGGTCTCCATGGCGGA
TAACTGCGGAAATCTCAGGCTCAGCATGAACGAGTTGTCCGGCAATGAGT
ATCTGCCCAGCGCCAATGCCTATGGGATGCAATACGAGGACTTCCTGCGC
TATCAGAGCAACGATATGGACTACTCAACGTCGGCGGTGGAGCACAAGGA
GACCACATCGGATTCGGCGAGCGGCCAGAAGTGCCTTAAGTATCCGGACA
CGAATCAGAACTACGACGACTACGAGGCGGAGGCCTACAGTAACGCCATG
CTGCCTGCAACGGCAGCTAGCTACTACACCCAACTTCCGTATCCGCCCAC
CTCGCTGGCCGCCTTTCCTCTCCAGCTGGCCGTGCCGTTCCAGCAGACGA
CATCGGGCGCCTACGGAGCGCAGCCCATTCAGAGTGGTTACCTGCACTAC
GGCAACTATGGCGGATACGAGGGAATGGCCCAGAGTCAGCCACAGAACCA
AGCGCCCGTCCACCATCAGCAGGCATCCCACTCGGCTCCGCCCTCCCTGT
CAGTGCCACCCAACCAGACGGTGACCTCCAATTCGGCAGCAATTAGCATG
CAGCAGCACCATCATCATCACTTTGGACCCGCACCCGGCATGGTGGGCGT
GGGCGTGGGAGTGGGCGTCGGAGTCGGAGTCGGTGAGATGCTCTTCGAGC
AGCAGCAGCGCAAAGATGATGAGATTAGCAACATTCTGGCAGGAGTGCGC
AAGACCTGCTACAGCAATGCAAGCTTTCTAGACCAT
BO18096.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:07:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sox15-RA | 2355 | CG8404-PA | 1..2352 | 17..2368 | 11760 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:07:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sox15-RA | 3651 | CG8404-RA | 1074..3425 | 17..2368 | 11760 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:07:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14201616..14203220 | 2368..764 | 8025 | 100 | Minus |
| 2R | 25286936 | 2R | 14203357..14204052 | 765..70 | 3480 | 100 | Minus |
| 2R | 25286936 | 2R | 14211288..14211340 | 69..17 | 265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:07:02 has no hits.
BO18096.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:38:02 Download gff for
BO18096.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sox15-RA | 1070..3426 | 17..2375 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:25 Download gff for
BO18096.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sox15-RA | 1074..3425 | 17..2370 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:03:04 Download gff for
BO18096.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sox15-RA | 1070..3421 | 17..2370 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:11:02 Download gff for
BO18096.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sox15-RA | 1074..3425 | 17..2370 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:11:02 Download gff for
BO18096.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14201612..14203219 | 765..2370 | 99 | <- | Minus |
| 2R | 14203358..14204052 | 70..764 | 100 | <- | Minus |
| 2R | 14211288..14211340 | 17..69 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:25 Download gff for
BO18096.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10089117..10090724 | 765..2370 | 99 | <- | Minus |
| arm_2R | 10090863..10091557 | 70..764 | 100 | <- | Minus |
| arm_2R | 10098793..10098845 | 17..69 | 100 | | Minus |
BO18096.pep Sequence
Translation from 16 to 2386
> BO18096.pep
MEPSYDHEHPHHLLTNYNSKKYPHVSRTPEYSHSTGSDYPEHGGYLTDGR
LMHESNSDAGIYHVRQGSEHSSPSLHSPAIQSSGYENEHLNEAVLAAHSH
SHSPMPMVSSAYVGGGTASGSLINSNIPLLGGGGNSVLNKFLSHPHAGMV
GGGTGQMEDCTSHSPIEAASMWSYDYKGDLCAPNCGYLERHKPLPADLKY
RPGGTQSKSAKESRIRRPMNAFMVWAKIERKKLADENPDLHNADLSKMLG
KKWRSLTPQDRRPYVEEAERLRVIHMTEHPNYKYRPRRRKQSKLRAMQPG
GKEQSESSPNPGTGGSKSNPKLATPPLATASSSYTTPTDESTCNSTNQNH
GQSTPGGLYEQPLKPTYSPSSVDCYSNADSTEQIESLAANCPPALLNESS
PTGGGYDNSLLLKKLTKPSPSRAAKSRQEKLAKSEEKNKGSQSQGQSQQG
IYAATYPLAPTSVAVVAARGMYVTCNNRGLLDHGHSVKGTFYPPVSVSED
DNSTSMRNSISALQQHCNVVTSTPSSSGGTMPTSEMSSYTVSMADNCGNL
RLSMNELSGNEYLPSANAYGMQYEDFLRYQSNDMDYSTSAVEHKETTSDS
ASGQKCLKYPDTNQNYDDYEAEAYSNAMLPATAASYYTQLPYPPTSLAAF
PLQLAVPFQQTTSGAYGAQPIQSGYLHYGNYGGYEGMAQSQPQNQAPVHH
QQASHSAPPSLSVPPNQTVTSNSAAISMQQHHHHHFGPAPGMVGVGVGVG
VGVGVGEMLFEQQQRKDDEISNILAGVRKTCYSNASFLDH
BO18096.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:24:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sox15-PA | 784 | CG8404-PA | 1..784 | 1..784 | 4182 | 100 | Plus |
| Sox21b-PB | 571 | CG32139-PB | 78..465 | 3..449 | 334 | 24.3 | Plus |
| Sox21b-PA | 571 | CG32139-PA | 78..465 | 3..449 | 334 | 24.3 | Plus |
| Sox21b-PC | 587 | CG32139-PC | 78..465 | 3..449 | 334 | 24.3 | Plus |
| D-PD | 382 | CG5893-PD | 138..260 | 211..326 | 322 | 45.5 | Plus |
