Clone Sequence Records
BO18104.3prime Sequence
810 bp (724 high quality bases) assembled on 2006-10-13
> BO18104.3prime
ATGGTCTAGAAAGCTTGCAACGTTAACTATGTCGACGTTAAGGCTTTTGG
ACAAGAAAGTCAGTATATCGGTGGCTTCCTCGATTCTCTTCGATGTCGGC
TTGCCAGCGCCATGGCCCGCCTTCTGGTAGACGCGCAACAGAACGGGATT
TTTCTGGAATTCCGAGTCGCGAACAGCTTCCTGGAGGGCCGCAATGAACT
TGAGCGAATGCAAAGGGCTGACACGATCGTCGTGGTCGGCGGTCAGGATC
AAAGTCGATGGGTATTCCGTTTCGGCGCCCTTCGGAGTGTGCACATTATG
CAGCGGCGAGAACTTGTACAGGTTGTCAAAGTGCTCCTTCTCCGATGGGT
TTCCATAATCCGAGCACCAAGCGTGGCCAATGGTGAACTTGTGGAAGCGC
AACATATCCATGACACCAACTTGAGCCACAGCAGCTCCAAACAAATCCGG
ACGTTGGTTGATACACGAGCCGACCAAAAGGCCTCCGTTGGAGCCACCTT
GGATGGCCAAACGATCCTTGGTCGTGTACTTATTCTCGATCAAGTACTCG
GCAGCTGCTTGGAAGTCATCGAACACGTTCTGCTTGTTCAGCAGGCGACC
GCCGTTGTGCCACTTCTCGCCATATTCGCCACCACCTCGCAGATTCGGAT
AGGCGAGCACACCATCGAATGTGTCGATGAACATAAGCCCAGAGAGTCCG
AAGGAAGGCAGCATGCTGATGTTGAAACCTCCGTATCCGTAAAGCAGACA
TGGTCGCGGCTCAACACTATCACGTTTTTTCCTAATTATGAACATGGGAA
CCTTGGGTGC
BO18104.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:55:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5355-PA | 2271 | CG5355-RA | 1481..2268 | 806..19 | 3915 | 99.8 | Minus |
CG2528-PA | 2049 | CG2528-RA | 1783..1826 | 429..386 | 145 | 93.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:00:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5355-RA | 2404 | CG5355-RA | 1514..2301 | 806..19 | 3925 | 99.9 | Minus |
CG2528-RE | 2342 | CG2528-RE | 1525..2107 | 741..159 | 605 | 74.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:00:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10410640..10411037 | 19..416 | 1990 | 100 | Plus |
2L | 23513712 | 2L | 10411091..10411364 | 416..689 | 1370 | 100 | Plus |
2L | 23513712 | 2L | 10411430..10411548 | 688..806 | 580 | 99.2 | Plus |
2L | 23513712 | 2L | 21990839..21991352 | 171..684 | 560 | 73.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:00:07 has no hits.
BO18104.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:18:18 Download gff for
BO18104.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5355-PA | 1478..2271 | 16..810 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:26:32 Download gff for
BO18104.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5355-RA | 1511..2301 | 19..810 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:39:47 Download gff for
BO18104.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5355-RA | 1511..2301 | 19..810 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:39:47 Download gff for
BO18104.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10411431..10411551 | 689..810 | 98 | | Plus |
2L | 10410640..10411036 | 19..415 | 100 | <- | Plus |
2L | 10411091..10411363 | 416..688 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:26:32 Download gff for
BO18104.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10410640..10411036 | 19..415 | 100 | <- | Plus |
arm_2L | 10411091..10411363 | 416..688 | 100 | <- | Plus |
arm_2L | 10411431..10411551 | 689..810 | 98 | | Plus |
BO18104.5prime Sequence
818 bp (735 high quality bases) assembled on 2006-10-13
> BO18104.5prime
GAAGTTATCAGTCGACATGCATACCATTTTTCGAGGACCGCTGCTCTACC
GCCGAATTTGTCAAATAGTTGTACCCAAAACGCTGCCCAGAAATTACATT
CATCGAGAATTGCCTTCAAATCTTACCAGAGCCATGCCAAGTACTTTGTC
CGCTAAGCTCGCGTATCCAGTTGCTCGGAAGGATGAAAGCGTGGCAGAGG
ACTTTCATGGCACCCAGATCAAGGATGTGTACCGCTGGCTCGAAGATCCG
GACTCCACGGAAACCGAGGAATTCGTGAATGCCCAGAACAGCATAAGCCG
GCCTTTCCTCGAGAATGGAGAGGAGTGGAAGAAACTGAACACGAAGCTTA
CCAAGCTGTGGAACTATCCCAAATACGGATGTCCCATGCGTTATGGCAAC
TATTACTATTACTTTATGAACACTGGCCTGCAAAACCAGAGCGTCATGTA
CCAGCAGAAATCGCTGGGCGACGAGAGTGAAAGCAAGGTGTTCCTGGATC
CGAACACCCTGTCCGAGGACGGTACCATCGCCCTGACTCAGAAGGCCTTC
TCCGAGGATGGCAAGTACATGGCCTACGGCCTGAGTGAAAGTGGATCCGA
TTGGATCAAGATTCTCATTCGAGATGCCGAAACGGGCAAGGATCTGAGCG
AGGTCCTTGAAAAGGTCAAGTTCTCGGAGATTTCGTGGACAAAAGACAAT
AAGGGATTCTTTTATGGTAGATACCCTGACCAAGATGGAAAAACCGATGG
ATCTGAGACCAAACAGAATGAGAATCAAAAGTTGTACTATCACCGGGTGG
GTGAGAGCCAGGATAAAG
BO18104.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:55:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5355-PA | 2271 | CG5355-RA | 1..802 | 17..818 | 4010 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 01:43:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5355-RA | 2404 | CG5355-RA | 34..835 | 17..818 | 4010 | 100 | Plus |
CG2528-RE | 2342 | CG2528-RE | 205..410 | 236..441 | 205 | 73.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 01:43:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10412624..10413219 | 718..123 | 2980 | 100 | Minus |
2L | 23513712 | 2L | 10413325..10413430 | 122..17 | 530 | 100 | Minus |
2L | 23513712 | 2L | 10412468..10412567 | 818..719 | 500 | 100 | Minus |
2L | 23513712 | 2L | 21992524..21992729 | 441..236 | 205 | 73.3 | Minus |
Blast to na_te.dros performed on 2015-02-05 01:43:45 has no hits.
BO18104.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:18:18 Download gff for
BO18104.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5355-PA | 1..802 | 17..818 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:04:52 Download gff for
BO18104.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5355-RA | 34..835 | 17..818 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:59:51 Download gff for
BO18104.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5355-RA | 34..835 | 17..818 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 02:59:51 Download gff for
BO18104.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10412468..10412567 | 719..818 | 100 | <- | Minus |
2L | 10412624..10413219 | 123..718 | 100 | <- | Minus |
2L | 10413325..10413430 | 17..122 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:04:52 Download gff for
BO18104.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10412468..10412567 | 719..818 | 100 | <- | Minus |
arm_2L | 10412624..10413219 | 123..718 | 100 | <- | Minus |
arm_2L | 10413325..10413430 | 17..122 | 100 | | Minus |
BO18104.complete Sequence
2302 bp assembled on 2007-03-23
GenBank Submission: FJ634318
> BO18104.complete
GAAGTTATCAGTCGACATGCATACCATTTTTCGAGGACCGCTGCTCTACC
GCCGAATTTGTCAAATAGTTGTACCCAAAACGCTGCCCAGAAATTACATT
CATCGAGAATTGCCTTCAAATCTTACCAGAGCCATGCCAAGTACTTTGTC
CGCTAAGCTCGCGTATCCAGTTGCTCGGAAGGATGAAAGCGTGGCAGAGG
ACTTTCATGGCACCCAGATCAAGGATGTGTACCGCTGGCTCGAAGATCCG
GACTCCACGGAAACCGAGGAATTCGTGAATGCCCAGAACAGCATAAGCCG
GCCTTTCCTCGAGAATGGAGAGGAGTGGAAGAAACTGAACACGAAGCTTA
CCAAGCTGTGGAACTATCCCAAATACGGATGTCCCATGCGTTATGGCAAC
TATTACTATTACTTTATGAACACTGGCCTGCAAAACCAGAGCGTCATGTA
CCAGCAGAAATCGCTGGGCGACGAGAGTGAAAGCAAGGTGTTCCTGGATC
CGAACACCCTGTCCGAGGACGGTACCATCGCCCTGACTCAGAAGGCCTTC
TCCGAGGATGGCAAGTACATGGCCTACGGCCTGAGTGAAAGTGGATCCGA
TTGGATCAAGATTCTCATTCGAGATGCCGAAACGGGCAAGGATCTGAGCG
AGGTCCTTGAAAAGGTCAAGTTCTCGGAGATTTCGTGGACAAAAGACAAT
AAGGGATTCTTTTATGGTAGATACCCTGACCAAGATGGAAAAACCGATGG
ATCTGAGACCAAACAGAATGAGAATCAAAAGTTGTACTATCACCGGGTGG
GTGAGAGCCAGGATAAAGACACACTGGTGGTCGAATTTCCGGAAGAGCCT
TCGTGGCGCATCCAATCCACCGTCTCGGATTGTGGAAAATACCTGATTCT
GGCCATTGTTAAAGATTGCCGTGACAACATTGTGTTCTATGCTGATCTTA
CGCCAGGTGCGGAAATAACTTCCAAACTGAATGTCAAGAAAATTGTGGAA
AAATTCGAGGCGGACTACGATTACATTACCAATGAAGGCTCGAAGATATT
CTTCCGTACAAATAAGAATGCACCAAATTACCAAGTTATTGCCATAGACT
TCAATAATTCAGCGGAGGACAAATGGGAAACGCTTATAGCCGAGCACAAG
TCGGATGTTTTGGACTGGGTTAAGTGCGTTGATAATGATAAACTGCTCGT
TTGTTACATCAGGGATGTGAAGAGCGTTTTGCAAGTGAATTCCCTAAAGG
ATGGCACCCTACTGCGCGAATTCGACTTGGATATCGGCACCATTGTAGGC
ACATCGGGAGAGAAGAAATATTCTGAAATATTCTACAACTTCTCGTCCTT
TTTGAATCCCGGCTCCATTTATCGATATGATTTCAAGACACCTGACAAGT
CGCCATCAGTATTCCGCGAAATCAAACTGAATTTGGAAGGATTCCGTCGC
GAGGATTACGCCGTTGAGCAGATATTCTACAAGAGCAAGGATGGCACCAA
GGTTCCCATGTTCATAATTAGGAAAAAACGTGATAGTGTTGAGCCGCGAC
CATGTCTGCTTTACGGATACGGAGGCTTCAACATCAGCATGCTGCCTTCC
TTCGGACTCTCTGGGCTTATGTTCATCGACACATTCGATGGTGTGCTCGC
CTATCCGAATCTGCGAGGTGGTGGCGAATATGGCGAGAAGTGGCACAACG
GCGGTCGCCTGCTGAACAAGCAGAACGTGTTCGATGACTTCCAAGCAGCT
GCCGAGTACTTGATCGAGAATAAGTACACGACCAAGGATCGTTTGGCCAT
CCAAGGTGGCTCCAACGGAGGCCTTTTGGTCGGCTCGTGTATCAACCAAC
GTCCGGATTTGTTTGGAGCTGCTGTGGCTCAAGTTGGTGTCATGGATATG
TTGCGCTTCCACAAGTTCACCATTGGCCACGCTTGGTGCTCGGATTATGG
AAACCCATCGGAGAAGGAGCACTTTGACAACCTGTACAAGTTCTCGCCGC
TGCATAATGTGCACACTCCGAAGGGCGCCGAAACGGAATACCCATCGACT
TTGATCCTGACCGCCGACCACGACGATCGTGTCAGCCCTTTGCATTCGCT
CAAGTTCATTGCGGCCCTCCAGGAAGCTGTTCGCGACTCGGAATTCCAGA
AAAATCCCGTTCTGTTGCGCGTCTACCAGAAGGCGGGCCATGGCGCTGGC
AAGCCGACATCGAAGAGAATCGAGGAAGCCACCGATATACTGACTTTCTT
GTCCAAAAGCCTTAACGTCGACATAGTTAACGTTGCAAGCTTTCTAGACC
AT
BO18104.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:23:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5355-RA | 2271 | CG5355-PA | 1..2268 | 17..2284 | 11340 | 100 | Plus |
CG2528-RE | 2196 | CG2528-PE | 1528..2053 | 1619..2144 | 575 | 74 | Plus |
CG2528-RE | 2196 | CG2528-PE | 900..1092 | 991..1183 | 260 | 75.6 | Plus |
CG2528-RE | 2196 | CG2528-PE | 151..356 | 236..441 | 205 | 73.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:23:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5355-RA | 2404 | CG5355-RA | 34..2301 | 17..2284 | 11340 | 100 | Plus |
CG2528-RE | 2342 | CG2528-RE | 1582..2107 | 1619..2144 | 575 | 74 | Plus |
CG2528-RE | 2342 | CG2528-RE | 954..1146 | 991..1183 | 260 | 75.6 | Plus |
CG2528-RE | 2342 | CG2528-RE | 205..410 | 236..441 | 205 | 73.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:23:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10412624..10413219 | 718..123 | 2980 | 100 | Minus |
2L | 23513712 | 2L | 10410640..10411037 | 2284..1887 | 1990 | 100 | Minus |
2L | 23513712 | 2L | 10411430..10411824 | 1615..1221 | 1975 | 100 | Minus |
2L | 23513712 | 2L | 10411091..10411364 | 1887..1614 | 1370 | 100 | Minus |
2L | 23513712 | 2L | 10412205..10412364 | 1021..862 | 800 | 100 | Minus |
2L | 23513712 | 2L | 10412425..10412567 | 861..719 | 715 | 100 | Minus |
2L | 23513712 | 2L | 10412022..10412142 | 1142..1022 | 605 | 100 | Minus |
2L | 23513712 | 2L | 21990839..21991352 | 2132..1619 | 560 | 73.9 | Minus |
2L | 23513712 | 2L | 10413325..10413430 | 122..17 | 530 | 100 | Minus |
2L | 23513712 | 2L | 10411881..10411961 | 1222..1142 | 405 | 100 | Minus |
2L | 23513712 | 2L | 21991788..21991980 | 1183..991 | 260 | 75.6 | Minus |
2L | 23513712 | 2L | 21992524..21992729 | 441..236 | 205 | 73.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:23:54 has no hits.
BO18104.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:09:36 Download gff for
BO18104.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5355-RA | 1..2271 | 17..2287 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:26:46 Download gff for
BO18104.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5355-RA | 143..2410 | 17..2284 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:23:51 Download gff for
BO18104.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5355-RA | 34..2301 | 17..2286 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:09:36 Download gff for
BO18104.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5355-RA | 143..2410 | 17..2284 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:09 Download gff for
BO18104.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5355-RA | 34..2301 | 17..2286 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:09 Download gff for
BO18104.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10410637..10411036 | 1888..2286 | 99 | <- | Minus |
2L | 10411091..10411363 | 1615..1887 | 100 | <- | Minus |
2L | 10411431..10411822 | 1223..1614 | 100 | <- | Minus |
2L | 10411881..10411961 | 1142..1222 | 100 | <- | Minus |
2L | 10412023..10412142 | 1022..1141 | 100 | <- | Minus |
2L | 10412205..10412364 | 862..1021 | 100 | <- | Minus |
2L | 10412425..10412567 | 719..861 | 100 | <- | Minus |
2L | 10412624..10413219 | 123..718 | 100 | <- | Minus |
2L | 10413325..10413430 | 17..122 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:23:51 Download gff for
BO18104.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10410637..10411036 | 1888..2286 | 99 | <- | Minus |
arm_2L | 10412023..10412142 | 1022..1141 | 100 | <- | Minus |
arm_2L | 10412205..10412364 | 862..1021 | 100 | <- | Minus |
arm_2L | 10411091..10411363 | 1615..1887 | 100 | <- | Minus |
arm_2L | 10411431..10411822 | 1223..1614 | 100 | <- | Minus |
arm_2L | 10411881..10411961 | 1142..1222 | 100 | <- | Minus |
arm_2L | 10412425..10412567 | 719..861 | 100 | <- | Minus |
arm_2L | 10412624..10413219 | 123..718 | 100 | <- | Minus |
arm_2L | 10413325..10413430 | 17..122 | 100 | | Minus |
BO18104.pep Sequence
Translation from 16 to 2302
> BO18104.pep
MHTIFRGPLLYRRICQIVVPKTLPRNYIHRELPSNLTRAMPSTLSAKLAY
PVARKDESVAEDFHGTQIKDVYRWLEDPDSTETEEFVNAQNSISRPFLEN
GEEWKKLNTKLTKLWNYPKYGCPMRYGNYYYYFMNTGLQNQSVMYQQKSL
GDESESKVFLDPNTLSEDGTIALTQKAFSEDGKYMAYGLSESGSDWIKIL
IRDAETGKDLSEVLEKVKFSEISWTKDNKGFFYGRYPDQDGKTDGSETKQ
NENQKLYYHRVGESQDKDTLVVEFPEEPSWRIQSTVSDCGKYLILAIVKD
CRDNIVFYADLTPGAEITSKLNVKKIVEKFEADYDYITNEGSKIFFRTNK
NAPNYQVIAIDFNNSAEDKWETLIAEHKSDVLDWVKCVDNDKLLVCYIRD
VKSVLQVNSLKDGTLLREFDLDIGTIVGTSGEKKYSEIFYNFSSFLNPGS
IYRYDFKTPDKSPSVFREIKLNLEGFRREDYAVEQIFYKSKDGTKVPMFI
IRKKRDSVEPRPCLLYGYGGFNISMLPSFGLSGLMFIDTFDGVLAYPNLR
GGGEYGEKWHNGGRLLNKQNVFDDFQAAAEYLIENKYTTKDRLAIQGGSN
GGLLVGSCINQRPDLFGAAVAQVGVMDMLRFHKFTIGHAWCSDYGNPSEK
EHFDNLYKFSPLHNVHTPKGAETEYPSTLILTADHDDRVSPLHSLKFIAA
LQEAVRDSEFQKNPVLLRVYQKAGHGAGKPTSKRIEEATDILTFLSKSLN
VDIVNVASFLDH
BO18104.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:43:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5355-PA | 756 | CG5355-PA | 1..756 | 1..756 | 4005 | 100 | Plus |
CG2528-PE | 731 | CG2528-PE | 11..731 | 33..756 | 2697 | 68.5 | Plus |