Clone BO18104 Report

Search the DGRC for BO18104

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:181
Well:4
Vector:pDNR-Dual
Associated Gene/TranscriptCG5355-RA
Protein status:BO18104.pep: validated full length
Sequenced Size:2302

Clone Sequence Records

BO18104.3prime Sequence

810 bp (724 high quality bases) assembled on 2006-10-13

> BO18104.3prime
ATGGTCTAGAAAGCTTGCAACGTTAACTATGTCGACGTTAAGGCTTTTGG
ACAAGAAAGTCAGTATATCGGTGGCTTCCTCGATTCTCTTCGATGTCGGC
TTGCCAGCGCCATGGCCCGCCTTCTGGTAGACGCGCAACAGAACGGGATT
TTTCTGGAATTCCGAGTCGCGAACAGCTTCCTGGAGGGCCGCAATGAACT
TGAGCGAATGCAAAGGGCTGACACGATCGTCGTGGTCGGCGGTCAGGATC
AAAGTCGATGGGTATTCCGTTTCGGCGCCCTTCGGAGTGTGCACATTATG
CAGCGGCGAGAACTTGTACAGGTTGTCAAAGTGCTCCTTCTCCGATGGGT
TTCCATAATCCGAGCACCAAGCGTGGCCAATGGTGAACTTGTGGAAGCGC
AACATATCCATGACACCAACTTGAGCCACAGCAGCTCCAAACAAATCCGG
ACGTTGGTTGATACACGAGCCGACCAAAAGGCCTCCGTTGGAGCCACCTT
GGATGGCCAAACGATCCTTGGTCGTGTACTTATTCTCGATCAAGTACTCG
GCAGCTGCTTGGAAGTCATCGAACACGTTCTGCTTGTTCAGCAGGCGACC
GCCGTTGTGCCACTTCTCGCCATATTCGCCACCACCTCGCAGATTCGGAT
AGGCGAGCACACCATCGAATGTGTCGATGAACATAAGCCCAGAGAGTCCG
AAGGAAGGCAGCATGCTGATGTTGAAACCTCCGTATCCGTAAAGCAGACA
TGGTCGCGGCTCAACACTATCACGTTTTTTCCTAATTATGAACATGGGAA
CCTTGGGTGC

BO18104.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:55:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG5355-PA 2271 CG5355-RA 1481..2268 806..19 3915 99.8 Minus
CG2528-PA 2049 CG2528-RA 1783..1826 429..386 145 93.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:00:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG5355-RA 2404 CG5355-RA 1514..2301 806..19 3925 99.9 Minus
CG2528-RE 2342 CG2528-RE 1525..2107 741..159 605 74.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:00:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10410640..10411037 19..416 1990 100 Plus
2L 23513712 2L 10411091..10411364 416..689 1370 100 Plus
2L 23513712 2L 10411430..10411548 688..806 580 99.2 Plus
2L 23513712 2L 21990839..21991352 171..684 560 73.9 Plus
Blast to na_te.dros performed on 2015-02-10 16:00:07 has no hits.

BO18104.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:18:18 Download gff for BO18104.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5355-PA 1478..2271 16..810 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:26:32 Download gff for BO18104.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5355-RA 1511..2301 19..810 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:39:47 Download gff for BO18104.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5355-RA 1511..2301 19..810 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:39:47 Download gff for BO18104.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10411431..10411551 689..810 98   Plus
2L 10410640..10411036 19..415 100 <- Plus
2L 10411091..10411363 416..688 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:26:32 Download gff for BO18104.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10410640..10411036 19..415 100 <- Plus
arm_2L 10411091..10411363 416..688 100 <- Plus
arm_2L 10411431..10411551 689..810 98   Plus

BO18104.5prime Sequence

818 bp (735 high quality bases) assembled on 2006-10-13

> BO18104.5prime
GAAGTTATCAGTCGACATGCATACCATTTTTCGAGGACCGCTGCTCTACC
GCCGAATTTGTCAAATAGTTGTACCCAAAACGCTGCCCAGAAATTACATT
CATCGAGAATTGCCTTCAAATCTTACCAGAGCCATGCCAAGTACTTTGTC
CGCTAAGCTCGCGTATCCAGTTGCTCGGAAGGATGAAAGCGTGGCAGAGG
ACTTTCATGGCACCCAGATCAAGGATGTGTACCGCTGGCTCGAAGATCCG
GACTCCACGGAAACCGAGGAATTCGTGAATGCCCAGAACAGCATAAGCCG
GCCTTTCCTCGAGAATGGAGAGGAGTGGAAGAAACTGAACACGAAGCTTA
CCAAGCTGTGGAACTATCCCAAATACGGATGTCCCATGCGTTATGGCAAC
TATTACTATTACTTTATGAACACTGGCCTGCAAAACCAGAGCGTCATGTA
CCAGCAGAAATCGCTGGGCGACGAGAGTGAAAGCAAGGTGTTCCTGGATC
CGAACACCCTGTCCGAGGACGGTACCATCGCCCTGACTCAGAAGGCCTTC
TCCGAGGATGGCAAGTACATGGCCTACGGCCTGAGTGAAAGTGGATCCGA
TTGGATCAAGATTCTCATTCGAGATGCCGAAACGGGCAAGGATCTGAGCG
AGGTCCTTGAAAAGGTCAAGTTCTCGGAGATTTCGTGGACAAAAGACAAT
AAGGGATTCTTTTATGGTAGATACCCTGACCAAGATGGAAAAACCGATGG
ATCTGAGACCAAACAGAATGAGAATCAAAAGTTGTACTATCACCGGGTGG
GTGAGAGCCAGGATAAAG

BO18104.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:55:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG5355-PA 2271 CG5355-RA 1..802 17..818 4010 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-05 01:43:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG5355-RA 2404 CG5355-RA 34..835 17..818 4010 100 Plus
CG2528-RE 2342 CG2528-RE 205..410 236..441 205 73.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-05 01:43:40
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10412624..10413219 718..123 2980 100 Minus
2L 23513712 2L 10413325..10413430 122..17 530 100 Minus
2L 23513712 2L 10412468..10412567 818..719 500 100 Minus
2L 23513712 2L 21992524..21992729 441..236 205 73.3 Minus
Blast to na_te.dros performed on 2015-02-05 01:43:45 has no hits.

BO18104.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:18:18 Download gff for BO18104.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5355-PA 1..802 17..818 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 22:04:52 Download gff for BO18104.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5355-RA 34..835 17..818 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-05 02:59:51 Download gff for BO18104.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5355-RA 34..835 17..818 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-05 02:59:51 Download gff for BO18104.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10412468..10412567 719..818 100 <- Minus
2L 10412624..10413219 123..718 100 <- Minus
2L 10413325..10413430 17..122 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 22:04:52 Download gff for BO18104.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10412468..10412567 719..818 100 <- Minus
arm_2L 10412624..10413219 123..718 100 <- Minus
arm_2L 10413325..10413430 17..122 100   Minus

BO18104.complete Sequence

2302 bp assembled on 2007-03-23

GenBank Submission: FJ634318

> BO18104.complete
GAAGTTATCAGTCGACATGCATACCATTTTTCGAGGACCGCTGCTCTACC
GCCGAATTTGTCAAATAGTTGTACCCAAAACGCTGCCCAGAAATTACATT
CATCGAGAATTGCCTTCAAATCTTACCAGAGCCATGCCAAGTACTTTGTC
CGCTAAGCTCGCGTATCCAGTTGCTCGGAAGGATGAAAGCGTGGCAGAGG
ACTTTCATGGCACCCAGATCAAGGATGTGTACCGCTGGCTCGAAGATCCG
GACTCCACGGAAACCGAGGAATTCGTGAATGCCCAGAACAGCATAAGCCG
GCCTTTCCTCGAGAATGGAGAGGAGTGGAAGAAACTGAACACGAAGCTTA
CCAAGCTGTGGAACTATCCCAAATACGGATGTCCCATGCGTTATGGCAAC
TATTACTATTACTTTATGAACACTGGCCTGCAAAACCAGAGCGTCATGTA
CCAGCAGAAATCGCTGGGCGACGAGAGTGAAAGCAAGGTGTTCCTGGATC
CGAACACCCTGTCCGAGGACGGTACCATCGCCCTGACTCAGAAGGCCTTC
TCCGAGGATGGCAAGTACATGGCCTACGGCCTGAGTGAAAGTGGATCCGA
TTGGATCAAGATTCTCATTCGAGATGCCGAAACGGGCAAGGATCTGAGCG
AGGTCCTTGAAAAGGTCAAGTTCTCGGAGATTTCGTGGACAAAAGACAAT
AAGGGATTCTTTTATGGTAGATACCCTGACCAAGATGGAAAAACCGATGG
ATCTGAGACCAAACAGAATGAGAATCAAAAGTTGTACTATCACCGGGTGG
GTGAGAGCCAGGATAAAGACACACTGGTGGTCGAATTTCCGGAAGAGCCT
TCGTGGCGCATCCAATCCACCGTCTCGGATTGTGGAAAATACCTGATTCT
GGCCATTGTTAAAGATTGCCGTGACAACATTGTGTTCTATGCTGATCTTA
CGCCAGGTGCGGAAATAACTTCCAAACTGAATGTCAAGAAAATTGTGGAA
AAATTCGAGGCGGACTACGATTACATTACCAATGAAGGCTCGAAGATATT
CTTCCGTACAAATAAGAATGCACCAAATTACCAAGTTATTGCCATAGACT
TCAATAATTCAGCGGAGGACAAATGGGAAACGCTTATAGCCGAGCACAAG
TCGGATGTTTTGGACTGGGTTAAGTGCGTTGATAATGATAAACTGCTCGT
TTGTTACATCAGGGATGTGAAGAGCGTTTTGCAAGTGAATTCCCTAAAGG
ATGGCACCCTACTGCGCGAATTCGACTTGGATATCGGCACCATTGTAGGC
ACATCGGGAGAGAAGAAATATTCTGAAATATTCTACAACTTCTCGTCCTT
TTTGAATCCCGGCTCCATTTATCGATATGATTTCAAGACACCTGACAAGT
CGCCATCAGTATTCCGCGAAATCAAACTGAATTTGGAAGGATTCCGTCGC
GAGGATTACGCCGTTGAGCAGATATTCTACAAGAGCAAGGATGGCACCAA
GGTTCCCATGTTCATAATTAGGAAAAAACGTGATAGTGTTGAGCCGCGAC
CATGTCTGCTTTACGGATACGGAGGCTTCAACATCAGCATGCTGCCTTCC
TTCGGACTCTCTGGGCTTATGTTCATCGACACATTCGATGGTGTGCTCGC
CTATCCGAATCTGCGAGGTGGTGGCGAATATGGCGAGAAGTGGCACAACG
GCGGTCGCCTGCTGAACAAGCAGAACGTGTTCGATGACTTCCAAGCAGCT
GCCGAGTACTTGATCGAGAATAAGTACACGACCAAGGATCGTTTGGCCAT
CCAAGGTGGCTCCAACGGAGGCCTTTTGGTCGGCTCGTGTATCAACCAAC
GTCCGGATTTGTTTGGAGCTGCTGTGGCTCAAGTTGGTGTCATGGATATG
TTGCGCTTCCACAAGTTCACCATTGGCCACGCTTGGTGCTCGGATTATGG
AAACCCATCGGAGAAGGAGCACTTTGACAACCTGTACAAGTTCTCGCCGC
TGCATAATGTGCACACTCCGAAGGGCGCCGAAACGGAATACCCATCGACT
TTGATCCTGACCGCCGACCACGACGATCGTGTCAGCCCTTTGCATTCGCT
CAAGTTCATTGCGGCCCTCCAGGAAGCTGTTCGCGACTCGGAATTCCAGA
AAAATCCCGTTCTGTTGCGCGTCTACCAGAAGGCGGGCCATGGCGCTGGC
AAGCCGACATCGAAGAGAATCGAGGAAGCCACCGATATACTGACTTTCTT
GTCCAAAAGCCTTAACGTCGACATAGTTAACGTTGCAAGCTTTCTAGACC
AT

BO18104.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:23:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG5355-RA 2271 CG5355-PA 1..2268 17..2284 11340 100 Plus
CG2528-RE 2196 CG2528-PE 1528..2053 1619..2144 575 74 Plus
CG2528-RE 2196 CG2528-PE 900..1092 991..1183 260 75.6 Plus
CG2528-RE 2196 CG2528-PE 151..356 236..441 205 73.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:23:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG5355-RA 2404 CG5355-RA 34..2301 17..2284 11340 100 Plus
CG2528-RE 2342 CG2528-RE 1582..2107 1619..2144 575 74 Plus
CG2528-RE 2342 CG2528-RE 954..1146 991..1183 260 75.6 Plus
CG2528-RE 2342 CG2528-RE 205..410 236..441 205 73.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:23:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10412624..10413219 718..123 2980 100 Minus
2L 23513712 2L 10410640..10411037 2284..1887 1990 100 Minus
2L 23513712 2L 10411430..10411824 1615..1221 1975 100 Minus
2L 23513712 2L 10411091..10411364 1887..1614 1370 100 Minus
2L 23513712 2L 10412205..10412364 1021..862 800 100 Minus
2L 23513712 2L 10412425..10412567 861..719 715 100 Minus
2L 23513712 2L 10412022..10412142 1142..1022 605 100 Minus
2L 23513712 2L 21990839..21991352 2132..1619 560 73.9 Minus
2L 23513712 2L 10413325..10413430 122..17 530 100 Minus
2L 23513712 2L 10411881..10411961 1222..1142 405 100 Minus
2L 23513712 2L 21991788..21991980 1183..991 260 75.6 Minus
2L 23513712 2L 21992524..21992729 441..236 205 73.3 Minus
Blast to na_te.dros performed on 2014-11-28 00:23:54 has no hits.

BO18104.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:09:36 Download gff for BO18104.complete
Subject Subject Range Query Range Percent Splice Strand
CG5355-RA 1..2271 17..2287 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:26:46 Download gff for BO18104.complete
Subject Subject Range Query Range Percent Splice Strand
CG5355-RA 143..2410 17..2284 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:23:51 Download gff for BO18104.complete
Subject Subject Range Query Range Percent Splice Strand
CG5355-RA 34..2301 17..2286 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:09:36 Download gff for BO18104.complete
Subject Subject Range Query Range Percent Splice Strand
CG5355-RA 143..2410 17..2284 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:09 Download gff for BO18104.complete
Subject Subject Range Query Range Percent Splice Strand
CG5355-RA 34..2301 17..2286 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:09 Download gff for BO18104.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10410637..10411036 1888..2286 99 <- Minus
2L 10411091..10411363 1615..1887 100 <- Minus
2L 10411431..10411822 1223..1614 100 <- Minus
2L 10411881..10411961 1142..1222 100 <- Minus
2L 10412023..10412142 1022..1141 100 <- Minus
2L 10412205..10412364 862..1021 100 <- Minus
2L 10412425..10412567 719..861 100 <- Minus
2L 10412624..10413219 123..718 100 <- Minus
2L 10413325..10413430 17..122 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:23:51 Download gff for BO18104.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10410637..10411036 1888..2286 99 <- Minus
arm_2L 10412023..10412142 1022..1141 100 <- Minus
arm_2L 10412205..10412364 862..1021 100 <- Minus
arm_2L 10411091..10411363 1615..1887 100 <- Minus
arm_2L 10411431..10411822 1223..1614 100 <- Minus
arm_2L 10411881..10411961 1142..1222 100 <- Minus
arm_2L 10412425..10412567 719..861 100 <- Minus
arm_2L 10412624..10413219 123..718 100 <- Minus
arm_2L 10413325..10413430 17..122 100   Minus

BO18104.pep Sequence

Translation from 16 to 2302

> BO18104.pep
MHTIFRGPLLYRRICQIVVPKTLPRNYIHRELPSNLTRAMPSTLSAKLAY
PVARKDESVAEDFHGTQIKDVYRWLEDPDSTETEEFVNAQNSISRPFLEN
GEEWKKLNTKLTKLWNYPKYGCPMRYGNYYYYFMNTGLQNQSVMYQQKSL
GDESESKVFLDPNTLSEDGTIALTQKAFSEDGKYMAYGLSESGSDWIKIL
IRDAETGKDLSEVLEKVKFSEISWTKDNKGFFYGRYPDQDGKTDGSETKQ
NENQKLYYHRVGESQDKDTLVVEFPEEPSWRIQSTVSDCGKYLILAIVKD
CRDNIVFYADLTPGAEITSKLNVKKIVEKFEADYDYITNEGSKIFFRTNK
NAPNYQVIAIDFNNSAEDKWETLIAEHKSDVLDWVKCVDNDKLLVCYIRD
VKSVLQVNSLKDGTLLREFDLDIGTIVGTSGEKKYSEIFYNFSSFLNPGS
IYRYDFKTPDKSPSVFREIKLNLEGFRREDYAVEQIFYKSKDGTKVPMFI
IRKKRDSVEPRPCLLYGYGGFNISMLPSFGLSGLMFIDTFDGVLAYPNLR
GGGEYGEKWHNGGRLLNKQNVFDDFQAAAEYLIENKYTTKDRLAIQGGSN
GGLLVGSCINQRPDLFGAAVAQVGVMDMLRFHKFTIGHAWCSDYGNPSEK
EHFDNLYKFSPLHNVHTPKGAETEYPSTLILTADHDDRVSPLHSLKFIAA
LQEAVRDSEFQKNPVLLRVYQKAGHGAGKPTSKRIEEATDILTFLSKSLN
VDIVNVASFLDH

BO18104.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:43:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG5355-PA 756 CG5355-PA 1..756 1..756 4005 100 Plus
CG2528-PE 731 CG2528-PE 11..731 33..756 2697 68.5 Plus