Clone Sequence Records
BO18106.3prime Sequence
779 bp (750 high quality bases) assembled on 2006-10-13
> BO18106.3prime
ATGGTCTAGAAAGCTTGCGTTACGCAGCATGGTGACCAGGGCCACCATCA
AAAGGCTGATGGCGCTGAAGGCGTTGACCATGGCGCTTCCACTACGATAG
TTGGCCAGATAGCTGCGGAAAACGCCCAGCTTGGCCGTAGCCCACTCCAA
GTTCTCCTTAACGGTTGCCTCGGCGGCGGTCAAAGTGGCCTGCGAGCTGC
CGAACTTGGCGCCATTAGCCTTGTTGAAGTTCTCCAGATCAGTTAACTGC
TGATTTGTGGTGAAACGGGCGGCGATATTGGAAATCACCGTGGCCACAGC
GGAGTAGCCGCCCATGGCCTCAGCCAATTCCTCGTATTTCTGAGTGACCA
GTGCAAACACCGGACTGACATTCTCGTTGTTCTCCGTGTAGAGAGTGGCC
AGCACGGATGACTTGTCCTGTCGTCGAATCTCATCGCTGATGATCAGATC
GAACACCTTCTCGATTAGAGACTGGGTCTTGACGCAACCGAATGAGTTCT
GCAGCAGGGTCTCCTCGGTGGCCACGGTCTCGTTCTTGAACTTGTTGTAA
AGAGCCTGGAACTCGGCCTCACCACCTTCACGCAGACCCACGCAGTAGAC
AGTGGCGCGTATGTTCTTGGGCACGGTGGCCAACGATTGGAAGTAGCCCT
GGGCCTGGCTGATGCAATCGGAGCTGCCATAGCGACAGGCCCAGGAGAGG
ATCTTAGTGCGTAGGTAAATGTCCAAGGCTGTATCATTCGATGCTTCATT
GAAGCCCAGCTGATTGTAGGCCTTGTTGG
BO18106.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:55:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31198-PA | 2823 | CG31198-RA | 2060..2820 | 779..19 | 3805 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:51:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31198-RA | 3019 | CG31198-RA | 2150..2910 | 779..19 | 3805 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:50:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21756831..21757293 | 779..317 | 2315 | 100 | Minus |
| 3R | 32079331 | 3R | 21757352..21757649 | 316..19 | 1490 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:50:58 has no hits.
BO18106.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:18:19 Download gff for
BO18106.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31198-PA | 2060..2823 | 15..779 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:42:56 Download gff for
BO18106.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31198-RA | 2150..2915 | 13..779 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:53:12 Download gff for
BO18106.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31198-RA | 2150..2915 | 13..779 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:53:12 Download gff for
BO18106.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21756831..21757293 | 317..779 | 100 | -> | Minus |
| 3R | 21757352..21757654 | 13..316 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:42:56 Download gff for
BO18106.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17582553..17583015 | 317..779 | 100 | -> | Minus |
| arm_3R | 17583074..17583376 | 13..316 | 99 | | Minus |
BO18106.5prime Sequence
704 bp (703 high quality bases) assembled on 2006-10-13
> BO18106.5prime
GAAGTTATCAGTCGACATGTTTGCCCCGCGAGTGGCTGTTCTCCTGGTGG
CCTGTGTGTCCTTGGCCTCGGCAGGAACTCGGCAACTGTCTGTGGATGTC
CAGCCGCCGGCGACGCTCGCCACCGAGCTAAATGAATACCGCCTGGCCGA
GCACATCACGCCGGTTAACTACAACATTACGCTGCGTCCCTATTTGCTGG
AGACCGATGGCAACAAGAGGTTCACCTTCGATGGCGAGGTTTGGATCGAG
GTGATTTCCAACCAGACCACCAACGACATCTATCTGCACTCGAAAAACCT
CACATATTCGGTCAGGGAATACTGGCAAAAGCCAACCACCGAAGTGGCCA
ATCCTACGGTCATCCAAATTAGTGCCACCAATACAACGAACTATGATACG
GATATTGTAAAGCTGACGGCGTCAACTGCTTTGACCGCCAATACGACATA
TATACTGCATTTCGTGTACACCGGTCTGATGGAGGACGATATGCACGGTT
TCTATCGCAGCTCCTATGTGGACGATAACAATGTTACCAAGTGGCTGGGA
TCCACCCAATTCCAAACCCATCACGCTCGTCGCGCCTTCCCCAGCTTTGA
TGAGCCCCAGTTCAAGGCCACCTTCGATGTCACGCTGAAGCGACACAGGA
CCTTCAACTCGGTCAGTAACACCCGTCTGATCTCATCGTATCCCAGCACT
GAAG
BO18106.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:56:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31198-PA | 2823 | CG31198-RA | 1..688 | 17..704 | 3440 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:46:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31198-RA | 3019 | CG31198-RA | 91..778 | 17..704 | 3440 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:46:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21754569..21755256 | 17..704 | 3440 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:46:41 has no hits.
BO18106.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:18:20 Download gff for
BO18106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31198-PA | 1..688 | 17..704 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:15:40 Download gff for
BO18106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31198-RA | 89..778 | 14..704 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:42:22 Download gff for
BO18106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31198-RA | 89..778 | 14..704 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:42:22 Download gff for
BO18106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21754567..21755256 | 14..704 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:15:40 Download gff for
BO18106.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17580289..17580978 | 14..704 | 99 | | Plus |
BO18106.complete Sequence
2854 bp assembled on 2007-03-23
GenBank Submission: FJ634320
> BO18106.complete
GAAGTTATCAGTCGACATGTTTGCCCCGCGAGTGGCTGTTCTCCTGGTGG
CCTGTGTGTCCTTGGCCTCGGCAGGAACTCGGCAACTGTCTGTGGATGTC
CAGCCGCCGGCGACGCTCGCCACCGAGCTAAATGAATACCGCCTGGCCGA
GCACATCACGCCGGTTAACTACAACATTACGCTGCGTCCCTATTTGCTGG
AGACCGATGGCAACAAGAGGTTCACCTTCGATGGCGAGGTTTGGATCGAG
GTGATTTCCAACCAGACCACCAACGACATCTATCTGCACTCGAAAAACCT
CACATATTCGGTCAGGGAATACTGGCAAAAGCCAACCACCGAAGTGGCCA
ATCCTACGGTCATCCAAATTAGTGCCACCAATACAACGAACTATGATACG
GATATTGTAAAGCTGACGGCGTCAACTGCTTTGACCGCCAATACGACATA
TATACTGCATTTCGTGTACACCGGTCTGATGGAGGACGATATGCACGGTT
TCTATCGCAGCTCCTATGTGGACGATAACAATGTTACCAAGTGGCTGGGA
TCCACCCAATTCCAAACCCATCACGCTCGTCGCGCCTTCCCCAGCTTTGA
TGAGCCCCAGTTCAAGGCCACCTTCGATGTCACGCTGAAGCGACACAGGA
CCTTCAACTCGGTCAGTAACACCCGTCTGATCTCATCGTATCCCAGCACT
GAAGAAGGTATTTTCTCGGACGTGTACAAGACGACGCCCAAAATGTCCAC
CTATCTGCTGGCTTTCATAATTTCCGAGTTCGTGGCCCGTAAGGATGACG
ATTTCGGAGTTTACGCACGTCCCGAGTACTATGCTCAGACCCAGTACCCC
TACAATGTGGGTATCCAGATTTTGGAGGAGATGGGCCAGTACCTGGATAA
GGACTACTACTCTATGGGCAACGACAAGATGGATATGGCCGCCATTCCGG
ATTTCTCGGCCGGAGCAATGGAGAACTGGGGTCTGTTGACCTACAGGGAG
CGTTCCCTGCTGGTGGACGAGTCGGCTACTACCTTGGCCTCCCGCCAGTC
CATTGCCGCCGTGGTGGCTCACGAACAGGCGCACATGTGGTTCGGCGATC
TGGTCACCTGCAAGTGGTGGAGCTACACCTGGCTTAACGAGGGATTCGCT
CGCTATTTCCAATACTTCGGCACCGCCATGGTCGAGGACAAATGGGAGCT
GGAGAAGCAGTTTGTGGTTGACCAGGTGCAGTCGGTCATGGCCATGGACT
CGACCAATGCCACCAATCCGCTGAGCGATGAGAACACCTACACGCCCGCC
CATCTGAGCCGCATGTTTAACAGCATCTCCTACAACAAGGGAGCCACCTT
CATCCGTATGATCAAGCACACCATGGGCGAGCAACAATTCCAGAAGTCCC
TGCAGGAATACCTGAAGAAATACGAGTATCAGTCGTCTTTGCCTGAATAT
CTCTTGGGAGCCTGGCAAGCCAATTGGCCCAACTCCAGTTACAATGAAAG
CTCCAAAGATATATTCAAGAGCTTCACCGAGCAGGTGGGCTATCCACTGA
TCAATGTAACTGTTGGCAACAGTCAGGTCAGCTTCACGCAGAAGCGTTTC
CTGCTGAAGGAGAGCGATGGATCCGACTCATCTTTGAAATATACTGTGCC
CATTTCCTACACTACCAGTGAGACAAATAACTTTTTGAACACCACGCCAA
AGTTTATTCTGAAACCCAACGTAACTACGACGGTTCAATTCAACTCAACA
ATAAAATGGATTGTGGTCAATATTCAGCAGACCGGATATTACCGTGTCAC
CTACTCCGACGACAATTGGCATGCCATCCACCACGCTCTGATCACAGCCA
ACTGGGGAGGAATTCACGAGAACAATCGCGCCCAGATCGTGGATGATCTG
TTCAATCTGGCCAGGGCTGGATATGTTACCTACAACCTTACCTTGGATGT
GATCGAGTATTTGCAGACGGAGACCAACTACATCCCCTGGACATCCGCCT
TCAACGGCTTCAACTACTTGACTATCCGCCTCGGAAACGACACGGCCGAT
TTCAATTACTATATCCAGACCCTGACCAACAAGGCCTACAATCAGCTGGG
CTTCAATGAAGCATCGAATGATACAGCCTTGGACATTTACCTACGCACTA
AGATCCTCTCCTGGGCCTGTCGCTATGGCAGCTCCGATTGCATCAGCCAG
GCCCAGGGCTACTTCCAATCGTTGGCCACCGTGCCCAAGAACATACGCGC
CACTGTCTACTGCGTGGGTCTGCGTGAAGGTGGTGAGGCCGAGTTCCAGG
CTCTTTACAACAAGTTCAAGAACGAGACCGTGGCCACCGAGGAGACCCTG
CTGCAGAACTCATTCGGTTGCGTCAAGACCCAGTCTCTAATCGAGAAGGT
GTTCGATCTGATCATCAGCGATGAGATTCGACGACAGGACAAGTCATCCG
TGCTGGCCACTCTCTACACGGAGAACAACGAGAATGTCAGTCCGGTGTTT
GCACTGGTCACTCAGAAATACGAGGAATTGGCTGAGGCCATGGGCGGCTA
CTCCGCTGTGGCCACGGTGATTTCCAATATCGCCGCCCGTTTCACCACAA
ATCAGCAGTTAACTGATCTGGAGAACTTCAACAAGGCTAATGGCGCCAAG
TTCGGCAGCTCGCAGGCCACTTTGACCGCCGCCGAGGCAACCGTTAAGGA
GAACTTGGAGTGGGCTACGGCCAAGCTGGGCGTTTTCCGCAGCTATCTGG
CCAACTATCGTAGTGGAAGCGCCATGGTCAACGCCTTCAGCGCCATCAGC
CTTTTGATGGTGGCCCTGGTCACCATGCTGCGTAACGCAAGCTTTCTAGA
CCAT
BO18106.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:12:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31198-RA | 2823 | CG31198-PA | 1..2820 | 17..2836 | 14100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:12:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31198-RA | 3019 | CG31198-RA | 91..2910 | 17..2836 | 14100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:12:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21756178..21757293 | 1423..2538 | 5580 | 100 | Plus |
| 3R | 32079331 | 3R | 21755402..21756118 | 706..1422 | 3585 | 100 | Plus |
| 3R | 32079331 | 3R | 21754569..21755257 | 17..705 | 3445 | 100 | Plus |
| 3R | 32079331 | 3R | 21757352..21757649 | 2539..2836 | 1490 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:12:33 has no hits.
BO18106.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:09:25 Download gff for
BO18106.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31198-RA | 1..2823 | 17..2840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:26:33 Download gff for
BO18106.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31198-RA | 89..2915 | 14..2842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:36:35 Download gff for
BO18106.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31198-RA | 97..2910 | 23..2838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:09:26 Download gff for
BO18106.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31198-RA | 89..2915 | 14..2842 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:05:54 Download gff for
BO18106.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31198-RA | 97..2910 | 23..2838 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:05:54 Download gff for
BO18106.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21754575..21755257 | 23..705 | 100 | -> | Plus |
| 3R | 21755402..21756118 | 706..1422 | 100 | -> | Plus |
| 3R | 21756178..21757293 | 1423..2538 | 100 | -> | Plus |
| 3R | 21757352..21757649 | 2539..2838 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:36:35 Download gff for
BO18106.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17580297..17580979 | 23..705 | 100 | -> | Plus |
| arm_3R | 17581124..17581840 | 706..1422 | 100 | -> | Plus |
| arm_3R | 17581900..17583015 | 1423..2538 | 100 | -> | Plus |
| arm_3R | 17583074..17583371 | 2539..2838 | 99 | | Plus |
BO18106.pep Sequence
Translation from 16 to 2854
> BO18106.pep
MFAPRVAVLLVACVSLASAGTRQLSVDVQPPATLATELNEYRLAEHITPV
NYNITLRPYLLETDGNKRFTFDGEVWIEVISNQTTNDIYLHSKNLTYSVR
EYWQKPTTEVANPTVIQISATNTTNYDTDIVKLTASTALTANTTYILHFV
YTGLMEDDMHGFYRSSYVDDNNVTKWLGSTQFQTHHARRAFPSFDEPQFK
ATFDVTLKRHRTFNSVSNTRLISSYPSTEEGIFSDVYKTTPKMSTYLLAF
IISEFVARKDDDFGVYARPEYYAQTQYPYNVGIQILEEMGQYLDKDYYSM
GNDKMDMAAIPDFSAGAMENWGLLTYRERSLLVDESATTLASRQSIAAVV
AHEQAHMWFGDLVTCKWWSYTWLNEGFARYFQYFGTAMVEDKWELEKQFV
VDQVQSVMAMDSTNATNPLSDENTYTPAHLSRMFNSISYNKGATFIRMIK
HTMGEQQFQKSLQEYLKKYEYQSSLPEYLLGAWQANWPNSSYNESSKDIF
KSFTEQVGYPLINVTVGNSQVSFTQKRFLLKESDGSDSSLKYTVPISYTT
SETNNFLNTTPKFILKPNVTTTVQFNSTIKWIVVNIQQTGYYRVTYSDDN
WHAIHHALITANWGGIHENNRAQIVDDLFNLARAGYVTYNLTLDVIEYLQ
TETNYIPWTSAFNGFNYLTIRLGNDTADFNYYIQTLTNKAYNQLGFNEAS
NDTALDIYLRTKILSWACRYGSSDCISQAQGYFQSLATVPKNIRATVYCV
GLREGGEAEFQALYNKFKNETVATEETLLQNSFGCVKTQSLIEKVFDLII
SDEIRRQDKSSVLATLYTENNENVSPVFALVTQKYEELAEAMGGYSAVAT
VISNIAARFTTNQQLTDLENFNKANGAKFGSSQATLTAAEATVKENLEWA
TAKLGVFRSYLANYRSGSAMVNAFSAISLLMVALVTMLRNASFLDH
BO18106.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:59:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31198-PA | 940 | CG31198-PA | 1..940 | 1..940 | 4898 | 100 | Plus |
| CG42335-PE | 924 | CG42335-PE | 20..921 | 36..938 | 1380 | 34.8 | Plus |
| CG14516-PC | 990 | CG14516-PC | 102..949 | 40..873 | 1201 | 34.1 | Plus |
| CG14516-PA | 990 | CG14516-PA | 102..949 | 40..873 | 1201 | 34.1 | Plus |
| CG14516-PB | 999 | CG14516-PB | 111..958 | 40..873 | 1201 | 34.1 | Plus |
