Clone Sequence Records
BO18109.3prime Sequence
632 bp (632 high quality bases) assembled on 2006-10-13
> BO18109.3prime
ATGGTCTAGAAAGCTTGCGTAGTGCTGCGTCGAGTGGTGCTGCGCACGTG
TGGGTCTGGGCCGCACTGGCACCCGGATGCAATTCTGCGGCTTATCGCCC
AGCTGCAGCTGTCCACAACGCCGCCTGTCGGTGCGCAGCCAGTTGTTCCT
GGGCTGACTGTGGCAATTCTGGTTGCGCAGCTGGCAACTATTGGCCAACA
CCTTGCACTGCCGGTTGTCCCTGCTACGCACGCAGATTTGCTGGCTGGGC
GGTGATCTCTTGCAGACGACGGGACGTGCGGGGCAGGGATTATAGCAGGG
TCGCCGATTGGCGGCACCCGTTCCCCTCACGTTGCGGCAATCGATGTCGC
GGGTGTGCCGCACGCCCTCCGGCTGCCGTAGCACATTGGCCAGCATCAGG
TGGCAGATGTTCTCGAAACGTTGGCACTCGCCACGCGCAGTTCGTCCGCA
AACTCTGGGACTTGTCTGGGAGCAGACCTGCGGGAAGAGCGGGCAATTGC
GGGGCGTGGTGCGGGCGGTGGTAACCGGCGGACGTCGGCTCGGCGGTTGG
GTGGTGCCGCTGGCCATTGACCACAGGAGGGTCATGCCGAAAATCAAAGT
CAGTTGTTGGCTGTGCATGTCGACTGATAACT
BO18109.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32762-PA | 603 | CG32762-RA | 1..600 | 618..19 | 3000 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:42:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32762-RB | 854 | CG32762-RB | 67..666 | 618..19 | 3000 | 100 | Minus |
CG32762-RA | 822 | CG32762-RA | 35..634 | 618..19 | 3000 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:42:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5500618..5501062 | 144..588 | 2225 | 100 | Plus |
X | 23542271 | X | 5500396..5500520 | 19..143 | 625 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:42:54 has no hits.
BO18109.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:18:22 Download gff for
BO18109.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32762-PA | 1..603 | 18..618 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:40:48 Download gff for
BO18109.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32762-RA | 14..628 | 13..628 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:55:32 Download gff for
BO18109.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32762-RA | 25..639 | 13..628 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:55:32 Download gff for
BO18109.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5500391..5500520 | 13..143 | 97 | <- | Plus |
X | 5500618..5501061 | 144..587 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:40:48 Download gff for
BO18109.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5394424..5394553 | 13..143 | 97 | <- | Plus |
arm_X | 5394651..5395094 | 144..587 | 100 | <- | Plus |
BO18109.5prime Sequence
632 bp (632 high quality bases) assembled on 2006-10-13
> BO18109.5prime
GAAGTTATCAGTCGACATGCACAGCCAACAACTGACTTTGATTTTCGGCA
TGACCCTCCTGTGGTCAATGGCCAGCGGCACCACCCAACCGCCGAGCCGA
CGTCCGCCGGTTACCACCGCCCGCACCACGCCCCGCAATTGCCCGCTCTT
CCCGCAGGTCTGCTCCCAGACAAGTCCCAGAGTTTGCGGACGAACTGCGC
GTGGCGAGTGCCAACGTTTCGAGAACATCTGCCACCTGATGCTGGCCAAT
GTGCTACGGCAGCCGGAGGGCGTGCGGCACACCCGCGACATCGATTGCCG
CAACGTGAGGGGAACGGGTGCCGCCAATCGGCGACCCTGCTATAATCCCT
GCCCCGCACGTCCCGTCGTCTGCAAGAGATCACCGCCCAGCCAGCAAATC
TGCGTGCGTAGCAGGGACAACCGGCAGTGCAAGGTGTTGGCCAATAGTTG
CCAGCTGCGCAACCAGAATTGCCACAGTCAGCCCAGGAACAACTGGCTGC
GCACCGACAGGCGGCGTTGTGGACAGCTGCAGCTGGGCGATAAGCCGCAG
AATTGCATCCGGGTGCCAGTGCGGCCCAGACCCACACGTGCGCAGCACCA
CTCGACGCAGCACTACGCAAGCTTTCTAGACC
BO18109.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32762-PA | 603 | CG32762-RA | 1..600 | 17..616 | 3000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:07:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32762-RB | 854 | CG32762-RB | 67..666 | 17..616 | 3000 | 100 | Plus |
CG32762-RA | 822 | CG32762-RA | 35..634 | 17..616 | 3000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:07:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5500618..5501062 | 491..47 | 2225 | 100 | Minus |
X | 23542271 | X | 5500396..5500520 | 616..492 | 625 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 10:07:33 has no hits.
BO18109.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:18:23 Download gff for
BO18109.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32762-PA | 1..603 | 17..617 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:33:27 Download gff for
BO18109.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32762-RA | 14..628 | 7..622 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:43:01 Download gff for
BO18109.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32762-RA | 25..639 | 7..622 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:43:01 Download gff for
BO18109.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5500391..5500520 | 492..622 | 97 | <- | Minus |
X | 5500618..5501061 | 48..491 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:33:27 Download gff for
BO18109.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5394424..5394553 | 492..622 | 97 | <- | Minus |
arm_X | 5394651..5395094 | 48..491 | 100 | <- | Minus |
BO18109.complete Sequence
634 bp assembled on 2006-10-11
GenBank Submission: FJ634321
> BO18109.complete
GAAGTTATCAGTCGACATGCACAGCCAACAACTGACTTTGATTTTCGGCA
TGACCCTCCTGTGGTCAATGGCCAGCGGCACCACCCAACCGCCGAGCCGA
CGTCCGCCGGTTACCACCGCCCGCACCACGCCCCGCAATTGCCCGCTCTT
CCCGCAGGTCTGCTCCCAGACAAGTCCCAGAGTTTGCGGACGAACTGCGC
GTGGCGAGTGCCAACGTTTCGAGAACATCTGCCACCTGATGCTGGCCAAT
GTGCTACGGCAGCCGGAGGGCGTGCGGCACACCCGCGACATCGATTGCCG
CAACGTGAGGGGAACGGGTGCCGCCAATCGGCGACCCTGCTATAATCCCT
GCCCCGCACGTCCCGTCGTCTGCAAGAGATCACCGCCCAGCCAGCAAATC
TGCGTGCGTAGCAGGGACAACCGGCAGTGCAAGGTGTTGGCCAATAGTTG
CCAGCTGCGCAACCAGAATTGCCACAGTCAGCCCAGGAACAACTGGCTGC
GCACCGACAGGCGGCGTTGTGGACAGCTGCAGCTGGGCGATAAGCCGCAG
AATTGCATCCGGGTGCCAGTGCGGCCCAGACCCACACGTGCGCAGCACCA
CTCGACGCAGCACTACGCAAGCTTTCTAGACCAT
BO18109.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:04:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32762-RB | 603 | CG32762-PB | 1..600 | 17..616 | 3000 | 100 | Plus |
CG32762-RA | 603 | CG32762-PA | 1..600 | 17..616 | 3000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:04:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32762-RB | 854 | CG32762-RB | 67..666 | 17..616 | 3000 | 100 | Plus |
CG32762-RA | 822 | CG32762-RA | 35..634 | 17..616 | 3000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:04:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5500618..5501062 | 491..47 | 2225 | 100 | Minus |
X | 23542271 | X | 5500396..5500520 | 616..492 | 625 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:04:49 has no hits.
BO18109.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:46:00 Download gff for
BO18109.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32762-RA | 1..603 | 17..617 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:04:18 Download gff for
BO18109.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32762-RA | 14..628 | 7..622 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:33:00 Download gff for
BO18109.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32762-RA | 24..623 | 17..618 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:46:01 Download gff for
BO18109.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32762-RA | 14..628 | 7..622 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:02:48 Download gff for
BO18109.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32762-RA | 35..634 | 17..618 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:02:48 Download gff for
BO18109.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5500394..5500520 | 492..618 | 98 | <- | Minus |
X | 5500618..5501061 | 48..491 | 100 | <- | Minus |
X | 5501133..5501163 | 17..47 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:33:00 Download gff for
BO18109.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5394427..5394553 | 492..618 | 98 | <- | Minus |
arm_X | 5394651..5395094 | 48..491 | 100 | <- | Minus |
arm_X | 5395166..5395196 | 17..47 | 100 | | Minus |
BO18109.pep Sequence
Translation from 16 to 634
> BO18109.pep
MHSQQLTLIFGMTLLWSMASGTTQPPSRRPPVTTARTTPRNCPLFPQVCS
QTSPRVCGRTARGECQRFENICHLMLANVLRQPEGVRHTRDIDCRNVRGT
GAANRRPCYNPCPARPVVCKRSPPSQQICVRSRDNRQCKVLANSCQLRNQ
NCHSQPRNNWLRTDRRRCGQLQLGDKPQNCIRVPVRPRPTRAQHHSTQHY
ASFLDH
BO18109.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:38:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32762-PB | 200 | CG32762-PB | 1..200 | 1..200 | 1116 | 100 | Plus |
CG32762-PA | 200 | CG32762-PA | 1..200 | 1..200 | 1116 | 100 | Plus |