Clone BO18109 Report

Search the DGRC for BO18109

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:181
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptCG32762-RA
Protein status:BO18109.pep: validated full length
Sequenced Size:634

Clone Sequence Records

BO18109.3prime Sequence

632 bp (632 high quality bases) assembled on 2006-10-13

> BO18109.3prime
ATGGTCTAGAAAGCTTGCGTAGTGCTGCGTCGAGTGGTGCTGCGCACGTG
TGGGTCTGGGCCGCACTGGCACCCGGATGCAATTCTGCGGCTTATCGCCC
AGCTGCAGCTGTCCACAACGCCGCCTGTCGGTGCGCAGCCAGTTGTTCCT
GGGCTGACTGTGGCAATTCTGGTTGCGCAGCTGGCAACTATTGGCCAACA
CCTTGCACTGCCGGTTGTCCCTGCTACGCACGCAGATTTGCTGGCTGGGC
GGTGATCTCTTGCAGACGACGGGACGTGCGGGGCAGGGATTATAGCAGGG
TCGCCGATTGGCGGCACCCGTTCCCCTCACGTTGCGGCAATCGATGTCGC
GGGTGTGCCGCACGCCCTCCGGCTGCCGTAGCACATTGGCCAGCATCAGG
TGGCAGATGTTCTCGAAACGTTGGCACTCGCCACGCGCAGTTCGTCCGCA
AACTCTGGGACTTGTCTGGGAGCAGACCTGCGGGAAGAGCGGGCAATTGC
GGGGCGTGGTGCGGGCGGTGGTAACCGGCGGACGTCGGCTCGGCGGTTGG
GTGGTGCCGCTGGCCATTGACCACAGGAGGGTCATGCCGAAAATCAAAGT
CAGTTGTTGGCTGTGCATGTCGACTGATAACT

BO18109.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG32762-PA 603 CG32762-RA 1..600 618..19 3000 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:42:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG32762-RB 854 CG32762-RB 67..666 618..19 3000 100 Minus
CG32762-RA 822 CG32762-RA 35..634 618..19 3000 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:42:53
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5500618..5501062 144..588 2225 100 Plus
X 23542271 X 5500396..5500520 19..143 625 100 Plus
Blast to na_te.dros performed on 2015-02-12 17:42:54 has no hits.

BO18109.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:18:22 Download gff for BO18109.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32762-PA 1..603 18..618 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:40:48 Download gff for BO18109.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32762-RA 14..628 13..628 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:55:32 Download gff for BO18109.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32762-RA 25..639 13..628 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:55:32 Download gff for BO18109.3prime
Subject Subject Range Query Range Percent Splice Strand
X 5500391..5500520 13..143 97 <- Plus
X 5500618..5501061 144..587 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:40:48 Download gff for BO18109.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5394424..5394553 13..143 97 <- Plus
arm_X 5394651..5395094 144..587 100 <- Plus

BO18109.5prime Sequence

632 bp (632 high quality bases) assembled on 2006-10-13

> BO18109.5prime
GAAGTTATCAGTCGACATGCACAGCCAACAACTGACTTTGATTTTCGGCA
TGACCCTCCTGTGGTCAATGGCCAGCGGCACCACCCAACCGCCGAGCCGA
CGTCCGCCGGTTACCACCGCCCGCACCACGCCCCGCAATTGCCCGCTCTT
CCCGCAGGTCTGCTCCCAGACAAGTCCCAGAGTTTGCGGACGAACTGCGC
GTGGCGAGTGCCAACGTTTCGAGAACATCTGCCACCTGATGCTGGCCAAT
GTGCTACGGCAGCCGGAGGGCGTGCGGCACACCCGCGACATCGATTGCCG
CAACGTGAGGGGAACGGGTGCCGCCAATCGGCGACCCTGCTATAATCCCT
GCCCCGCACGTCCCGTCGTCTGCAAGAGATCACCGCCCAGCCAGCAAATC
TGCGTGCGTAGCAGGGACAACCGGCAGTGCAAGGTGTTGGCCAATAGTTG
CCAGCTGCGCAACCAGAATTGCCACAGTCAGCCCAGGAACAACTGGCTGC
GCACCGACAGGCGGCGTTGTGGACAGCTGCAGCTGGGCGATAAGCCGCAG
AATTGCATCCGGGTGCCAGTGCGGCCCAGACCCACACGTGCGCAGCACCA
CTCGACGCAGCACTACGCAAGCTTTCTAGACC

BO18109.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG32762-PA 603 CG32762-RA 1..600 17..616 3000 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:07:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG32762-RB 854 CG32762-RB 67..666 17..616 3000 100 Plus
CG32762-RA 822 CG32762-RA 35..634 17..616 3000 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:07:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5500618..5501062 491..47 2225 100 Minus
X 23542271 X 5500396..5500520 616..492 625 100 Minus
Blast to na_te.dros performed on 2015-01-31 10:07:33 has no hits.

BO18109.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:18:23 Download gff for BO18109.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32762-PA 1..603 17..617 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:33:27 Download gff for BO18109.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32762-RA 14..628 7..622 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:43:01 Download gff for BO18109.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32762-RA 25..639 7..622 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:43:01 Download gff for BO18109.5prime
Subject Subject Range Query Range Percent Splice Strand
X 5500391..5500520 492..622 97 <- Minus
X 5500618..5501061 48..491 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:33:27 Download gff for BO18109.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5394424..5394553 492..622 97 <- Minus
arm_X 5394651..5395094 48..491 100 <- Minus

BO18109.complete Sequence

634 bp assembled on 2006-10-11

GenBank Submission: FJ634321

> BO18109.complete
GAAGTTATCAGTCGACATGCACAGCCAACAACTGACTTTGATTTTCGGCA
TGACCCTCCTGTGGTCAATGGCCAGCGGCACCACCCAACCGCCGAGCCGA
CGTCCGCCGGTTACCACCGCCCGCACCACGCCCCGCAATTGCCCGCTCTT
CCCGCAGGTCTGCTCCCAGACAAGTCCCAGAGTTTGCGGACGAACTGCGC
GTGGCGAGTGCCAACGTTTCGAGAACATCTGCCACCTGATGCTGGCCAAT
GTGCTACGGCAGCCGGAGGGCGTGCGGCACACCCGCGACATCGATTGCCG
CAACGTGAGGGGAACGGGTGCCGCCAATCGGCGACCCTGCTATAATCCCT
GCCCCGCACGTCCCGTCGTCTGCAAGAGATCACCGCCCAGCCAGCAAATC
TGCGTGCGTAGCAGGGACAACCGGCAGTGCAAGGTGTTGGCCAATAGTTG
CCAGCTGCGCAACCAGAATTGCCACAGTCAGCCCAGGAACAACTGGCTGC
GCACCGACAGGCGGCGTTGTGGACAGCTGCAGCTGGGCGATAAGCCGCAG
AATTGCATCCGGGTGCCAGTGCGGCCCAGACCCACACGTGCGCAGCACCA
CTCGACGCAGCACTACGCAAGCTTTCTAGACCAT

BO18109.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:04:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG32762-RB 603 CG32762-PB 1..600 17..616 3000 100 Plus
CG32762-RA 603 CG32762-PA 1..600 17..616 3000 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:04:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG32762-RB 854 CG32762-RB 67..666 17..616 3000 100 Plus
CG32762-RA 822 CG32762-RA 35..634 17..616 3000 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:04:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5500618..5501062 491..47 2225 100 Minus
X 23542271 X 5500396..5500520 616..492 625 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:04:49 has no hits.

BO18109.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:46:00 Download gff for BO18109.complete
Subject Subject Range Query Range Percent Splice Strand
CG32762-RA 1..603 17..617 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:04:18 Download gff for BO18109.complete
Subject Subject Range Query Range Percent Splice Strand
CG32762-RA 14..628 7..622 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:33:00 Download gff for BO18109.complete
Subject Subject Range Query Range Percent Splice Strand
CG32762-RA 24..623 17..618 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:46:01 Download gff for BO18109.complete
Subject Subject Range Query Range Percent Splice Strand
CG32762-RA 14..628 7..622 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:02:48 Download gff for BO18109.complete
Subject Subject Range Query Range Percent Splice Strand
CG32762-RA 35..634 17..618 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:02:48 Download gff for BO18109.complete
Subject Subject Range Query Range Percent Splice Strand
X 5500394..5500520 492..618 98 <- Minus
X 5500618..5501061 48..491 100 <- Minus
X 5501133..5501163 17..47 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:33:00 Download gff for BO18109.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5394427..5394553 492..618 98 <- Minus
arm_X 5394651..5395094 48..491 100 <- Minus
arm_X 5395166..5395196 17..47 100   Minus

BO18109.pep Sequence

Translation from 16 to 634

> BO18109.pep
MHSQQLTLIFGMTLLWSMASGTTQPPSRRPPVTTARTTPRNCPLFPQVCS
QTSPRVCGRTARGECQRFENICHLMLANVLRQPEGVRHTRDIDCRNVRGT
GAANRRPCYNPCPARPVVCKRSPPSQQICVRSRDNRQCKVLANSCQLRNQ
NCHSQPRNNWLRTDRRRCGQLQLGDKPQNCIRVPVRPRPTRAQHHSTQHY
ASFLDH

BO18109.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:38:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG32762-PB 200 CG32762-PB 1..200 1..200 1116 100 Plus
CG32762-PA 200 CG32762-PA 1..200 1..200 1116 100 Plus