Clone BO18112 Report

Search the DGRC for BO18112

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:181
Well:12
Vector:pDNR-Dual
Associated Gene/TranscriptCG17593-RA
Protein status:BO18112.pep: validated full length
Sequenced Size:1462

Clone Sequence Records

BO18112.3prime Sequence

804 bp (724 high quality bases) assembled on 2006-10-13

> BO18112.3prime
ATGGTCTAGAAAGCTTGCCAGGGATTTGACGGCCAGTCTCTTCATCTTGG
GCGCATTCCTCTTGGCCTGGCGCTTCTGCTCCTTAGCCTCCCAACGGCGC
TGCTTCTCTGGGTCCTCGTCGGCCAGAATGCGCTCCTTCTCCTGCTTACG
CTTATCCTCACGTCTCTGAGCGGCAGCCTCGGCGCGGGCGGCATGGGTGC
TCTTCAAGAACTCCTCCTCCACGCGCTGACGGTTTTTGTCCGACTTGGCT
TTGCCCTCCTTGGACATGCGATAGGTCTTTAAACGCTCCATTAAATAAAA
GATCAACAATAACAACGGCTTAATGGTCTCCATTTCGGCGTGCTTCGGCA
AATTGAAGCCTGCGAGAAGCACGGCCTTGGTTTCGGGCTGCTTGAGGGTG
CCACCCTCTTCCTGCTGGATGGGCCCACTGAACTGGTCCGAGATGTGCAG
GTAATCGATATAGCTTTGGTACTTGTTAAGTGCAGTGATAATACGTGACT
CGAGGATGGCGGACGTGGCCTCCGGAATTTCGGAGAGCACGCCAAAGCCG
GTGGGTACATTGTAGCGATCCTCCGGCTTGCCGACTAGACTACAGAACTT
GCTCAGATCCGTATACTCTTTGAAGAGCTTGGTAATTGTCTTTTTGGTAC
CAACTGCAAATACAAAGGCATCCATTACACCGCGTGTGAGTTCAATTTTG
ATGTGGGCCTGGTCCAGCTGTGGGCGCATTAATCCCGCCACCAAGGAGAC
CAGATCCTGTCGCTTGATCATCTTCAGCTCGACGAGCATGCCTTCGCCAC
AGGT

BO18112.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG17593-PA 1431 CG17593-RA 643..1428 804..19 3880 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:35:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG17593-RB 1832 CG17593-RB 755..1540 804..19 3900 99.7 Minus
CG17593-RA 1674 CG17593-RA 755..1540 804..19 3900 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:35:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3516329..3516678 604..255 1750 100 Minus
2L 23513712 2L 3516734..3516972 257..19 1195 100 Minus
2L 23513712 2L 3516068..3516268 804..604 975 99 Minus
Blast to na_te.dros performed on 2015-02-03 06:35:08 has no hits.

BO18112.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:18:24 Download gff for BO18112.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17593-PA 643..1431 18..804 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:29:15 Download gff for BO18112.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17593-RA 755..1547 10..804 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:37:39 Download gff for BO18112.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17593-RA 755..1547 10..804 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:37:39 Download gff for BO18112.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 3516736..3516979 10..255 98   Minus
2L 3516068..3516268 604..804 99 -> Minus
2L 3516330..3516677 256..603 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:29:15 Download gff for BO18112.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3516068..3516268 604..804 99 -> Minus
arm_2L 3516330..3516677 256..603 100 -> Minus
arm_2L 3516736..3516979 10..255 98   Minus

BO18112.5prime Sequence

806 bp (777 high quality bases) assembled on 2006-10-13

> BO18112.5prime
GAAGTTATCAGTCGACATGCGACCAGTATTTGCCTTCCTGCTCCTGGCGC
TCATCTGCTTCGCCAGCACTAAGTCGGAGAGCGACTTCGAGGAAGACGAC
AGTGATGATTTTGCCGAATTCGACGACGGCAATTTTTACGCTGAGCCAGC
GGCCAAGAATGCAGATTCGTTCTCCGGAGGAGCAGGATCCAGCCACGGCG
AGTCCCGCGACGATCCGCCTGCCAAGGAGCCGCGGAAGCAAGCACAAAAC
CAGGAGAGCGACGAGGAGGACGGCCTTGTCGAGGATGACGATGAGTTTGA
GCACTTCCAGGATGAGGAAGAGTTCGAGGGCTACGATGGCGGAGACTCCA
AGGATCCGCCCATCGACCAAAAGGTTGAGCCAAAACTGAACATACCAAAC
ATCCCTCTGCACTTCCGCACCCACTGGGACTCCTACTGGATGGAGATGCT
CATGGTGGCAGGGTTGTTGGCCTACTTCGCCAACTTCTTTGCGGGAAAGG
CCAAAAACGCGCGTTTGGCGCAGCTTTGGTTCAGTACCCACAGAGCCCTG
CTGGATGAGAACTTCGCCTTGGTCGGAGACGATGGCAAGGCGGAGAACGA
GAATCCGGGACTGATAAAGGAGAGCGAGAGTCTTTATACTCTCTGGTGCT
CCGGCAGGACCTGTTGCGAAGGCATGCTCGTCGAGCTGAAGATGATCAAG
CGACAGGATCTGGTCTCCTTGGTGGCGGGACTAATGCGCCCACAGCTGGA
CCAGGCCCACATCAAAATTGAACTCACACGCGGTGTAATGGATGCCTTTG
TATTTG

BO18112.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG17593-PA 1431 CG17593-RA 1..790 17..806 3950 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:27:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG17593-RB 1832 CG17593-RB 113..902 17..806 3950 100 Plus
CG17593-RA 1674 CG17593-RA 113..902 17..806 3950 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:27:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3515714..3516215 305..806 2510 100 Plus
2L 23513712 2L 3514984..3515278 17..311 1475 100 Plus
Blast to na_te.dros performed on 2015-02-10 17:27:18 has no hits.

BO18112.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:18:25 Download gff for BO18112.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17593-PA 1..790 17..806 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:41:02 Download gff for BO18112.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17593-RA 113..902 17..806 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:57:22 Download gff for BO18112.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17593-RA 113..902 17..806 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:57:22 Download gff for BO18112.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 3514984..3515277 17..310 100 -> Plus
2L 3515720..3516215 311..806 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:41:02 Download gff for BO18112.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3514984..3515277 17..310 100 -> Plus
arm_2L 3515720..3516215 311..806 100   Plus

BO18112.complete Sequence

1462 bp assembled on 2006-10-11

GenBank Submission: FJ634322

> BO18112.complete
GAAGTTATCAGTCGACATGCGACCAGTATTTGCCTTCCTGCTCCTGGCGC
TCATCTGCTTCGCCAGCACTAAGTCGGAGAGCGACTTCGAGGAAGACGAC
AGTGATGATTTTGCCGAATTCGACGACGGCAATTTTTACGCTGAGCCAGC
GGCCAAGAATGCAGATTCGTTCTCCGGAGGAGCAGGATCCAGCCACGGCG
AGTCCCGCGACGATCCGCCTGCCAAGGAGCCGCGGAAGCAAGCACAAAAC
CAGGAGAGCGACGAGGAGGACGGCCTTGTCGAGGATGACGATGAGTTTGA
GCACTTCCAGGATGAGGAAGAGTTCGAGGGCTACGATGGCGGAGACTCCA
AGGATCCGCCCATCGACCAAAAGGTTGAGCCAAAACTGAACATACCAAAC
ATCCCTCTGCACTTCCGCACCCACTGGGACTCCTACTGGATGGAGATGCT
CATGGTGGCAGGGTTGTTGGCCTACTTCGCCAACTTCTTTGCGGGAAAGG
CCAAAAACGCGCGTTTGGCGCAGCTTTGGTTCAGTACCCACAGAGCCCTG
CTGGATGAGAACTTCGCCTTGGTCGGAGACGATGGCAAGGCGGAGAACGA
GAATCCGGGACTGATAAAGGAGAGCGAGAGTCTTTATACTCTCTGGTGCT
CCGGCAGGACCTGTTGCGAAGGCATGCTCGTCGAGCTGAAGATGATCAAG
CGACAGGATCTGGTCTCCTTGGTGGCGGGACTAATGCGCCCACAGCTGGA
CCAGGCCCACATCAAAATTGAACTCACACGCGGTGTAATGGATGCCTTTG
TATTTGCAGTTGGTACCAAAAAGACAATTACCAAGCTCTTCAAAGAGTAT
ACGGATCTGAGCAAGTTCTGTAGTCTAGTCGGCAAGCCGGAGGATCGCTA
CAATGTACCCACCGGCTTTGGCGTGCTCTCCGAAATTCCGGAGGCCACGT
CCGCCATCCTCGAGTCACGTATTATCACTGCACTTAACAAGTACCAAAGC
TATATCGATTACCTGCACATCTCGGACCAGTTCAGTGGGCCCATCCAGCA
GGAAGAGGGTGGCACCCTCAAGCAGCCCGAAACCAAGGCCGTGCTTCTCG
CAGGCTTCAATTTGCCGAAGCACGCCGAAATGGAGACCATTAAGCCGTTG
TTATTGTTGATCTTTTATTTAATGGAGCGTTTAAAGACCTATCGCATGTC
CAAGGAGGGCAAAGCCAAGTCGGACAAAAACCGTCAGCGCGTGGAGGAGG
AGTTCTTGAAGAGCACCCATGCCGCCCGCGCCGAGGCTGCCGCTCAGAGA
CGTGAGGATAAGCGTAAGCAGGAGAAGGAGCGCATTCTGGCCGACGAGGA
CCCAGAGAAGCAGCGCCGTTGGGAGGCTAAGGAGCAGAAGCGCCAGGCCA
AGAGGAATGCGCCCAAGATGAAGAGACTGGCCGTCAAATCCCTGGCAAGC
TTTCTAGACCAT

BO18112.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:28:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG17593-RB 1431 CG17593-PB 1..1428 17..1444 7140 100 Plus
CG17593-RA 1431 CG17593-PA 1..1428 17..1444 7140 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:28:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG17593-RB 1832 CG17593-RB 113..1540 17..1444 7140 100 Plus
CG17593-RA 1674 CG17593-RA 113..1540 17..1444 7140 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:28:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3515714..3516268 305..859 2775 100 Plus
2L 23513712 2L 3516329..3516678 859..1208 1750 100 Plus
2L 23513712 2L 3514984..3515278 17..311 1475 100 Plus
2L 23513712 2L 3516734..3516972 1206..1444 1195 100 Plus
Blast to na_te.dros performed on 2014-11-26 22:28:34 has no hits.

BO18112.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:47 Download gff for BO18112.complete
Subject Subject Range Query Range Percent Splice Strand
CG17593-RA 1..1431 17..1445 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:41:08 Download gff for BO18112.complete
Subject Subject Range Query Range Percent Splice Strand
CG17593-RA 248..1682 17..1453 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:59:23 Download gff for BO18112.complete
Subject Subject Range Query Range Percent Splice Strand
CG17593-RA 113..1540 17..1446 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:47 Download gff for BO18112.complete
Subject Subject Range Query Range Percent Splice Strand
CG17593-RA 248..1682 17..1453 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:02:12 Download gff for BO18112.complete
Subject Subject Range Query Range Percent Splice Strand
CG17593-RA 113..1540 17..1446 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:02:12 Download gff for BO18112.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3514984..3515277 17..310 100 -> Plus
2L 3515720..3516268 311..859 100 -> Plus
2L 3516330..3516677 860..1207 100 -> Plus
2L 3516736..3516972 1208..1446 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:59:23 Download gff for BO18112.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3514984..3515277 17..310 100 -> Plus
arm_2L 3515720..3516268 311..859 100 -> Plus
arm_2L 3516330..3516677 860..1207 100 -> Plus
arm_2L 3516736..3516972 1208..1446 99   Plus

BO18112.pep Sequence

Translation from 16 to 1462

> BO18112.pep
MRPVFAFLLLALICFASTKSESDFEEDDSDDFAEFDDGNFYAEPAAKNAD
SFSGGAGSSHGESRDDPPAKEPRKQAQNQESDEEDGLVEDDDEFEHFQDE
EEFEGYDGGDSKDPPIDQKVEPKLNIPNIPLHFRTHWDSYWMEMLMVAGL
LAYFANFFAGKAKNARLAQLWFSTHRALLDENFALVGDDGKAENENPGLI
KESESLYTLWCSGRTCCEGMLVELKMIKRQDLVSLVAGLMRPQLDQAHIK
IELTRGVMDAFVFAVGTKKTITKLFKEYTDLSKFCSLVGKPEDRYNVPTG
FGVLSEIPEATSAILESRIITALNKYQSYIDYLHISDQFSGPIQQEEGGT
LKQPETKAVLLAGFNLPKHAEMETIKPLLLLIFYLMERLKTYRMSKEGKA
KSDKNRQRVEEEFLKSTHAARAEAAAQRREDKRKQEKERILADEDPEKQR
RWEAKEQKRQAKRNAPKMKRLAVKSLASFLDH

BO18112.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:06:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG17593-PB 476 CG17593-PB 1..476 1..476 2472 100 Plus
CG17593-PA 476 CG17593-PA 1..476 1..476 2472 100 Plus