Clone Sequence Records
BO18112.3prime Sequence
804 bp (724 high quality bases) assembled on 2006-10-13
> BO18112.3prime
ATGGTCTAGAAAGCTTGCCAGGGATTTGACGGCCAGTCTCTTCATCTTGG
GCGCATTCCTCTTGGCCTGGCGCTTCTGCTCCTTAGCCTCCCAACGGCGC
TGCTTCTCTGGGTCCTCGTCGGCCAGAATGCGCTCCTTCTCCTGCTTACG
CTTATCCTCACGTCTCTGAGCGGCAGCCTCGGCGCGGGCGGCATGGGTGC
TCTTCAAGAACTCCTCCTCCACGCGCTGACGGTTTTTGTCCGACTTGGCT
TTGCCCTCCTTGGACATGCGATAGGTCTTTAAACGCTCCATTAAATAAAA
GATCAACAATAACAACGGCTTAATGGTCTCCATTTCGGCGTGCTTCGGCA
AATTGAAGCCTGCGAGAAGCACGGCCTTGGTTTCGGGCTGCTTGAGGGTG
CCACCCTCTTCCTGCTGGATGGGCCCACTGAACTGGTCCGAGATGTGCAG
GTAATCGATATAGCTTTGGTACTTGTTAAGTGCAGTGATAATACGTGACT
CGAGGATGGCGGACGTGGCCTCCGGAATTTCGGAGAGCACGCCAAAGCCG
GTGGGTACATTGTAGCGATCCTCCGGCTTGCCGACTAGACTACAGAACTT
GCTCAGATCCGTATACTCTTTGAAGAGCTTGGTAATTGTCTTTTTGGTAC
CAACTGCAAATACAAAGGCATCCATTACACCGCGTGTGAGTTCAATTTTG
ATGTGGGCCTGGTCCAGCTGTGGGCGCATTAATCCCGCCACCAAGGAGAC
CAGATCCTGTCGCTTGATCATCTTCAGCTCGACGAGCATGCCTTCGCCAC
AGGT
BO18112.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17593-PA | 1431 | CG17593-RA | 643..1428 | 804..19 | 3880 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:35:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17593-RB | 1832 | CG17593-RB | 755..1540 | 804..19 | 3900 | 99.7 | Minus |
CG17593-RA | 1674 | CG17593-RA | 755..1540 | 804..19 | 3900 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:35:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3516329..3516678 | 604..255 | 1750 | 100 | Minus |
2L | 23513712 | 2L | 3516734..3516972 | 257..19 | 1195 | 100 | Minus |
2L | 23513712 | 2L | 3516068..3516268 | 804..604 | 975 | 99 | Minus |
Blast to na_te.dros performed on 2015-02-03 06:35:08 has no hits.
BO18112.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:18:24 Download gff for
BO18112.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17593-PA | 643..1431 | 18..804 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:29:15 Download gff for
BO18112.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17593-RA | 755..1547 | 10..804 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:37:39 Download gff for
BO18112.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17593-RA | 755..1547 | 10..804 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:37:39 Download gff for
BO18112.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3516736..3516979 | 10..255 | 98 | | Minus |
2L | 3516068..3516268 | 604..804 | 99 | -> | Minus |
2L | 3516330..3516677 | 256..603 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:29:15 Download gff for
BO18112.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3516068..3516268 | 604..804 | 99 | -> | Minus |
arm_2L | 3516330..3516677 | 256..603 | 100 | -> | Minus |
arm_2L | 3516736..3516979 | 10..255 | 98 | | Minus |
BO18112.5prime Sequence
806 bp (777 high quality bases) assembled on 2006-10-13
> BO18112.5prime
GAAGTTATCAGTCGACATGCGACCAGTATTTGCCTTCCTGCTCCTGGCGC
TCATCTGCTTCGCCAGCACTAAGTCGGAGAGCGACTTCGAGGAAGACGAC
AGTGATGATTTTGCCGAATTCGACGACGGCAATTTTTACGCTGAGCCAGC
GGCCAAGAATGCAGATTCGTTCTCCGGAGGAGCAGGATCCAGCCACGGCG
AGTCCCGCGACGATCCGCCTGCCAAGGAGCCGCGGAAGCAAGCACAAAAC
CAGGAGAGCGACGAGGAGGACGGCCTTGTCGAGGATGACGATGAGTTTGA
GCACTTCCAGGATGAGGAAGAGTTCGAGGGCTACGATGGCGGAGACTCCA
AGGATCCGCCCATCGACCAAAAGGTTGAGCCAAAACTGAACATACCAAAC
ATCCCTCTGCACTTCCGCACCCACTGGGACTCCTACTGGATGGAGATGCT
CATGGTGGCAGGGTTGTTGGCCTACTTCGCCAACTTCTTTGCGGGAAAGG
CCAAAAACGCGCGTTTGGCGCAGCTTTGGTTCAGTACCCACAGAGCCCTG
CTGGATGAGAACTTCGCCTTGGTCGGAGACGATGGCAAGGCGGAGAACGA
GAATCCGGGACTGATAAAGGAGAGCGAGAGTCTTTATACTCTCTGGTGCT
CCGGCAGGACCTGTTGCGAAGGCATGCTCGTCGAGCTGAAGATGATCAAG
CGACAGGATCTGGTCTCCTTGGTGGCGGGACTAATGCGCCCACAGCTGGA
CCAGGCCCACATCAAAATTGAACTCACACGCGGTGTAATGGATGCCTTTG
TATTTG
BO18112.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17593-PA | 1431 | CG17593-RA | 1..790 | 17..806 | 3950 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:27:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17593-RB | 1832 | CG17593-RB | 113..902 | 17..806 | 3950 | 100 | Plus |
CG17593-RA | 1674 | CG17593-RA | 113..902 | 17..806 | 3950 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:27:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3515714..3516215 | 305..806 | 2510 | 100 | Plus |
2L | 23513712 | 2L | 3514984..3515278 | 17..311 | 1475 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:27:18 has no hits.
BO18112.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:18:25 Download gff for
BO18112.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17593-PA | 1..790 | 17..806 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:41:02 Download gff for
BO18112.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17593-RA | 113..902 | 17..806 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:57:22 Download gff for
BO18112.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17593-RA | 113..902 | 17..806 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:57:22 Download gff for
BO18112.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3514984..3515277 | 17..310 | 100 | -> | Plus |
2L | 3515720..3516215 | 311..806 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:41:02 Download gff for
BO18112.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3514984..3515277 | 17..310 | 100 | -> | Plus |
arm_2L | 3515720..3516215 | 311..806 | 100 | | Plus |
BO18112.complete Sequence
1462 bp assembled on 2006-10-11
GenBank Submission: FJ634322
> BO18112.complete
GAAGTTATCAGTCGACATGCGACCAGTATTTGCCTTCCTGCTCCTGGCGC
TCATCTGCTTCGCCAGCACTAAGTCGGAGAGCGACTTCGAGGAAGACGAC
AGTGATGATTTTGCCGAATTCGACGACGGCAATTTTTACGCTGAGCCAGC
GGCCAAGAATGCAGATTCGTTCTCCGGAGGAGCAGGATCCAGCCACGGCG
AGTCCCGCGACGATCCGCCTGCCAAGGAGCCGCGGAAGCAAGCACAAAAC
CAGGAGAGCGACGAGGAGGACGGCCTTGTCGAGGATGACGATGAGTTTGA
GCACTTCCAGGATGAGGAAGAGTTCGAGGGCTACGATGGCGGAGACTCCA
AGGATCCGCCCATCGACCAAAAGGTTGAGCCAAAACTGAACATACCAAAC
ATCCCTCTGCACTTCCGCACCCACTGGGACTCCTACTGGATGGAGATGCT
CATGGTGGCAGGGTTGTTGGCCTACTTCGCCAACTTCTTTGCGGGAAAGG
CCAAAAACGCGCGTTTGGCGCAGCTTTGGTTCAGTACCCACAGAGCCCTG
CTGGATGAGAACTTCGCCTTGGTCGGAGACGATGGCAAGGCGGAGAACGA
GAATCCGGGACTGATAAAGGAGAGCGAGAGTCTTTATACTCTCTGGTGCT
CCGGCAGGACCTGTTGCGAAGGCATGCTCGTCGAGCTGAAGATGATCAAG
CGACAGGATCTGGTCTCCTTGGTGGCGGGACTAATGCGCCCACAGCTGGA
CCAGGCCCACATCAAAATTGAACTCACACGCGGTGTAATGGATGCCTTTG
TATTTGCAGTTGGTACCAAAAAGACAATTACCAAGCTCTTCAAAGAGTAT
ACGGATCTGAGCAAGTTCTGTAGTCTAGTCGGCAAGCCGGAGGATCGCTA
CAATGTACCCACCGGCTTTGGCGTGCTCTCCGAAATTCCGGAGGCCACGT
CCGCCATCCTCGAGTCACGTATTATCACTGCACTTAACAAGTACCAAAGC
TATATCGATTACCTGCACATCTCGGACCAGTTCAGTGGGCCCATCCAGCA
GGAAGAGGGTGGCACCCTCAAGCAGCCCGAAACCAAGGCCGTGCTTCTCG
CAGGCTTCAATTTGCCGAAGCACGCCGAAATGGAGACCATTAAGCCGTTG
TTATTGTTGATCTTTTATTTAATGGAGCGTTTAAAGACCTATCGCATGTC
CAAGGAGGGCAAAGCCAAGTCGGACAAAAACCGTCAGCGCGTGGAGGAGG
AGTTCTTGAAGAGCACCCATGCCGCCCGCGCCGAGGCTGCCGCTCAGAGA
CGTGAGGATAAGCGTAAGCAGGAGAAGGAGCGCATTCTGGCCGACGAGGA
CCCAGAGAAGCAGCGCCGTTGGGAGGCTAAGGAGCAGAAGCGCCAGGCCA
AGAGGAATGCGCCCAAGATGAAGAGACTGGCCGTCAAATCCCTGGCAAGC
TTTCTAGACCAT
BO18112.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:28:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17593-RB | 1431 | CG17593-PB | 1..1428 | 17..1444 | 7140 | 100 | Plus |
CG17593-RA | 1431 | CG17593-PA | 1..1428 | 17..1444 | 7140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:28:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17593-RB | 1832 | CG17593-RB | 113..1540 | 17..1444 | 7140 | 100 | Plus |
CG17593-RA | 1674 | CG17593-RA | 113..1540 | 17..1444 | 7140 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:28:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3515714..3516268 | 305..859 | 2775 | 100 | Plus |
2L | 23513712 | 2L | 3516329..3516678 | 859..1208 | 1750 | 100 | Plus |
2L | 23513712 | 2L | 3514984..3515278 | 17..311 | 1475 | 100 | Plus |
2L | 23513712 | 2L | 3516734..3516972 | 1206..1444 | 1195 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:28:34 has no hits.
BO18112.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:47 Download gff for
BO18112.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17593-RA | 1..1431 | 17..1445 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:41:08 Download gff for
BO18112.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17593-RA | 248..1682 | 17..1453 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:59:23 Download gff for
BO18112.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17593-RA | 113..1540 | 17..1446 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:47 Download gff for
BO18112.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17593-RA | 248..1682 | 17..1453 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:02:12 Download gff for
BO18112.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17593-RA | 113..1540 | 17..1446 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:02:12 Download gff for
BO18112.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3514984..3515277 | 17..310 | 100 | -> | Plus |
2L | 3515720..3516268 | 311..859 | 100 | -> | Plus |
2L | 3516330..3516677 | 860..1207 | 100 | -> | Plus |
2L | 3516736..3516972 | 1208..1446 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:59:23 Download gff for
BO18112.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3514984..3515277 | 17..310 | 100 | -> | Plus |
arm_2L | 3515720..3516268 | 311..859 | 100 | -> | Plus |
arm_2L | 3516330..3516677 | 860..1207 | 100 | -> | Plus |
arm_2L | 3516736..3516972 | 1208..1446 | 99 | | Plus |
BO18112.pep Sequence
Translation from 16 to 1462
> BO18112.pep
MRPVFAFLLLALICFASTKSESDFEEDDSDDFAEFDDGNFYAEPAAKNAD
SFSGGAGSSHGESRDDPPAKEPRKQAQNQESDEEDGLVEDDDEFEHFQDE
EEFEGYDGGDSKDPPIDQKVEPKLNIPNIPLHFRTHWDSYWMEMLMVAGL
LAYFANFFAGKAKNARLAQLWFSTHRALLDENFALVGDDGKAENENPGLI
KESESLYTLWCSGRTCCEGMLVELKMIKRQDLVSLVAGLMRPQLDQAHIK
IELTRGVMDAFVFAVGTKKTITKLFKEYTDLSKFCSLVGKPEDRYNVPTG
FGVLSEIPEATSAILESRIITALNKYQSYIDYLHISDQFSGPIQQEEGGT
LKQPETKAVLLAGFNLPKHAEMETIKPLLLLIFYLMERLKTYRMSKEGKA
KSDKNRQRVEEEFLKSTHAARAEAAAQRREDKRKQEKERILADEDPEKQR
RWEAKEQKRQAKRNAPKMKRLAVKSLASFLDH
BO18112.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:06:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17593-PB | 476 | CG17593-PB | 1..476 | 1..476 | 2472 | 100 | Plus |
CG17593-PA | 476 | CG17593-PA | 1..476 | 1..476 | 2472 | 100 | Plus |