Clone BO18115 Report

Search the DGRC for BO18115

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:181
Well:15
Vector:pDNR-Dual
Associated Gene/TranscriptCG33494-RA
Protein status:BO18115.pep: validated full length
Sequenced Size:292

Clone Sequence Records

BO18115.3prime Sequence

290 bp (290 high quality bases) assembled on 2006-10-13

> BO18115.3prime
ATGGTCTAGAAAGCTTGCCCCATAGAGGGGATTGTGCAGCGGGCGGTAAT
CGTAGGATTGTCTGAGTTTCTTATCGGAACTATTCATATTTATTAACCAC
CTTTTTGGATAATAATTATTAATGTGCCAAGAGTTTTTTGTGGCGGGTTC
CGGCTTGCTGTCGACCATAAGAGGATTGAACGTGCTTGGACTCACGGTAA
TTTGAGCAGAAAGATGTCCCAGGAACAGGAACAGTAGATATACTATCCCG
AAAGCCGAGATGACAGTCGCGTGCATGTCGACTGATAACT

BO18115.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG33494-PA 261 CG33494-RA 1..258 276..19 1290 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:19:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG33494-RB 849 CG33494-RB 55..312 276..19 1290 100 Minus
CG33494-RA 751 CG33494-RA 55..312 276..19 1290 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:19:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25494215..25494411 80..276 985 100 Plus
3R 32079331 3R 25494018..25494080 19..81 315 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:19:53 has no hits.

BO18115.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:18:27 Download gff for BO18115.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33494-PA 1..261 15..276 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:05:20 Download gff for BO18115.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33494-RA 51..315 15..284 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:40:39 Download gff for BO18115.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33494-RA 51..315 15..284 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:40:39 Download gff for BO18115.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25494015..25494078 15..79 96 <- Plus
3R 25494215..25494415 80..284 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:05:20 Download gff for BO18115.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21319737..21319800 15..79 96 <- Plus
arm_3R 21319937..21320137 80..284 98   Plus

BO18115.5prime Sequence

290 bp (290 high quality bases) assembled on 2006-10-13

> BO18115.5prime
GAAGTTATCAGTCGACATGCACGCGACTGTCATCTCGGCTTTCGGGATAG
TATATCTACTGTTCCTGTTCCTGGGACATCTTTCTGCTCAAATTACCGTG
AGTCCAAGCACGTTCAATCCTCTTATGGTCGACAGCAAGCCGGAACCCGC
CACAAAAAACTCTTGGCACATTAATAATTATTATCCAAAAAGGTGGTTAA
TAAATATGAATAGTTCCGATAAGAAACTCAGACAATCCTACGATTACCGC
CCGCTGCACAATCCCCTCTATGGGGCAAGCTTTCTAGACC

BO18115.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG33494-PA 261 CG33494-RA 1..258 17..274 1290 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:51:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG33494-RB 849 CG33494-RB 55..312 17..274 1290 100 Plus
CG33494-RA 751 CG33494-RA 55..312 17..274 1290 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:51:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25494215..25494411 213..17 985 100 Minus
3R 32079331 3R 25494018..25494080 274..212 315 100 Minus
Blast to na_te.dros performed on 2015-02-10 20:51:44 has no hits.

BO18115.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:18:27 Download gff for BO18115.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33494-PA 1..261 17..278 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:21:41 Download gff for BO18115.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33494-RA 51..315 9..278 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:28:17 Download gff for BO18115.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33494-RA 51..315 9..278 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:28:17 Download gff for BO18115.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25494015..25494078 214..278 96 <- Minus
3R 25494215..25494415 9..213 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:21:41 Download gff for BO18115.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21319737..21319800 214..278 96 <- Minus
arm_3R 21319937..21320137 9..213 98   Minus

BO18115.complete Sequence

292 bp assembled on 2006-10-11

GenBank Submission: FJ634323

> BO18115.complete
GAAGTTATCAGTCGACATGCACGCGACTGTCATCTCGGCTTTCGGGATAG
TATATCTACTGTTCCTGTTCCTGGGACATCTTTCTGCTCAAATTACCGTG
AGTCCAAGCACGTTCAATCCTCTTATGGTCGACAGCAAGCCGGAACCCGC
CACAAAAAACTCTTGGCACATTAATAATTATTATCCAAAAAGGTGGTTAA
TAAATATGAATAGTTCCGATAAGAAACTCAGACAATCCTACGATTACCGC
CCGCTGCACAATCCCCTCTATGGGGCAAGCTTTCTAGACCAT

BO18115.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:40:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG33494-RB 261 CG33494-PB 1..258 17..274 1290 100 Plus
CG33494-RA 261 CG33494-PA 1..258 17..274 1290 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:40:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG33494-RB 849 CG33494-RB 55..312 17..274 1290 100 Plus
CG33494-RA 751 CG33494-RA 55..312 17..274 1290 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:40:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25494215..25494411 213..17 985 100 Minus
3R 32079331 3R 25494018..25494080 274..212 315 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:40:11 has no hits.

BO18115.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:46:02 Download gff for BO18115.complete
Subject Subject Range Query Range Percent Splice Strand
CG33494-RA 1..261 17..278 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:04:20 Download gff for BO18115.complete
Subject Subject Range Query Range Percent Splice Strand
CG33494-RA 51..315 9..278 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:52:53 Download gff for BO18115.complete
Subject Subject Range Query Range Percent Splice Strand
CG33494-RA 55..312 17..276 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:46:02 Download gff for BO18115.complete
Subject Subject Range Query Range Percent Splice Strand
CG33494-RA 51..315 9..278 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:51 Download gff for BO18115.complete
Subject Subject Range Query Range Percent Splice Strand
CG33494-RA 55..312 17..276 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:51 Download gff for BO18115.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25494016..25494078 214..276 96 <- Minus
3R 25494215..25494411 17..213 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:52:53 Download gff for BO18115.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21319738..21319800 214..276 96 <- Minus
arm_3R 21319937..21320133 17..213 100   Minus

BO18115.pep Sequence

Translation from 16 to 292

> BO18115.pep
MHATVISAFGIVYLLFLFLGHLSAQITVSPSTFNPLMVDSKPEPATKNSW
HINNYYPKRWLINMNSSDKKLRQSYDYRPLHNPLYGASFLDH

BO18115.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:38:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG33494-PB 86 CG33494-PB 1..86 1..86 465 100 Plus
CG33494-PA 86 CG33494-PA 1..86 1..86 465 100 Plus