Clone Sequence Records
BO18115.3prime Sequence
290 bp (290 high quality bases) assembled on 2006-10-13
> BO18115.3prime
ATGGTCTAGAAAGCTTGCCCCATAGAGGGGATTGTGCAGCGGGCGGTAAT
CGTAGGATTGTCTGAGTTTCTTATCGGAACTATTCATATTTATTAACCAC
CTTTTTGGATAATAATTATTAATGTGCCAAGAGTTTTTTGTGGCGGGTTC
CGGCTTGCTGTCGACCATAAGAGGATTGAACGTGCTTGGACTCACGGTAA
TTTGAGCAGAAAGATGTCCCAGGAACAGGAACAGTAGATATACTATCCCG
AAAGCCGAGATGACAGTCGCGTGCATGTCGACTGATAACT
BO18115.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33494-PA | 261 | CG33494-RA | 1..258 | 276..19 | 1290 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:19:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33494-RB | 849 | CG33494-RB | 55..312 | 276..19 | 1290 | 100 | Minus |
CG33494-RA | 751 | CG33494-RA | 55..312 | 276..19 | 1290 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:19:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25494215..25494411 | 80..276 | 985 | 100 | Plus |
3R | 32079331 | 3R | 25494018..25494080 | 19..81 | 315 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:19:53 has no hits.
BO18115.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:18:27 Download gff for
BO18115.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33494-PA | 1..261 | 15..276 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:05:20 Download gff for
BO18115.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33494-RA | 51..315 | 15..284 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:40:39 Download gff for
BO18115.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33494-RA | 51..315 | 15..284 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:40:39 Download gff for
BO18115.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25494015..25494078 | 15..79 | 96 | <- | Plus |
3R | 25494215..25494415 | 80..284 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:05:20 Download gff for
BO18115.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21319737..21319800 | 15..79 | 96 | <- | Plus |
arm_3R | 21319937..21320137 | 80..284 | 98 | | Plus |
BO18115.5prime Sequence
290 bp (290 high quality bases) assembled on 2006-10-13
> BO18115.5prime
GAAGTTATCAGTCGACATGCACGCGACTGTCATCTCGGCTTTCGGGATAG
TATATCTACTGTTCCTGTTCCTGGGACATCTTTCTGCTCAAATTACCGTG
AGTCCAAGCACGTTCAATCCTCTTATGGTCGACAGCAAGCCGGAACCCGC
CACAAAAAACTCTTGGCACATTAATAATTATTATCCAAAAAGGTGGTTAA
TAAATATGAATAGTTCCGATAAGAAACTCAGACAATCCTACGATTACCGC
CCGCTGCACAATCCCCTCTATGGGGCAAGCTTTCTAGACC
BO18115.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33494-PA | 261 | CG33494-RA | 1..258 | 17..274 | 1290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:51:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33494-RB | 849 | CG33494-RB | 55..312 | 17..274 | 1290 | 100 | Plus |
CG33494-RA | 751 | CG33494-RA | 55..312 | 17..274 | 1290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:51:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25494215..25494411 | 213..17 | 985 | 100 | Minus |
3R | 32079331 | 3R | 25494018..25494080 | 274..212 | 315 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:51:44 has no hits.
BO18115.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:18:27 Download gff for
BO18115.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33494-PA | 1..261 | 17..278 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:21:41 Download gff for
BO18115.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33494-RA | 51..315 | 9..278 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:28:17 Download gff for
BO18115.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33494-RA | 51..315 | 9..278 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:28:17 Download gff for
BO18115.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25494015..25494078 | 214..278 | 96 | <- | Minus |
3R | 25494215..25494415 | 9..213 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:21:41 Download gff for
BO18115.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21319737..21319800 | 214..278 | 96 | <- | Minus |
arm_3R | 21319937..21320137 | 9..213 | 98 | | Minus |
BO18115.complete Sequence
292 bp assembled on 2006-10-11
GenBank Submission: FJ634323
> BO18115.complete
GAAGTTATCAGTCGACATGCACGCGACTGTCATCTCGGCTTTCGGGATAG
TATATCTACTGTTCCTGTTCCTGGGACATCTTTCTGCTCAAATTACCGTG
AGTCCAAGCACGTTCAATCCTCTTATGGTCGACAGCAAGCCGGAACCCGC
CACAAAAAACTCTTGGCACATTAATAATTATTATCCAAAAAGGTGGTTAA
TAAATATGAATAGTTCCGATAAGAAACTCAGACAATCCTACGATTACCGC
CCGCTGCACAATCCCCTCTATGGGGCAAGCTTTCTAGACCAT
BO18115.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:40:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33494-RB | 261 | CG33494-PB | 1..258 | 17..274 | 1290 | 100 | Plus |
CG33494-RA | 261 | CG33494-PA | 1..258 | 17..274 | 1290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:40:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33494-RB | 849 | CG33494-RB | 55..312 | 17..274 | 1290 | 100 | Plus |
CG33494-RA | 751 | CG33494-RA | 55..312 | 17..274 | 1290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:40:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25494215..25494411 | 213..17 | 985 | 100 | Minus |
3R | 32079331 | 3R | 25494018..25494080 | 274..212 | 315 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:40:11 has no hits.
BO18115.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:46:02 Download gff for
BO18115.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33494-RA | 1..261 | 17..278 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:04:20 Download gff for
BO18115.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33494-RA | 51..315 | 9..278 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:52:53 Download gff for
BO18115.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33494-RA | 55..312 | 17..276 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:46:02 Download gff for
BO18115.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33494-RA | 51..315 | 9..278 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:51 Download gff for
BO18115.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33494-RA | 55..312 | 17..276 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:51 Download gff for
BO18115.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25494016..25494078 | 214..276 | 96 | <- | Minus |
3R | 25494215..25494411 | 17..213 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:52:53 Download gff for
BO18115.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21319738..21319800 | 214..276 | 96 | <- | Minus |
arm_3R | 21319937..21320133 | 17..213 | 100 | | Minus |
BO18115.pep Sequence
Translation from 16 to 292
> BO18115.pep
MHATVISAFGIVYLLFLFLGHLSAQITVSPSTFNPLMVDSKPEPATKNSW
HINNYYPKRWLINMNSSDKKLRQSYDYRPLHNPLYGASFLDH
BO18115.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:38:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33494-PB | 86 | CG33494-PB | 1..86 | 1..86 | 465 | 100 | Plus |
CG33494-PA | 86 | CG33494-PA | 1..86 | 1..86 | 465 | 100 | Plus |