Clone Sequence Records
BO18116.3prime Sequence
794 bp (728 high quality bases) assembled on 2006-10-13
> BO18116.3prime
ATGGTCTAGAAAGCTTGCTGATTCAATGTTCTTCTTCATCTGAGCACGAA
ATTGTGCAACGGATGCCATTTCGTTTTGATCCTTCTGCTCATCCATTAGA
CTCAGCCAGATTGTTTGAAAGTCTTCCTTCGAGACGATGTCCTTGAATAT
TCGTTCGATTTCATCCTTGCTACGCAATGCCTTAAAATCACTTGGCCATA
GGCCACATAAGGTAGAAAACTCTGGATTAATTACGTCCCCGACACGTGTG
TCATCCATATCCTGTTGAATGGGCGTCTTTTGCGAAGTTTTGTAGTCCCT
GGACCGTGTTTCATCCATATCCTGTTCAATAGGCGCCTTTTGCGGACTAT
TAAAGTCTTTGAAAGGTGCTGCATTCATGTCCTGTTTAATGGACGCCTTT
TTCGCAGTTTTGAATTGCGGTCCCTCTGGGGGTTTTTTCATCAAATCAGC
ACACAACTGACGATAGGCTGTATCCTGGTTGTACGTCACCTTTGGCATGG
GTGTAATGGATCCAATCAAGGGCAGAGATTTCAGGATCGAAAGGAGATCG
CATAGTTCCTCGTATTTCACCTTTTCCGAGCAGCATCCCTCGTCCACAAA
CAACTGAAAGTGGGACGCAGCGTTGCGAATCTTTTCCGCATCTGCCGGAA
TACTTAGCTTGTGCAACACGTTAATGACCTCGTCCAGTGGCAGTTGACGC
TGCCCCTCCGTATCCTTTTTTCCCAAAGCCGAGATCACCTGGTTCATATT
AAAGTCGTCCCGCTCCTGGAGCATTTTGCGCAGCAATATTTAGG
BO18116.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:57:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33490-PA | 1593 | CG33490-RA | 816..1590 | 794..19 | 3840 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:43:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33490-RA | 1745 | CG33490-RA | 878..1652 | 794..19 | 3855 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:43:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11572890..11573656 | 19..785 | 3835 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:43:48 has no hits.
BO18116.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:18:28 Download gff for
BO18116.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33490-PA | 816..1593 | 15..794 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 02:56:47 Download gff for
BO18116.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33490-RA | 878..1657 | 11..794 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:41:56 Download gff for
BO18116.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33490-RA | 878..1657 | 11..794 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:41:56 Download gff for
BO18116.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11572885..11573664 | 11..794 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 02:56:47 Download gff for
BO18116.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11565985..11566764 | 11..794 | 99 | | Plus |
BO18116.5prime Sequence
845 bp (776 high quality bases) assembled on 2006-10-13
> BO18116.5prime
GAAGTTATCAGTCGACATGGCAAACATTGGTCGTTACATAGAAAGAAATC
CGGGAATACGGGCTGCAGGATTGACATCGACCGTGCAATTTAATGGGGCC
AAGGATTGTCTGTTCGTCGTGAGTTTGGAGGAGGAGGCCGAGGATCGTAT
AAGGGCTCTGTGTCGTAGAAGTCGACCCAAACCAGCCAAACGAACTCCCA
AGCTGCCCACCCATCAAATAGGTGACATTCTCAATAATGAAAATCCGGGA
CTCTTTGCCGAGCTTCAAAATAAATTTCGCGAGAATATGTTCCATAAAAA
GCCCGGTTTGGGCGAAGCAAGAGAAACTAACTCAAAACCGAGCTATGTAA
CGAATTTGAGTCACACCTTTGGTAAAATCACGCAATCAAATTGCAATGAT
TCTTTGTACTCTATCGTCCTGCCACCAAAATCAGCCGAGCAGGTCAATCG
AGAGTATGGCGAATACCATGATAAACATATTATCAGTCATAATCACTACT
TTCCCGCCGAACAGATTAATCGCAGATACTCAAAGCCCTTCAATCGTTTT
AATACTTTCGGCTTGCCACCGACTCTCGATCCTTCAGGTATCAAGATGAA
ACACTGCTTGGAGGAGGGTGAGGAGCACTTGAAAATAGTCAAAAAACCCC
AAAAGGACATTGACGATCGCACTAAAGGACCTTTGGGCAAAAAGTATTCG
TGGTATCCCTACCAGATACCCGAAAATATGACCTTTGGTCGCACGCTGCC
TCGGGAAAACGATGTCCGATCTCTGCTAGAATACACCTCACCCTCCATAA
AGTCCGAGAAATTAGCGAATGCCGTGAGTCACCTAAATATGCTGC
BO18116.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:57:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33490-PA | 1593 | CG33490-RA | 1..829 | 17..845 | 4095 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:16:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33490-RA | 1745 | CG33490-RA | 63..891 | 17..845 | 4115 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:16:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11574093..11574601 | 525..17 | 2545 | 100 | Minus |
| 3L | 28110227 | 3L | 11573855..11574032 | 701..524 | 890 | 100 | Minus |
| 3L | 28110227 | 3L | 11573651..11573796 | 845..700 | 700 | 98.6 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:16:56 has no hits.
BO18116.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:18:28 Download gff for
BO18116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33490-PA | 1..829 | 17..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:25:43 Download gff for
BO18116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33490-RA | 55..891 | 9..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:57:18 Download gff for
BO18116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33490-RA | 55..891 | 9..845 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:57:18 Download gff for
BO18116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11573651..11573796 | 700..845 | 98 | <- | Minus |
| 3L | 11573857..11574030 | 526..699 | 100 | <- | Minus |
| 3L | 11574093..11574609 | 9..525 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:25:43 Download gff for
BO18116.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11566751..11566896 | 700..845 | 98 | <- | Minus |
| arm_3L | 11566957..11567130 | 526..699 | 100 | <- | Minus |
| arm_3L | 11567193..11567709 | 9..525 | 99 | | Minus |
BO18116.complete Sequence
1624 bp assembled on 2006-12-18
GenBank Submission: FJ634324
> BO18116.complete
GAAGTTATCAGTCGACATGGCAAACATTGGTCGTTACATAGAAAGAAATC
CGGGAATACGGGCTGCAGGATTGACATCGACCGTGCAATTTAATGGGGCC
AAGGATTGTCTGTTCGTCGTGAGTTTGGAGGAGGAGGCCGAGGATCGTAT
AAGGGCTCTGTGTCGTAGAAGTCGACCCAAACCAGCCAAACGAACTCCCA
AGCTGCCCACCCATCAAATAGGTGACATTCTCAATAATGAAAATCCGGGA
CTCTTTGCCGAGCTTCAAAATAAATTTCGCGAGAATATGTTCCATAAAAA
GCCCGGTTTGGGCGAAGCAAGAGAAACTAACTCAAAACCGAGCTATGTAA
CGAATTTGAGTCACACCTTTGGTAAAATCACGCAATCAAATTGCAATGAT
TCTTTGTACTCTATCGTCCTGCCACCAAAATCAGCCGAGCAGGTCAATCG
AGAGTATGGCGAATACCATGATAAACATATTATCAGTCATAATCACTACT
TTCCCGCCGAACAGATTAATCGCAGATACTCAAAGCCCTTCAATCGTTTT
AATACTTTCGGCTTGCCACCGACTCTCGATCCTTCAGGTATCAAGATGAA
ACACTGCTTGGAGGAGGGTGAGGAGCACTTGAAAATAGTCAAAAAACCCC
AAAAGGACATTGACGATCGCACTAAAGGACCTTTGGGCAAAAAGTATTCG
TGGTATCCCTACCAGATACCCGAAAATATGACCTTTGGTCGCACGCTGCC
TCGGGAAACCGATGTCCGATCTCTGCTAGAATACACCTCACCCTCCATAA
AGTCCGAGAAATTAGCGATTGCCGTGAGTCACCTAAATATGCTGCGCAAA
ATGCTCCAGGAGCGGGACGACTTTAATATGAACCAGGTGATCTCGGCTTT
GGGAAAAAAGGATACGGAGGGGCAGCGTCAACTGCCACTGGACGAGGTCA
TTAACGTGTTGCACAAGCTAAGTATTCCGGCAGATGCGGAAAAGATTCGC
AACGCTGCGTCCCACTTTCAGTTGTTTGTGGACGAGGGATGCTGCTCGGA
AAAGGTGAAATACGAGGAACTATGCGATCTCCTTTCGATCCTGAAATCTC
TGCCCTTGATTGGATCCATTACACCCATGCCAAAGGTGACGTACAACCAG
GATACAGCCTATCGTCAGTTGTGTGCTGATTTGATGAAAAAACCCCCAGA
GGGACCGCAATTCAAAACTGCGAAAAAGGCGTCCATTAAACAGGACATGA
ATGCAGCACCTTTCAAAGACTTTAATAGTCCGCAAAAGGCGCCTATTGAA
CAGGATATGGATGAAACACGGTCCAGGGACTACAAAACTTCGCAAAAGAC
GCCCATTCAACAGGATATGGATGACACACGTGTCGGGGACGTAATTAATC
CAGAGTTTTCTACCTTATGTGGCCTATGGCCAAGTGATTTTAAGGCATTG
CGTAGCAAGGATGAAATCGAACGAATATTCAAGGACATCGTCTCGAAGGA
AGACTTTCAAACAATCTGGCTGAGTCTAATGGATGAGCAGAAGGATCAAA
ACGAAATGGCATCCGTTGCACAATTTCGTGCTCAGATGAAGAAGAACATT
GAATCAGCAAGCTTTCTAGACCAT
BO18116.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:54:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33490-RA | 1593 | CG33490-PA | 1..1590 | 17..1606 | 7950 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:54:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33490-RA | 1745 | CG33490-RA | 63..1652 | 17..1606 | 7950 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:54:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11572890..11573796 | 1606..700 | 4535 | 100 | Minus |
| 3L | 28110227 | 3L | 11574093..11574601 | 525..17 | 2545 | 100 | Minus |
| 3L | 28110227 | 3L | 11573855..11574032 | 701..524 | 890 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:54:19 has no hits.
BO18116.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:12:43 Download gff for
BO18116.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33490-RA | 1..1593 | 17..1610 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:31:10 Download gff for
BO18116.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33490-RA | 55..1657 | 9..1614 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:58:28 Download gff for
BO18116.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33490-RA | 63..1652 | 17..1608 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:12:43 Download gff for
BO18116.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33490-RA | 55..1657 | 9..1614 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:57:41 Download gff for
BO18116.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33490-RA | 63..1652 | 17..1608 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:57:41 Download gff for
BO18116.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11572888..11573796 | 700..1608 | 99 | <- | Minus |
| 3L | 11573857..11574030 | 526..699 | 100 | <- | Minus |
| 3L | 11574093..11574601 | 17..525 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:58:28 Download gff for
BO18116.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11565988..11566896 | 700..1608 | 99 | <- | Minus |
| arm_3L | 11566957..11567130 | 526..699 | 100 | <- | Minus |
| arm_3L | 11567193..11567701 | 17..525 | 100 | | Minus |
BO18116.pep Sequence
Translation from 16 to 1624
> BO18116.pep
MANIGRYIERNPGIRAAGLTSTVQFNGAKDCLFVVSLEEEAEDRIRALCR
RSRPKPAKRTPKLPTHQIGDILNNENPGLFAELQNKFRENMFHKKPGLGE
ARETNSKPSYVTNLSHTFGKITQSNCNDSLYSIVLPPKSAEQVNREYGEY
HDKHIISHNHYFPAEQINRRYSKPFNRFNTFGLPPTLDPSGIKMKHCLEE
GEEHLKIVKKPQKDIDDRTKGPLGKKYSWYPYQIPENMTFGRTLPRETDV
RSLLEYTSPSIKSEKLAIAVSHLNMLRKMLQERDDFNMNQVISALGKKDT
EGQRQLPLDEVINVLHKLSIPADAEKIRNAASHFQLFVDEGCCSEKVKYE
ELCDLLSILKSLPLIGSITPMPKVTYNQDTAYRQLCADLMKKPPEGPQFK
TAKKASIKQDMNAAPFKDFNSPQKAPIEQDMDETRSRDYKTSQKTPIQQD
MDDTRVGDVINPEFSTLCGLWPSDFKALRSKDEIERIFKDIVSKEDFQTI
WLSLMDEQKDQNEMASVAQFRAQMKKNIESASFLDH
BO18116.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:30:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33490-PA | 530 | CG33490-PA | 1..530 | 1..530 | 2787 | 100 | Plus |
| CG33489-PB | 497 | CG33489-PB | 1..497 | 1..532 | 961 | 40 | Plus |
| CG33489-PA | 497 | CG33489-PA | 1..497 | 1..532 | 961 | 40 | Plus |
| CG32086-PA | 491 | CG32086-PA | 1..490 | 1..532 | 911 | 40.2 | Plus |
| CG32086-PB | 475 | CG32086-PB | 1..474 | 1..532 | 864 | 39.4 | Plus |
