Clone Sequence Records
BO18117.3prime Sequence
778 bp (723 high quality bases) assembled on 2006-10-13
> BO18117.3prime
ATGGTCTAGAAAGCTTGCTGCTGTGGAGACACCATTGATCATATTCAAAC
GCTGCAGATTATCGATGCGTTGCAGGACCGATGGCCGTAGACGATGCCAC
ATGAGGTAGCACTGGTCTACATAGGGAAATTCGTAATCATCCGAAAAAAG
TTTGAGCAAAGCGGCCCTCATCGGTAGTCCGTAACCTCGGCGATTGACAT
AGGCATCGGCGGCGTACTCAAAGTGACGTATACAAAAGAACACTATCCAA
GTGGAAATGTCATGATAGATGGGCATTAGATACTTGTACACCAGCCAAAA
GCCCACCGAACTGGGATAGAATGTCGTAAAGCCCGCGGCCGCATACAACG
TTATCCACCTGTTACAGATTCCGAAGAGTAGTAGATATATCAAGAGATAA
AAGTAAATCAATGCCAGTCCCTTTGCCACATGCCACAGTTGCCAATGGGC
CAGTTGATGGGCCACAAAGGCAGCCAACTGCTCATCATTCAGACCAGCAC
CCATCTGACCCCAGTCGAAATCATCGGAGCTAAATCCACGGTTCCACTTC
AGATTATCGTGGATATCTAAACGCAGGCAACAGCAGCATCCCATTACCCA
GGCCGTCGGACGACCCACATGGAAGGTGTGAACCATATAGACCCGGCCGG
GAAAATTAAAGTCGTCCAATACCGCTTTCAGGCTATTATCCATATCGGTA
CTATTCATTTTGCGACTCTTGCCCAAACAGGGCACTCCCAACAGTCCAAC
AAATGCCAATACCAGTACGGACAAACCC
BO18117.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7573-PA | 1530 | CG7573-RA | 768..1527 | 778..19 | 3775 | 99.8 | Minus |
CG7573-PB | 1434 | CG7573-RB | 672..1431 | 778..19 | 3775 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:27:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7573-RB | 1523 | CG7573-RB | 722..1481 | 778..19 | 3785 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:27:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11312596..11313355 | 778..19 | 3785 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:27:45 has no hits.
BO18117.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:18:29 Download gff for
BO18117.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7573-PB | 672..1434 | 16..778 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:41:04 Download gff for
BO18117.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7573-RB | 722..1489 | 12..778 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:57:26 Download gff for
BO18117.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7573-RB | 722..1489 | 12..778 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:57:26 Download gff for
BO18117.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11312596..11313363 | 12..778 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:41:04 Download gff for
BO18117.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11305696..11306463 | 12..778 | 99 | | Minus |
BO18117.5prime Sequence
834 bp (700 high quality bases) assembled on 2006-10-13
> BO18117.5prime
GAAGTTATCAGTCGACATGAACTCATTCGCACTTTATCAAGATCCTTTGC
GTGGTGAGGTCCTAAAAATATCGGGAAATCAGATCGGCATGAGTGTGGTT
CCCCGGAAACTTAGTTTCTCGGATCCGATTCTTTTGCGGCACATCCTCTG
TCTGGTGATAGTGGTGCACAACAGTTTTCATCTCATCCTCTGTTGCAGGC
AGTTGAAATTGTGCAAAAGGACTTCCGTTCCGCCGAAGCAAATGGAGGGC
ATTTTGTCGCAAGAAGCCTTTCAGGCCTCCAAGGATAAACAGCTTCATGC
CTCATCCCTTGAGATATTCAATATAGCAATAGATACATTATATAGCTGCC
TTGATCTGTATCTTTGCACTCTGGCTTTCCTCTGGAAATTGACGGTAGGT
TGGTATCACTATGCGGACAGCACTTGGCTGAATGTGACATTTATGACTGT
ATTTTCAACGTACTTGGTTGTCCGGAAGTTGCCATCACTGTTTTACGAGA
AATTGGTCCTGGATCCGCGATACAATGTGGATCCTGAAAAGACGCCGCCC
TTGTTGGGTTTGATTTGTGCGCTGGTTTTTGTCGTCGTTTTCCTACAGGT
TGCCGTCATTCCGCTGACTGCGATTTTCATGGCTATTCATATGTTAAGCG
AGTGGTATTTCACACTATTCGTTTGGCTGGGTCTGGTGGGTTTGTCCGTA
CTGGTATTGGCATTTGTTGGACTGTTTGGAGTGCCCTGTTTGGGCAAGAG
TCGCAAAATGATAGTACCGATATGGAATATAGCCTGAAAGCGGTATTGGA
AGACTTTAATTTTCCCCGCCGGGTCTATATGGTT
BO18117.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7573-PB | 1434 | CG7573-RB | 1..745 | 17..761 | 3725 | 100 | Plus |
CG7573-PA | 1530 | CG7573-RA | 121..841 | 41..761 | 3605 | 100 | Plus |
CG7573-PB | 1434 | CG7573-RB | 746..819 | 761..834 | 270 | 94.5 | Plus |
CG7573-PA | 1530 | CG7573-RA | 842..915 | 761..834 | 270 | 94.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:43:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7573-RB | 1523 | CG7573-RB | 51..869 | 17..834 | 4010 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:43:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11312125..11312452 | 272..599 | 1640 | 100 | Plus |
3L | 28110227 | 3L | 11311797..11312055 | 17..275 | 1295 | 100 | Plus |
3L | 28110227 | 3L | 11312504..11312743 | 596..834 | 1090 | 97.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 17:43:20 has no hits.
BO18117.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:18:30 Download gff for
BO18117.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7573-PB | 1..819 | 17..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:40:57 Download gff for
BO18117.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7573-RB | 51..869 | 17..834 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:57:30 Download gff for
BO18117.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7573-RB | 51..869 | 17..834 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:57:30 Download gff for
BO18117.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11312128..11312451 | 275..598 | 100 | -> | Plus |
3L | 11312507..11312743 | 599..834 | 97 | | Plus |
3L | 11311797..11312054 | 17..274 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:40:57 Download gff for
BO18117.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11304897..11305154 | 17..274 | 100 | -> | Plus |
arm_3L | 11305228..11305551 | 275..598 | 100 | -> | Plus |
arm_3L | 11305607..11305843 | 599..834 | 97 | | Plus |
BO18117.complete Sequence
1465 bp assembled on 2006-10-11
GenBank Submission: FJ634325
> BO18117.complete
GAAGTTATCAGTCGACATGAACTCATTCGCACTTTATCAAGATCCTTTGC
GTGGTGAGGTCCTAAAAATATCGGGAAATCAGATCGGCATGAGTGTGGTT
CCCCGGAAACTTAGTTTCTCGGATCCGATTCTTTTGCGGCACATCCTCTG
TCTGGTGATAGTGGTGCACAACAGTTTTCATCTCATCCTCTGTTGCAGGC
AGTTGAAATTGTGCAAAAGGACTTCCGTTCCGCCGAAGCAAATGGAGGGC
ATTTTGTCGCAAGAAGCCTTTCAGGCCTCCAAGGATAAACAGCTTCATGC
CTCATCCCTTGAGATATTCAATATAGCAATAGATACATTATATAGCTGCC
TTGATCTGTATCTTTGCACTCTGGCTTTCCTCTGGAAATTGACGGTAGGT
TGGTATCACTATGCGGACAGCACTTGGCTGAATGTGACATTTATGACTGT
ATTTTCAACGTACTTGGTTGTCCGGAAGTTGCCATCACTGTTTTACGAGA
AATTGGTCCTGGATCCGCGATACAATGTGGATCCTGAAAAGACGCCGCCC
TTGTTGGGTTTGATTTGTGCGCTGGTTTTTGTCGTCGTTTTCCTACAGGT
TGCCGTCATTCCGCTGACTGCGATTTTCATGGCTATTCATATGTTAAGCG
AGTGGTATTTCACACTATTCGTTTGGCTGGGTCTGGTGGGTTTGTCCGTA
CTGGTATTGGCATTTGTTGGACTGTTTGGAGTGCCCTGTTTGGGCAAGAG
TCGCAAAATGAATAGTACCGATATGGATAATAGCCTGAAAGCGGTATTGG
ACGACTTTAATTTTCCCGGCCGGGTCTATATGGTTCACACCTTCCATGTG
GGTCGTCCGACGGCCTGGGTAATGGGATGCTGCTGTTGCCTGCGTTTAGA
TATCCACGATAATCTGAAGTGGAACCGTGGATTTAGCTCCGATGATTTCG
ACTGGGGTCAGATGGGTGCTGGTCTGAATGATGAGCAGTTGGCTGCCTTT
GTGGCCCATCAACTGGCCCATTGGCAACTGTGGCATGTGGCAAAGGGACT
GGCATTGATTTACTTTTATCTCTTGATATATCTACTACTCTTCGGAATCT
GTAACAGGTGGATAACGTTGTATGCGGCCGCGGGCTTTACGACATTCTAT
CCCAGTTCGGTGGGCTTTTGGCTGGTGTACAAGTATCTAATGCCCATCTA
TCATGACATTTCCACTTGGATAGTGTTCTTTTGTATACGTCACTTTGAGT
ACGCCGCCGATGCCTATGTCAATCGCCGAGGTTACGGACTACCGATGAGG
GCCGCTTTGCTCAAACTTTTTTCGGATGATTACGAATTTCCCTATGTAGA
CCAGTGCTACCTCATGTGGCATCGTCTACGGCCATCGGTCCTGCAACGCA
TCGATAATCTGCAGCGTTTGAATATGATCAATGGTGTCTCCACAGCAGCA
AGCTTTCTAGACCAT
BO18117.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:13:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7573-RB | 1434 | CG7573-PB | 1..1431 | 17..1447 | 7155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:13:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7573-RB | 1523 | CG7573-RB | 51..1481 | 17..1447 | 7155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:13:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11312504..11313355 | 596..1447 | 4260 | 100 | Plus |
3L | 28110227 | 3L | 11312125..11312452 | 272..599 | 1640 | 100 | Plus |
3L | 28110227 | 3L | 11311797..11312055 | 17..275 | 1295 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:13:49 has no hits.
BO18117.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:48 Download gff for
BO18117.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7573-RB | 1..1434 | 17..1450 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:41:09 Download gff for
BO18117.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7573-RB | 51..1489 | 17..1454 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:09:22 Download gff for
BO18117.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7573-RB | 51..1481 | 17..1449 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:49 Download gff for
BO18117.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7573-RB | 35..1473 | 17..1454 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:06:14 Download gff for
BO18117.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7573-RB | 51..1481 | 17..1449 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:06:14 Download gff for
BO18117.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11311797..11312054 | 17..274 | 100 | -> | Plus |
3L | 11312128..11312451 | 275..598 | 100 | -> | Plus |
3L | 11312507..11313355 | 599..1449 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:09:22 Download gff for
BO18117.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11304897..11305154 | 17..274 | 100 | -> | Plus |
arm_3L | 11305228..11305551 | 275..598 | 100 | -> | Plus |
arm_3L | 11305607..11306455 | 599..1449 | 99 | | Plus |
BO18117.pep Sequence
Translation from 16 to 1465
> BO18117.pep
MNSFALYQDPLRGEVLKISGNQIGMSVVPRKLSFSDPILLRHILCLVIVV
HNSFHLILCCRQLKLCKRTSVPPKQMEGILSQEAFQASKDKQLHASSLEI
FNIAIDTLYSCLDLYLCTLAFLWKLTVGWYHYADSTWLNVTFMTVFSTYL
VVRKLPSLFYEKLVLDPRYNVDPEKTPPLLGLICALVFVVVFLQVAVIPL
TAIFMAIHMLSEWYFTLFVWLGLVGLSVLVLAFVGLFGVPCLGKSRKMNS
TDMDNSLKAVLDDFNFPGRVYMVHTFHVGRPTAWVMGCCCCLRLDIHDNL
KWNRGFSSDDFDWGQMGAGLNDEQLAAFVAHQLAHWQLWHVAKGLALIYF
YLLIYLLLFGICNRWITLYAAAGFTTFYPSSVGFWLVYKYLMPIYHDIST
WIVFFCIRHFEYAADAYVNRRGYGLPMRAALLKLFSDDYEFPYVDQCYLM
WHRLRPSVLQRIDNLQRLNMINGVSTAASFLDH
BO18117.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:06:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7573-PB | 477 | CG7573-PB | 1..477 | 1..477 | 2564 | 100 | Plus |
ste24c-PC | 456 | CG9002-PC | 11..448 | 36..470 | 595 | 30.2 | Plus |
ste24c-PD | 456 | CG9002-PD | 11..448 | 36..470 | 595 | 30.2 | Plus |
ste24c-PA | 456 | CG9002-PA | 11..448 | 36..470 | 595 | 30.2 | Plus |
ste24b-PA | 447 | CG9001-PA | 6..443 | 34..466 | 444 | 26.8 | Plus |