Clone BO18117 Report

Search the DGRC for BO18117

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:181
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptCG7573-RB
Protein status:BO18117.pep: validated full length
Sequenced Size:1465

Clone Sequence Records

BO18117.3prime Sequence

778 bp (723 high quality bases) assembled on 2006-10-13

> BO18117.3prime
ATGGTCTAGAAAGCTTGCTGCTGTGGAGACACCATTGATCATATTCAAAC
GCTGCAGATTATCGATGCGTTGCAGGACCGATGGCCGTAGACGATGCCAC
ATGAGGTAGCACTGGTCTACATAGGGAAATTCGTAATCATCCGAAAAAAG
TTTGAGCAAAGCGGCCCTCATCGGTAGTCCGTAACCTCGGCGATTGACAT
AGGCATCGGCGGCGTACTCAAAGTGACGTATACAAAAGAACACTATCCAA
GTGGAAATGTCATGATAGATGGGCATTAGATACTTGTACACCAGCCAAAA
GCCCACCGAACTGGGATAGAATGTCGTAAAGCCCGCGGCCGCATACAACG
TTATCCACCTGTTACAGATTCCGAAGAGTAGTAGATATATCAAGAGATAA
AAGTAAATCAATGCCAGTCCCTTTGCCACATGCCACAGTTGCCAATGGGC
CAGTTGATGGGCCACAAAGGCAGCCAACTGCTCATCATTCAGACCAGCAC
CCATCTGACCCCAGTCGAAATCATCGGAGCTAAATCCACGGTTCCACTTC
AGATTATCGTGGATATCTAAACGCAGGCAACAGCAGCATCCCATTACCCA
GGCCGTCGGACGACCCACATGGAAGGTGTGAACCATATAGACCCGGCCGG
GAAAATTAAAGTCGTCCAATACCGCTTTCAGGCTATTATCCATATCGGTA
CTATTCATTTTGCGACTCTTGCCCAAACAGGGCACTCCCAACAGTCCAAC
AAATGCCAATACCAGTACGGACAAACCC

BO18117.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG7573-PA 1530 CG7573-RA 768..1527 778..19 3775 99.8 Minus
CG7573-PB 1434 CG7573-RB 672..1431 778..19 3775 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:27:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG7573-RB 1523 CG7573-RB 722..1481 778..19 3785 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:27:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11312596..11313355 778..19 3785 99.9 Minus
Blast to na_te.dros performed on 2015-02-10 17:27:45 has no hits.

BO18117.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:18:29 Download gff for BO18117.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7573-PB 672..1434 16..778 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:41:04 Download gff for BO18117.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7573-RB 722..1489 12..778 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:57:26 Download gff for BO18117.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7573-RB 722..1489 12..778 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:57:26 Download gff for BO18117.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 11312596..11313363 12..778 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:41:04 Download gff for BO18117.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11305696..11306463 12..778 99   Minus

BO18117.5prime Sequence

834 bp (700 high quality bases) assembled on 2006-10-13

> BO18117.5prime
GAAGTTATCAGTCGACATGAACTCATTCGCACTTTATCAAGATCCTTTGC
GTGGTGAGGTCCTAAAAATATCGGGAAATCAGATCGGCATGAGTGTGGTT
CCCCGGAAACTTAGTTTCTCGGATCCGATTCTTTTGCGGCACATCCTCTG
TCTGGTGATAGTGGTGCACAACAGTTTTCATCTCATCCTCTGTTGCAGGC
AGTTGAAATTGTGCAAAAGGACTTCCGTTCCGCCGAAGCAAATGGAGGGC
ATTTTGTCGCAAGAAGCCTTTCAGGCCTCCAAGGATAAACAGCTTCATGC
CTCATCCCTTGAGATATTCAATATAGCAATAGATACATTATATAGCTGCC
TTGATCTGTATCTTTGCACTCTGGCTTTCCTCTGGAAATTGACGGTAGGT
TGGTATCACTATGCGGACAGCACTTGGCTGAATGTGACATTTATGACTGT
ATTTTCAACGTACTTGGTTGTCCGGAAGTTGCCATCACTGTTTTACGAGA
AATTGGTCCTGGATCCGCGATACAATGTGGATCCTGAAAAGACGCCGCCC
TTGTTGGGTTTGATTTGTGCGCTGGTTTTTGTCGTCGTTTTCCTACAGGT
TGCCGTCATTCCGCTGACTGCGATTTTCATGGCTATTCATATGTTAAGCG
AGTGGTATTTCACACTATTCGTTTGGCTGGGTCTGGTGGGTTTGTCCGTA
CTGGTATTGGCATTTGTTGGACTGTTTGGAGTGCCCTGTTTGGGCAAGAG
TCGCAAAATGATAGTACCGATATGGAATATAGCCTGAAAGCGGTATTGGA
AGACTTTAATTTTCCCCGCCGGGTCTATATGGTT

BO18117.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG7573-PB 1434 CG7573-RB 1..745 17..761 3725 100 Plus
CG7573-PA 1530 CG7573-RA 121..841 41..761 3605 100 Plus
CG7573-PB 1434 CG7573-RB 746..819 761..834 270 94.5 Plus
CG7573-PA 1530 CG7573-RA 842..915 761..834 270 94.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:43:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG7573-RB 1523 CG7573-RB 51..869 17..834 4010 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:43:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11312125..11312452 272..599 1640 100 Plus
3L 28110227 3L 11311797..11312055 17..275 1295 100 Plus
3L 28110227 3L 11312504..11312743 596..834 1090 97.9 Plus
Blast to na_te.dros performed on 2015-02-12 17:43:20 has no hits.

BO18117.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:18:30 Download gff for BO18117.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7573-PB 1..819 17..834 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:40:57 Download gff for BO18117.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7573-RB 51..869 17..834 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:57:30 Download gff for BO18117.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7573-RB 51..869 17..834 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 19:57:30 Download gff for BO18117.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 11312128..11312451 275..598 100 -> Plus
3L 11312507..11312743 599..834 97   Plus
3L 11311797..11312054 17..274 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:40:57 Download gff for BO18117.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11304897..11305154 17..274 100 -> Plus
arm_3L 11305228..11305551 275..598 100 -> Plus
arm_3L 11305607..11305843 599..834 97   Plus

BO18117.complete Sequence

1465 bp assembled on 2006-10-11

GenBank Submission: FJ634325

> BO18117.complete
GAAGTTATCAGTCGACATGAACTCATTCGCACTTTATCAAGATCCTTTGC
GTGGTGAGGTCCTAAAAATATCGGGAAATCAGATCGGCATGAGTGTGGTT
CCCCGGAAACTTAGTTTCTCGGATCCGATTCTTTTGCGGCACATCCTCTG
TCTGGTGATAGTGGTGCACAACAGTTTTCATCTCATCCTCTGTTGCAGGC
AGTTGAAATTGTGCAAAAGGACTTCCGTTCCGCCGAAGCAAATGGAGGGC
ATTTTGTCGCAAGAAGCCTTTCAGGCCTCCAAGGATAAACAGCTTCATGC
CTCATCCCTTGAGATATTCAATATAGCAATAGATACATTATATAGCTGCC
TTGATCTGTATCTTTGCACTCTGGCTTTCCTCTGGAAATTGACGGTAGGT
TGGTATCACTATGCGGACAGCACTTGGCTGAATGTGACATTTATGACTGT
ATTTTCAACGTACTTGGTTGTCCGGAAGTTGCCATCACTGTTTTACGAGA
AATTGGTCCTGGATCCGCGATACAATGTGGATCCTGAAAAGACGCCGCCC
TTGTTGGGTTTGATTTGTGCGCTGGTTTTTGTCGTCGTTTTCCTACAGGT
TGCCGTCATTCCGCTGACTGCGATTTTCATGGCTATTCATATGTTAAGCG
AGTGGTATTTCACACTATTCGTTTGGCTGGGTCTGGTGGGTTTGTCCGTA
CTGGTATTGGCATTTGTTGGACTGTTTGGAGTGCCCTGTTTGGGCAAGAG
TCGCAAAATGAATAGTACCGATATGGATAATAGCCTGAAAGCGGTATTGG
ACGACTTTAATTTTCCCGGCCGGGTCTATATGGTTCACACCTTCCATGTG
GGTCGTCCGACGGCCTGGGTAATGGGATGCTGCTGTTGCCTGCGTTTAGA
TATCCACGATAATCTGAAGTGGAACCGTGGATTTAGCTCCGATGATTTCG
ACTGGGGTCAGATGGGTGCTGGTCTGAATGATGAGCAGTTGGCTGCCTTT
GTGGCCCATCAACTGGCCCATTGGCAACTGTGGCATGTGGCAAAGGGACT
GGCATTGATTTACTTTTATCTCTTGATATATCTACTACTCTTCGGAATCT
GTAACAGGTGGATAACGTTGTATGCGGCCGCGGGCTTTACGACATTCTAT
CCCAGTTCGGTGGGCTTTTGGCTGGTGTACAAGTATCTAATGCCCATCTA
TCATGACATTTCCACTTGGATAGTGTTCTTTTGTATACGTCACTTTGAGT
ACGCCGCCGATGCCTATGTCAATCGCCGAGGTTACGGACTACCGATGAGG
GCCGCTTTGCTCAAACTTTTTTCGGATGATTACGAATTTCCCTATGTAGA
CCAGTGCTACCTCATGTGGCATCGTCTACGGCCATCGGTCCTGCAACGCA
TCGATAATCTGCAGCGTTTGAATATGATCAATGGTGTCTCCACAGCAGCA
AGCTTTCTAGACCAT

BO18117.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:13:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG7573-RB 1434 CG7573-PB 1..1431 17..1447 7155 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:13:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG7573-RB 1523 CG7573-RB 51..1481 17..1447 7155 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:13:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11312504..11313355 596..1447 4260 100 Plus
3L 28110227 3L 11312125..11312452 272..599 1640 100 Plus
3L 28110227 3L 11311797..11312055 17..275 1295 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:13:49 has no hits.

BO18117.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:48 Download gff for BO18117.complete
Subject Subject Range Query Range Percent Splice Strand
CG7573-RB 1..1434 17..1450 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:41:09 Download gff for BO18117.complete
Subject Subject Range Query Range Percent Splice Strand
CG7573-RB 51..1489 17..1454 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:09:22 Download gff for BO18117.complete
Subject Subject Range Query Range Percent Splice Strand
CG7573-RB 51..1481 17..1449 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:49 Download gff for BO18117.complete
Subject Subject Range Query Range Percent Splice Strand
CG7573-RB 35..1473 17..1454 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:06:14 Download gff for BO18117.complete
Subject Subject Range Query Range Percent Splice Strand
CG7573-RB 51..1481 17..1449 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:06:14 Download gff for BO18117.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11311797..11312054 17..274 100 -> Plus
3L 11312128..11312451 275..598 100 -> Plus
3L 11312507..11313355 599..1449 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:09:22 Download gff for BO18117.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11304897..11305154 17..274 100 -> Plus
arm_3L 11305228..11305551 275..598 100 -> Plus
arm_3L 11305607..11306455 599..1449 99   Plus

BO18117.pep Sequence

Translation from 16 to 1465

> BO18117.pep
MNSFALYQDPLRGEVLKISGNQIGMSVVPRKLSFSDPILLRHILCLVIVV
HNSFHLILCCRQLKLCKRTSVPPKQMEGILSQEAFQASKDKQLHASSLEI
FNIAIDTLYSCLDLYLCTLAFLWKLTVGWYHYADSTWLNVTFMTVFSTYL
VVRKLPSLFYEKLVLDPRYNVDPEKTPPLLGLICALVFVVVFLQVAVIPL
TAIFMAIHMLSEWYFTLFVWLGLVGLSVLVLAFVGLFGVPCLGKSRKMNS
TDMDNSLKAVLDDFNFPGRVYMVHTFHVGRPTAWVMGCCCCLRLDIHDNL
KWNRGFSSDDFDWGQMGAGLNDEQLAAFVAHQLAHWQLWHVAKGLALIYF
YLLIYLLLFGICNRWITLYAAAGFTTFYPSSVGFWLVYKYLMPIYHDIST
WIVFFCIRHFEYAADAYVNRRGYGLPMRAALLKLFSDDYEFPYVDQCYLM
WHRLRPSVLQRIDNLQRLNMINGVSTAASFLDH

BO18117.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:06:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG7573-PB 477 CG7573-PB 1..477 1..477 2564 100 Plus
ste24c-PC 456 CG9002-PC 11..448 36..470 595 30.2 Plus
ste24c-PD 456 CG9002-PD 11..448 36..470 595 30.2 Plus
ste24c-PA 456 CG9002-PA 11..448 36..470 595 30.2 Plus
ste24b-PA 447 CG9001-PA 6..443 34..466 444 26.8 Plus