Clone BO18122 Report

Search the DGRC for BO18122

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:181
Well:22
Vector:pDNR-Dual
Associated Gene/TranscriptEst-P-RA
Protein status:BO18122.pep: validated full length
Sequenced Size:1666

Clone Sequence Records

BO18122.3prime Sequence

797 bp (721 high quality bases) assembled on 2006-10-13

> BO18122.3prime
ATGGTCTAGAAAGCTTGCGGGAAACCGAGCATATTCCTCGTTTTTACAAG
CGTTTCGTGAAATACGCAGCACTTGATATTCCTTGCTGTTCACATTATTT
TGGAAATTACATTCTCCAAATGTTAATGTTCCCTTATCGTTGAGTGCGAA
ATCCTCCAGCATACCTATAAACTTTTTTGAAATAACTTCTTCATCCGGAC
GAATGCCGGTACGGTATGCAGCTGTATTGAAAATCAAGAAAAAGTCATCT
CCGTGGACAGTACCAAAATGTACATCTGTTCGATTGGAAAGCAATTGACC
CACTCCGGAATCGGTAGGATTATCGTAGACAAAAGAATAAACCGGACTTT
TGCCATACTTTCGGTGAAGATCTATTGCACTTGGCACGCTATTCTTGAAA
AGAACATCAGTAAACATTCGCTGCACGTTCCAATAACTTTCCACACTGAA
TCGCCGATCTGCTAGATACTGCTGCCTGAGATCAAATGAAAGATCATCCA
TATCTTTGATGGTTTTCTTGGCGTCCCGATAGAAGAGCAAGTATGGTGCC
CAATCAAACCATCGATCATTGAGTAGGTCAATCCAACTCTCGCCAGTTAA
TTTGTTTCTTTCCAACAGCTGAGCAGCGTTGTATCCCCCGTCCTCAGTGG
TGTACGTCACAGCCCAAGGGACTTGGGCAAACTTCCCGCTCTTAATCACT
GCTCTTGGGTCCTCGGTTAGAAAGGCGTCTGGGTGCATCTGACGGCTCCA
CAACAGGTCCAAAAGCACTGAAGGGTACATAGGAAAACACAAGGAAG

BO18122.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:58:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG17148-PA 1635 Est-P-RA 855..1632 797..19 3855 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:48:14
Subject Length Description Subject Range Query Range Score Percent Strand
Est-P-RA 1740 CG17148-RA 860..1637 797..19 3870 99.9 Minus
thoc6-RC 2869 CG5632-RC 1439..1973 262..797 2655 99.8 Plus
thoc6-RC 2869 CG5632-RC 1140..1385 19..264 1230 100 Plus
thoc6-RA 1533 CG5632-RA 1140..1385 19..264 1230 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:48:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12191592..12192126 797..262 2630 99.8 Minus
3L 28110227 3L 12192180..12192425 264..19 1230 100 Minus
Blast to na_te.dros performed on 2015-02-11 15:48:12 has no hits.

BO18122.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:18:34 Download gff for BO18122.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17148-PA 855..1635 15..797 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:15:45 Download gff for BO18122.3prime
Subject Subject Range Query Range Percent Splice Strand
Est-P-RA 860..1641 14..797 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:42:39 Download gff for BO18122.3prime
Subject Subject Range Query Range Percent Splice Strand
Est-P-RA 860..1641 14..797 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:42:39 Download gff for BO18122.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 12191592..12192124 264..797 99 -> Minus
3L 12192181..12192429 14..263 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:15:45 Download gff for BO18122.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12184692..12185224 264..797 99 -> Minus
arm_3L 12185281..12185529 14..263 99   Minus

BO18122.5prime Sequence

898 bp (794 high quality bases) assembled on 2006-10-13

> BO18122.5prime
GAAGTTATCAGTCGACATGAGTATATTCAAACGGCTGTTGTGCCTGACTT
TGCTGTGGATAGCAGCTTTAGAATCTGAAGCTGATCCCTTGATTGTTGAG
ATAACAAATGGAAAAATCCGTGGCAAAGATAATGGGTTGTACTACAGCTA
CGAATCGATTCCCAATGCCGAGCATCCAACTGGTGCCCTCCGTTTTGAAG
CACCTCAGCCGTATAGTCATCATTGGACTGATGTTTTCAATGCCACGCAG
TCTCCAGTTGAGTGCATGCAGTGGAATCAGTTTATAAACGAAAACAATAA
GCTGATGGGTGATGAGGATTGCTTAACGGTAAGCATCTATAAGCCAAAGA
AACCCAATCGGAGCAGCTTTCCTGTCGTAGTACTCCTGCATGGAGGTGCT
TTCATGTTCGGTAGTGGATCCATATATGGACACGACTCCATTATGCGTGA
GGGAACTTTGCTTGTGGTAAAAATAAGTTTTGGTCTTGGACCATTGGGTT
TTGCAAGTACCGGCGATAGACACTTGCCGGGAAACTATGGTCTAAAGGAT
CAACGTCTGGCCCTACAATGGATCAAGAAGAACATTGCTCACTTTGGTGG
AATGCCAGATAATATTGTGCTCATTGGTCACTCTGCAGGCGGTGCTTCGG
CTCATTTGCAGCTGTTGCACGAGGATTTCAAACATTTGGCCAAAGGAGCG
ATTTCGGTGAGCGGCAATGCATTGGATCCTTGGGTCATACAGCAGGGTGG
ACGACGACGTGCATTTGAACTGGGTCGTATTGTCGGTTGTGGACACACAA
ATGTCTCCGCAGAACTCAAGGACTGCTTGAAGTCTAAGCCGGCTAGCGAT
ATAGTCTCTGCTGTCCGAAGCTTCCTTGTGTTTTCCTATGTTACCTTC

BO18122.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:58:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG17148-PA 1635 Est-P-RA 1..875 17..891 4375 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:14:40
Subject Length Description Subject Range Query Range Score Percent Strand
thoc6-RC 2869 CG5632-RC 1946..2828 898..16 4385 99.8 Minus
Est-P-RA 1740 CG17148-RA 5..887 16..898 4385 99.8 Plus
Est-6-RB 1837 CG6917-RB 174..808 140..774 400 71.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:14:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12190737..12191619 16..898 4385 99.8 Plus
3L 28110227 3L 12188991..12189625 140..774 400 70.9 Plus
Blast to na_te.dros performed 2015-02-10 22:14:36
Subject Length Description Subject Range Query Range Score Percent Strand
Tc1 1666 Tc1 TC1 1666bp 436..485 766..817 128 76.9 Plus

BO18122.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:18:35 Download gff for BO18122.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17148-PA 1..882 17..898 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:51:26 Download gff for BO18122.5prime
Subject Subject Range Query Range Percent Splice Strand
Est-P-RA 2..887 14..898 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:05 Download gff for BO18122.5prime
Subject Subject Range Query Range Percent Splice Strand
Est-P-RA 2..887 14..898 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:05 Download gff for BO18122.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 12190732..12191619 9..898 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:51:26 Download gff for BO18122.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12183832..12184719 9..898 99   Plus

BO18122.complete Sequence

1666 bp assembled on 2007-03-23

GenBank Submission: FJ634326

> BO18122.complete
GAAGTTATCAGTCGACATGAGTATATTCAAACGGCTGTTGTGCCTGACTT
TGCTGTGGATAGCAGCTTTAGAATCTGAAGCTGATCCCTTGATTGTTGAG
ATAACAAATGGAAAAATCCGTGGCAAAGATAATGGGTTGTACTACAGCTA
CGAATCGATTCCCAATGCCGAGCATCCAACTGGTGCCCTCCGTTTTGAAG
CACCTCAGCCGTATAGTCATCATTGGACTGATGTTTTCAATGCCACGCAG
TCTCCAGTTGAGTGCATGCAGTGGAATCAGTTTATAAACGAAAACAATAA
GCTGATGGGTGATGAGGATTGCTTAACGGTAAGCATCTATAAGCCAAAGA
AACCCAATCGGAGCAGCTTTCCTGTCGTAGTACTCCTGCATGGAGGTGCT
TTCATGTTCGGTAGTGGATCCATATATGGACACGACTCCATTATGCGTGA
GGGAACTTTGCTTGTGGTAAAAATAAGTTTTGGTCTTGGACCATTGGGTT
TTGCAAGTACCGGCGATAGACACTTGCCGGGAAACTATGGTCTAAAGGAT
CAACGTCTGGCCCTACAATGGATCAAGAAGAACATTGCTCACTTTGGTGG
AATGCCAGATAATATTGTGCTCATTGGTCACTCTGCAGGCGGTGCTTCGG
CTCATTTGCAGCTGTTGCACGAGGATTTCAAACATTTGGCCAAAGGAGCG
ATTTCGGTGAGCGGCAATGCATTGGATCCTTGGGTCATACAGCAGGGTGG
ACGACGACGTGCATTTGAACTGGGTCGTATTGTCGGTTGTGGACACACAA
ATGTCTCCGCAGAACTCAAGGACTGCTTGAAGTCTAAGCCGGCTAGCGAT
ATAGTCTCTGCTGTCCGAAGCTTCCTTGTGTTTTCCTATGTACCCTTCAG
TGCTTTTGGACCTGTTGTGGAGCCGTCAGATGCACCAGACGCCTTTCTAA
CCGAGGACCCAAGAGCAGTGATTAAGAGCGGGAAGTTTGCCCAAGTCCCT
TGGGCTGTGACGTACACCACTGAGGACGGGGGATACAACGCTGCTCAGCT
GTTGGAAAGAAACAAATTAACTGGCGAGAGTTGGATTGACCTACTCAATG
ATCGATGGTTTGATTGGGCACCATACTTGCTCTTCTATCGGGACGCCAAG
AAAACCATCAAAGATATGGATGATCTTTCATTTGATCTCAGGCAGCAGTA
TCTAGCAGATCGGCGATTCAGTGTGGAAAGTTATTGGAACGTGCAGCGAA
TGTTTACTGATGTTCTTTTCAAGAATAGCGTGCCAAGTGCAATAGATCTT
CACCGAAAGTATGGCAAAAGTCCGGTTTATTCTTTTGTCTACGATAATCC
TACCGATTCCGGAGTGGGTCAATTGCTTTCCAATCGAACAGATGTACATT
TTGGTACTGTCCACGGAGATGACTTTTTCTTGATTTTCAATACAGCTGCA
TACCGTACCGGCATTCGTCCGGATGAAGAAGTTATTTCAAAAAAGTTTAT
AGGTATGCTGGAGGATTTCGCACTCAACGATAAGGGAACATTAACATTTG
GAGAATGTAATTTCCAAAATAATGTGAACAGCAAGGAATATCAAGTGCTG
CGTATTTCACGAAACGCTTGTAAAAACGAGGAATATGCTCGGTTTCCCGC
AAGCTTTCTAGACCAT

BO18122.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:06:06
Subject Length Description Subject Range Query Range Score Percent Strand
Est-P-RA 1635 CG17148-PA 1..1632 17..1648 8160 100 Plus
Est-6-RB 1635 CG6917-PB 133..1001 140..1008 520 70.7 Plus
Est-6-RA 1635 CG6917-PA 133..1001 140..1008 520 70.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:06:07
Subject Length Description Subject Range Query Range Score Percent Strand
Est-P-RA 1740 CG17148-RA 5..1637 16..1648 8165 100 Plus
thoc6-RC 2869 CG5632-RC 1439..2828 1405..16 6950 100 Minus
thoc6-RC 2869 CG5632-RC 1140..1385 1648..1403 1230 100 Minus
thoc6-RA 1533 CG5632-RA 1140..1385 1648..1403 1230 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:06:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12190737..12192126 16..1405 6950 100 Plus
3L 28110227 3L 12192180..12192425 1403..1648 1230 100 Plus
3L 28110227 3L 12188991..12189859 140..1008 520 70.7 Plus
Blast to na_te.dros performed 2014-11-27 07:06:05
Subject Length Description Subject Range Query Range Score Percent Strand
Tc1 1666 Tc1 TC1 1666bp 436..485 766..817 128 76.9 Plus

BO18122.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:09:27 Download gff for BO18122.complete
Subject Subject Range Query Range Percent Splice Strand
Est-P-RA 1..1635 17..1652 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:26:34 Download gff for BO18122.complete
Subject Subject Range Query Range Percent Splice Strand
Est-P-RA 1..1635 17..1652 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:05:12 Download gff for BO18122.complete
Subject Subject Range Query Range Percent Splice Strand
Est-P-RA 6..1637 17..1650 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:09:27 Download gff for BO18122.complete
Subject Subject Range Query Range Percent Splice Strand
Est-P-RA 1..1635 17..1652 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:02:59 Download gff for BO18122.complete
Subject Subject Range Query Range Percent Splice Strand
Est-P-RA 6..1637 17..1650 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:02:59 Download gff for BO18122.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12190738..12192124 17..1403 100 -> Plus
3L 12192181..12192425 1404..1650 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:05:12 Download gff for BO18122.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12183838..12185224 17..1403 100 -> Plus
arm_3L 12185281..12185525 1404..1650 99   Plus

BO18122.pep Sequence

Translation from 16 to 1666

> BO18122.pep
MSIFKRLLCLTLLWIAALESEADPLIVEITNGKIRGKDNGLYYSYESIPN
AEHPTGALRFEAPQPYSHHWTDVFNATQSPVECMQWNQFINENNKLMGDE
DCLTVSIYKPKKPNRSSFPVVVLLHGGAFMFGSGSIYGHDSIMREGTLLV
VKISFGLGPLGFASTGDRHLPGNYGLKDQRLALQWIKKNIAHFGGMPDNI
VLIGHSAGGASAHLQLLHEDFKHLAKGAISVSGNALDPWVIQQGGRRRAF
ELGRIVGCGHTNVSAELKDCLKSKPASDIVSAVRSFLVFSYVPFSAFGPV
VEPSDAPDAFLTEDPRAVIKSGKFAQVPWAVTYTTEDGGYNAAQLLERNK
LTGESWIDLLNDRWFDWAPYLLFYRDAKKTIKDMDDLSFDLRQQYLADRR
FSVESYWNVQRMFTDVLFKNSVPSAIDLHRKYGKSPVYSFVYDNPTDSGV
GQLLSNRTDVHFGTVHGDDFFLIFNTAAYRTGIRPDEEVISKKFIGMLED
FALNDKGTLTFGECNFQNNVNSKEYQVLRISRNACKNEEYARFPASFLDH

BO18122.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:44:43
Subject Length Description Subject Range Query Range Score Percent Strand
Est-P-PA 544 CG17148-PA 1..544 1..544 2895 100 Plus
Est-6-PB 544 CG6917-PB 9..544 7..544 1838 62.2 Plus
Est-6-PA 544 CG6917-PA 9..544 7..544 1838 62.2 Plus
CG10175-PE 644 CG10175-PE 82..579 15..502 507 29.3 Plus
CG10175-PA 644 CG10175-PA 82..579 15..502 507 29.3 Plus