Clone Sequence Records
BO18122.3prime Sequence
797 bp (721 high quality bases) assembled on 2006-10-13
> BO18122.3prime
ATGGTCTAGAAAGCTTGCGGGAAACCGAGCATATTCCTCGTTTTTACAAG
CGTTTCGTGAAATACGCAGCACTTGATATTCCTTGCTGTTCACATTATTT
TGGAAATTACATTCTCCAAATGTTAATGTTCCCTTATCGTTGAGTGCGAA
ATCCTCCAGCATACCTATAAACTTTTTTGAAATAACTTCTTCATCCGGAC
GAATGCCGGTACGGTATGCAGCTGTATTGAAAATCAAGAAAAAGTCATCT
CCGTGGACAGTACCAAAATGTACATCTGTTCGATTGGAAAGCAATTGACC
CACTCCGGAATCGGTAGGATTATCGTAGACAAAAGAATAAACCGGACTTT
TGCCATACTTTCGGTGAAGATCTATTGCACTTGGCACGCTATTCTTGAAA
AGAACATCAGTAAACATTCGCTGCACGTTCCAATAACTTTCCACACTGAA
TCGCCGATCTGCTAGATACTGCTGCCTGAGATCAAATGAAAGATCATCCA
TATCTTTGATGGTTTTCTTGGCGTCCCGATAGAAGAGCAAGTATGGTGCC
CAATCAAACCATCGATCATTGAGTAGGTCAATCCAACTCTCGCCAGTTAA
TTTGTTTCTTTCCAACAGCTGAGCAGCGTTGTATCCCCCGTCCTCAGTGG
TGTACGTCACAGCCCAAGGGACTTGGGCAAACTTCCCGCTCTTAATCACT
GCTCTTGGGTCCTCGGTTAGAAAGGCGTCTGGGTGCATCTGACGGCTCCA
CAACAGGTCCAAAAGCACTGAAGGGTACATAGGAAAACACAAGGAAG
BO18122.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:58:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17148-PA | 1635 | Est-P-RA | 855..1632 | 797..19 | 3855 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:48:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Est-P-RA | 1740 | CG17148-RA | 860..1637 | 797..19 | 3870 | 99.9 | Minus |
thoc6-RC | 2869 | CG5632-RC | 1439..1973 | 262..797 | 2655 | 99.8 | Plus |
thoc6-RC | 2869 | CG5632-RC | 1140..1385 | 19..264 | 1230 | 100 | Plus |
thoc6-RA | 1533 | CG5632-RA | 1140..1385 | 19..264 | 1230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:48:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12191592..12192126 | 797..262 | 2630 | 99.8 | Minus |
3L | 28110227 | 3L | 12192180..12192425 | 264..19 | 1230 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:48:12 has no hits.
BO18122.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:18:34 Download gff for
BO18122.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17148-PA | 855..1635 | 15..797 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:15:45 Download gff for
BO18122.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Est-P-RA | 860..1641 | 14..797 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:42:39 Download gff for
BO18122.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Est-P-RA | 860..1641 | 14..797 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:42:39 Download gff for
BO18122.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12191592..12192124 | 264..797 | 99 | -> | Minus |
3L | 12192181..12192429 | 14..263 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:15:45 Download gff for
BO18122.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12184692..12185224 | 264..797 | 99 | -> | Minus |
arm_3L | 12185281..12185529 | 14..263 | 99 | | Minus |
BO18122.5prime Sequence
898 bp (794 high quality bases) assembled on 2006-10-13
> BO18122.5prime
GAAGTTATCAGTCGACATGAGTATATTCAAACGGCTGTTGTGCCTGACTT
TGCTGTGGATAGCAGCTTTAGAATCTGAAGCTGATCCCTTGATTGTTGAG
ATAACAAATGGAAAAATCCGTGGCAAAGATAATGGGTTGTACTACAGCTA
CGAATCGATTCCCAATGCCGAGCATCCAACTGGTGCCCTCCGTTTTGAAG
CACCTCAGCCGTATAGTCATCATTGGACTGATGTTTTCAATGCCACGCAG
TCTCCAGTTGAGTGCATGCAGTGGAATCAGTTTATAAACGAAAACAATAA
GCTGATGGGTGATGAGGATTGCTTAACGGTAAGCATCTATAAGCCAAAGA
AACCCAATCGGAGCAGCTTTCCTGTCGTAGTACTCCTGCATGGAGGTGCT
TTCATGTTCGGTAGTGGATCCATATATGGACACGACTCCATTATGCGTGA
GGGAACTTTGCTTGTGGTAAAAATAAGTTTTGGTCTTGGACCATTGGGTT
TTGCAAGTACCGGCGATAGACACTTGCCGGGAAACTATGGTCTAAAGGAT
CAACGTCTGGCCCTACAATGGATCAAGAAGAACATTGCTCACTTTGGTGG
AATGCCAGATAATATTGTGCTCATTGGTCACTCTGCAGGCGGTGCTTCGG
CTCATTTGCAGCTGTTGCACGAGGATTTCAAACATTTGGCCAAAGGAGCG
ATTTCGGTGAGCGGCAATGCATTGGATCCTTGGGTCATACAGCAGGGTGG
ACGACGACGTGCATTTGAACTGGGTCGTATTGTCGGTTGTGGACACACAA
ATGTCTCCGCAGAACTCAAGGACTGCTTGAAGTCTAAGCCGGCTAGCGAT
ATAGTCTCTGCTGTCCGAAGCTTCCTTGTGTTTTCCTATGTTACCTTC
BO18122.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:58:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17148-PA | 1635 | Est-P-RA | 1..875 | 17..891 | 4375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:14:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
thoc6-RC | 2869 | CG5632-RC | 1946..2828 | 898..16 | 4385 | 99.8 | Minus |
Est-P-RA | 1740 | CG17148-RA | 5..887 | 16..898 | 4385 | 99.8 | Plus |
Est-6-RB | 1837 | CG6917-RB | 174..808 | 140..774 | 400 | 71.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:14:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12190737..12191619 | 16..898 | 4385 | 99.8 | Plus |
3L | 28110227 | 3L | 12188991..12189625 | 140..774 | 400 | 70.9 | Plus |
Blast to na_te.dros performed 2015-02-10 22:14:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tc1 | 1666 | Tc1 TC1 1666bp | 436..485 | 766..817 | 128 | 76.9 | Plus |
BO18122.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:18:35 Download gff for
BO18122.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17148-PA | 1..882 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:51:26 Download gff for
BO18122.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Est-P-RA | 2..887 | 14..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:05 Download gff for
BO18122.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Est-P-RA | 2..887 | 14..898 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:05 Download gff for
BO18122.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12190732..12191619 | 9..898 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:51:26 Download gff for
BO18122.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12183832..12184719 | 9..898 | 99 | | Plus |
BO18122.complete Sequence
1666 bp assembled on 2007-03-23
GenBank Submission: FJ634326
> BO18122.complete
GAAGTTATCAGTCGACATGAGTATATTCAAACGGCTGTTGTGCCTGACTT
TGCTGTGGATAGCAGCTTTAGAATCTGAAGCTGATCCCTTGATTGTTGAG
ATAACAAATGGAAAAATCCGTGGCAAAGATAATGGGTTGTACTACAGCTA
CGAATCGATTCCCAATGCCGAGCATCCAACTGGTGCCCTCCGTTTTGAAG
CACCTCAGCCGTATAGTCATCATTGGACTGATGTTTTCAATGCCACGCAG
TCTCCAGTTGAGTGCATGCAGTGGAATCAGTTTATAAACGAAAACAATAA
GCTGATGGGTGATGAGGATTGCTTAACGGTAAGCATCTATAAGCCAAAGA
AACCCAATCGGAGCAGCTTTCCTGTCGTAGTACTCCTGCATGGAGGTGCT
TTCATGTTCGGTAGTGGATCCATATATGGACACGACTCCATTATGCGTGA
GGGAACTTTGCTTGTGGTAAAAATAAGTTTTGGTCTTGGACCATTGGGTT
TTGCAAGTACCGGCGATAGACACTTGCCGGGAAACTATGGTCTAAAGGAT
CAACGTCTGGCCCTACAATGGATCAAGAAGAACATTGCTCACTTTGGTGG
AATGCCAGATAATATTGTGCTCATTGGTCACTCTGCAGGCGGTGCTTCGG
CTCATTTGCAGCTGTTGCACGAGGATTTCAAACATTTGGCCAAAGGAGCG
ATTTCGGTGAGCGGCAATGCATTGGATCCTTGGGTCATACAGCAGGGTGG
ACGACGACGTGCATTTGAACTGGGTCGTATTGTCGGTTGTGGACACACAA
ATGTCTCCGCAGAACTCAAGGACTGCTTGAAGTCTAAGCCGGCTAGCGAT
ATAGTCTCTGCTGTCCGAAGCTTCCTTGTGTTTTCCTATGTACCCTTCAG
TGCTTTTGGACCTGTTGTGGAGCCGTCAGATGCACCAGACGCCTTTCTAA
CCGAGGACCCAAGAGCAGTGATTAAGAGCGGGAAGTTTGCCCAAGTCCCT
TGGGCTGTGACGTACACCACTGAGGACGGGGGATACAACGCTGCTCAGCT
GTTGGAAAGAAACAAATTAACTGGCGAGAGTTGGATTGACCTACTCAATG
ATCGATGGTTTGATTGGGCACCATACTTGCTCTTCTATCGGGACGCCAAG
AAAACCATCAAAGATATGGATGATCTTTCATTTGATCTCAGGCAGCAGTA
TCTAGCAGATCGGCGATTCAGTGTGGAAAGTTATTGGAACGTGCAGCGAA
TGTTTACTGATGTTCTTTTCAAGAATAGCGTGCCAAGTGCAATAGATCTT
CACCGAAAGTATGGCAAAAGTCCGGTTTATTCTTTTGTCTACGATAATCC
TACCGATTCCGGAGTGGGTCAATTGCTTTCCAATCGAACAGATGTACATT
TTGGTACTGTCCACGGAGATGACTTTTTCTTGATTTTCAATACAGCTGCA
TACCGTACCGGCATTCGTCCGGATGAAGAAGTTATTTCAAAAAAGTTTAT
AGGTATGCTGGAGGATTTCGCACTCAACGATAAGGGAACATTAACATTTG
GAGAATGTAATTTCCAAAATAATGTGAACAGCAAGGAATATCAAGTGCTG
CGTATTTCACGAAACGCTTGTAAAAACGAGGAATATGCTCGGTTTCCCGC
AAGCTTTCTAGACCAT
BO18122.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:06:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Est-P-RA | 1635 | CG17148-PA | 1..1632 | 17..1648 | 8160 | 100 | Plus |
Est-6-RB | 1635 | CG6917-PB | 133..1001 | 140..1008 | 520 | 70.7 | Plus |
Est-6-RA | 1635 | CG6917-PA | 133..1001 | 140..1008 | 520 | 70.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:06:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Est-P-RA | 1740 | CG17148-RA | 5..1637 | 16..1648 | 8165 | 100 | Plus |
thoc6-RC | 2869 | CG5632-RC | 1439..2828 | 1405..16 | 6950 | 100 | Minus |
thoc6-RC | 2869 | CG5632-RC | 1140..1385 | 1648..1403 | 1230 | 100 | Minus |
thoc6-RA | 1533 | CG5632-RA | 1140..1385 | 1648..1403 | 1230 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:06:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12190737..12192126 | 16..1405 | 6950 | 100 | Plus |
3L | 28110227 | 3L | 12192180..12192425 | 1403..1648 | 1230 | 100 | Plus |
3L | 28110227 | 3L | 12188991..12189859 | 140..1008 | 520 | 70.7 | Plus |
Blast to na_te.dros performed 2014-11-27 07:06:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tc1 | 1666 | Tc1 TC1 1666bp | 436..485 | 766..817 | 128 | 76.9 | Plus |
BO18122.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:09:27 Download gff for
BO18122.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Est-P-RA | 1..1635 | 17..1652 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:26:34 Download gff for
BO18122.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Est-P-RA | 1..1635 | 17..1652 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:05:12 Download gff for
BO18122.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Est-P-RA | 6..1637 | 17..1650 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:09:27 Download gff for
BO18122.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Est-P-RA | 1..1635 | 17..1652 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:02:59 Download gff for
BO18122.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Est-P-RA | 6..1637 | 17..1650 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:02:59 Download gff for
BO18122.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12190738..12192124 | 17..1403 | 100 | -> | Plus |
3L | 12192181..12192425 | 1404..1650 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:05:12 Download gff for
BO18122.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12183838..12185224 | 17..1403 | 100 | -> | Plus |
arm_3L | 12185281..12185525 | 1404..1650 | 99 | | Plus |
BO18122.pep Sequence
Translation from 16 to 1666
> BO18122.pep
MSIFKRLLCLTLLWIAALESEADPLIVEITNGKIRGKDNGLYYSYESIPN
AEHPTGALRFEAPQPYSHHWTDVFNATQSPVECMQWNQFINENNKLMGDE
DCLTVSIYKPKKPNRSSFPVVVLLHGGAFMFGSGSIYGHDSIMREGTLLV
VKISFGLGPLGFASTGDRHLPGNYGLKDQRLALQWIKKNIAHFGGMPDNI
VLIGHSAGGASAHLQLLHEDFKHLAKGAISVSGNALDPWVIQQGGRRRAF
ELGRIVGCGHTNVSAELKDCLKSKPASDIVSAVRSFLVFSYVPFSAFGPV
VEPSDAPDAFLTEDPRAVIKSGKFAQVPWAVTYTTEDGGYNAAQLLERNK
LTGESWIDLLNDRWFDWAPYLLFYRDAKKTIKDMDDLSFDLRQQYLADRR
FSVESYWNVQRMFTDVLFKNSVPSAIDLHRKYGKSPVYSFVYDNPTDSGV
GQLLSNRTDVHFGTVHGDDFFLIFNTAAYRTGIRPDEEVISKKFIGMLED
FALNDKGTLTFGECNFQNNVNSKEYQVLRISRNACKNEEYARFPASFLDH
BO18122.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:44:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Est-P-PA | 544 | CG17148-PA | 1..544 | 1..544 | 2895 | 100 | Plus |
Est-6-PB | 544 | CG6917-PB | 9..544 | 7..544 | 1838 | 62.2 | Plus |
Est-6-PA | 544 | CG6917-PA | 9..544 | 7..544 | 1838 | 62.2 | Plus |
CG10175-PE | 644 | CG10175-PE | 82..579 | 15..502 | 507 | 29.3 | Plus |
CG10175-PA | 644 | CG10175-PA | 82..579 | 15..502 | 507 | 29.3 | Plus |