Clone Sequence Records
BO18125.3prime Sequence
831 bp (713 high quality bases) assembled on 2006-10-13
> BO18125.3prime
ATGGTCTAGAAAGCTTGCCTCGGTTCGCGGCCGAAGGGCTAAACGCAAAG
TCCGATCGGGCACGGTGACCATGCGGAGTACGCTGTCAACGGGCATCTCG
TTAAGGCAGCTCATCTCAAACTGAGCAGCACATCGGCCCAGCAGGGAGTG
GAGCTGCTTGAGTGCCACACGGCGACCAATGCAAGACCGCTGGCCGATGG
CAAAAGGCAGACTGCCGTGTGACTTATGCACCTGCTCCGTCTCTCCAATG
CACCAGCGCTCCGGGAGCACACGTTCCGGCTGCTCAAAGTGTGATGGATC
GCGACCTGCCGTGTACAAGGAGAGCAGCACCATGGTATCCTTTTCGATAA
AGTGACCGCCAAGTTGCGCGTCCTGCGGCAGATATCGGCCAATGAAGGGA
GCTACGGGGTACAGACGCAGGGACTCCTTGATCAGGCCGTGCATCAGGCG
AGAATCATTGGTAGCTCGCTCCTTGGCCAGTCGTTGCTGGAGCCTCGGCT
CCTTTGAAAGGGCAAACAAAGCCCACTGACTGCTGAATGCGGTCGTGTCA
CCTGCTGCAATGACCAAGTCTACAAATATCCGCTTGATCATATCGCCTGG
CACATCCGCCGCCTGGAGGCGATGGTAAAGCGCCTCATCGTGCGGTCTCC
TTTGGTCCTCCTGCACTCTGATGCAGTGATCGATTATGGCAGCTCCCTCA
CGCAGCACCTCATCCACATTGGCCTCGAAATCCCGCCAGATGGGCAGGCG
CAAAATCTGGGCCAAGCGAGGCGGGAATGTCATCAGTCGCGAGCTATGCT
CAAACACCTTGTGCACAATCTGCGTGAAATA
BO18125.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14728-PA | 1563 | sad-RA | 751..1560 | 828..19 | 4050 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:05:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sad-RA | 1773 | CG14728-RA | 857..1666 | 828..19 | 4050 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:04:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11879330..11879647 | 336..19 | 1590 | 100 | Minus |
3R | 32079331 | 3R | 11878725..11879009 | 828..544 | 1425 | 100 | Minus |
3R | 32079331 | 3R | 11879067..11879274 | 544..337 | 1040 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:04:59 has no hits.
BO18125.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:18:39 Download gff for
BO18125.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14728-PA | 749..1563 | 16..830 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:43:53 Download gff for
BO18125.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sad-RA | 855..1666 | 19..830 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:19:20 Download gff for
BO18125.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sad-RA | 855..1666 | 19..830 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:19:20 Download gff for
BO18125.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11878723..11879009 | 544..830 | 99 | -> | Minus |
3R | 11879068..11879274 | 337..543 | 100 | -> | Minus |
3R | 11879330..11879647 | 19..336 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:43:53 Download gff for
BO18125.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7704445..7704731 | 544..830 | 99 | -> | Minus |
arm_3R | 7704790..7704996 | 337..543 | 100 | -> | Minus |
arm_3R | 7705052..7705369 | 19..336 | 100 | | Minus |
BO18125.5prime Sequence
871 bp (738 high quality bases) assembled on 2006-10-13
> BO18125.5prime
GAAGTTATCAGTCGACATGACCGAGAAGAGGGAGCGGCCGGGCCCGCTGC
GCTGGCTGAGACACCTGCTCGACCAGCTCCTGGTGCGAATCCTTAGCCTG
AGCCTCTTCCGTTCGCGCTGCGATCCGCCGCCTTTGCAGCGTTTTCCCGC
AACGGAACTACCGCCTGCCGTCGCCGCCAAATACGTGCCCATTCCAAGGG
TGAAGGGACTTCCGGTAGTTGGGACACTTGTGGATCTTATAGCCGCCGGC
GGAGCCACGCACCTTCATAAGTACATCGATGCGAGGCACAAGCAGTATGG
TCCCATTTTCCGGGAGCGATTGGGCGGTACCCAGGATGCAGTGTTCGTAT
CGTCCGCAAATCTCATGCGCGGAGTCTTCCAGCACGAGGGTCAGTATCCG
CAGCATCCGCTGCCGGATGCCTGGACGCTGTATAACCAGCAACATGCCTG
CCAACGGGGACTGTTCTTCATGGAGGGCGCCGAGTGGCTGCACAACCGAC
GCATACTTAATCGACTGCTGCTCAACGGAAATTTGAATTGGATGGACGTG
CATATTGAGAGCTGTACCAGACGAATGGTGGATCAGTGGAAAAGACGCAC
TGCGGAGGCGGCGGCGATTCCGCTAGCGGAGAGTGGTGAAATACGAAGCT
ACGAACTGCCCCTGTTGGAACAACAGCTCTACCGTTGGTCCATAGAAGTT
CTGTGCTGCATCATGTTTGGCACCAGCGTGCTCACCTGCCCCAAGATCCA
GTCCTCGCTAGACTACTTCACGCAGATTGTGCACAAGGTGTTTGAGCATA
GCTCGCGACTGATGACTTTCCCGCCTCGCTTGGCCCAGATTTTGCGCCTG
CCCATCTGGCGGGATTTCGAG
BO18125.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14728-PA | 1563 | sad-RA | 1..855 | 17..871 | 4225 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:45:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sad-RA | 1773 | CG14728-RA | 107..961 | 17..871 | 4245 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:45:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11877341..11877585 | 17..261 | 1225 | 100 | Plus |
3R | 32079331 | 3R | 11878359..11878585 | 472..698 | 1135 | 100 | Plus |
3R | 32079331 | 3R | 11878062..11878272 | 262..472 | 1055 | 100 | Plus |
3R | 32079331 | 3R | 11878655..11878829 | 697..871 | 845 | 98.9 | Plus |
Blast to na_te.dros performed on 2015-01-30 17:45:27 has no hits.
BO18125.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:18:40 Download gff for
BO18125.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14728-PA | 1..855 | 17..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:49:53 Download gff for
BO18125.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sad-RA | 102..961 | 9..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:04:48 Download gff for
BO18125.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sad-RA | 102..961 | 9..871 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:04:48 Download gff for
BO18125.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11877336..11877585 | 9..261 | 98 | -> | Plus |
3R | 11878062..11878271 | 262..471 | 100 | -> | Plus |
3R | 11878359..11878585 | 472..698 | 100 | -> | Plus |
3R | 11878657..11878829 | 699..871 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:49:53 Download gff for
BO18125.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7703058..7703307 | 9..261 | 98 | -> | Plus |
arm_3R | 7703784..7703993 | 262..471 | 100 | -> | Plus |
arm_3R | 7704081..7704307 | 472..698 | 100 | -> | Plus |
arm_3R | 7704379..7704551 | 699..871 | 98 | | Plus |
BO18125.complete Sequence
1594 bp assembled on 2006-10-11
GenBank Submission: FJ634327
> BO18125.complete
GAAGTTATCAGTCGACATGACCGAGAAGAGGGAGCGGCCGGGCCCGCTGC
GCTGGCTGAGACACCTGCTCGACCAGCTCCTGGTGCGAATCCTTAGCCTG
AGCCTCTTCCGTTCGCGCTGCGATCCGCCGCCTTTGCAGCGTTTTCCCGC
AACGGAACTACCGCCTGCCGTCGCCGCCAAATACGTGCCCATTCCAAGGG
TGAAGGGACTTCCGGTAGTTGGGACACTTGTGGATCTTATAGCCGCCGGC
GGAGCCACGCACCTTCATAAGTACATCGATGCGAGGCACAAGCAGTATGG
TCCCATTTTCCGGGAGCGATTGGGCGGTACCCAGGATGCAGTGTTCGTAT
CGTCCGCAAATCTCATGCGCGGAGTCTTCCAGCACGAGGGTCAGTATCCG
CAGCATCCGCTGCCGGATGCCTGGACGCTGTATAACCAGCAACATGCCTG
CCAACGGGGACTGTTCTTCATGGAGGGCGCCGAGTGGCTGCACAACCGAC
GCATACTTAATCGACTGCTGCTCAACGGAAATTTGAATTGGATGGACGTG
CATATTGAGAGCTGTACCAGACGAATGGTGGATCAGTGGAAAAGACGCAC
TGCGGAGGCGGCGGCGATTCCGCTAGCGGAGAGTGGTGAAATACGAAGCT
ACGAACTGCCCCTGTTGGAACAACAGCTCTACCGTTGGTCCATAGAAGTT
CTGTGCTGCATCATGTTTGGCACCAGCGTGCTCACCTGCCCCAAGATCCA
GTCCTCGCTAGACTACTTCACGCAGATTGTGCACAAGGTGTTTGAGCATA
GCTCGCGACTGATGACTTTCCCGCCTCGCTTGGCCCAGATTTTGCGCCTG
CCCATCTGGCGGGATTTCGAGGCCAATGTGGATGAGGTGCTGCGTGAGGG
AGCTGCCATAATCGATCACTGCATCAGAGTGCAGGAGGACCAAAGGAGAC
CGCACGATGAGGCGCTTTACCATCGCCTCCAGGCGGCGGATGTGCCAGGC
GATATGATCAAGCGGATATTTGTAGACTTGGTCATTGCAGCAGGTGACAC
GACCGCATTCAGCAGTCAGTGGGCTTTGTTTGCCCTTTCAAAGGAGCCGA
GGCTCCAGCAACGACTGGCCAAGGAGCGAGCTACCAATGATTCTCGCCTG
ATGCACGGCCTGATCAAGGAGTCCCTGCGTCTGTACCCCGTAGCTCCCTT
CATTGGCCGATATCTGCCGCAGGACGCGCAACTTGGCGGTCACTTTATCG
AAAAGGATACCATGGTGCTGCTCTCCTTGTACACGGCAGGTCGCGATCCA
TCACACTTTGAGCAGCCGGAACGTGTGCTCCCGGAGCGCTGGTGCATTGG
AGAGACGGAGCAGGTGCATAAGTCACACGGCAGTCTGCCTTTTGCCATCG
GCCAGCGGTCTTGCATTGGTCGCCGTGTGGCACTCAAGCAGCTCCACTCC
CTGCTGGGCCGATGTGCTGCTCAGTTTGAGATGAGCTGCCTTAACGAGAT
GCCCGTTGACAGCGTACTCCGCATGGTCACCGTGCCCGATCGGACTTTGC
GTTTAGCCCTTCGGCCGCGAACCGAGGCAAGCTTTCTAGACCAT
BO18125.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:20:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sad-RA | 1563 | CG14728-PA | 1..1560 | 17..1576 | 7770 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:20:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sad-RA | 1773 | CG14728-RA | 107..1666 | 17..1576 | 7770 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:20:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11878655..11879009 | 697..1051 | 1745 | 99.4 | Plus |
3R | 32079331 | 3R | 11879330..11879647 | 1259..1576 | 1590 | 100 | Plus |
3R | 32079331 | 3R | 11877341..11877585 | 17..261 | 1225 | 100 | Plus |
3R | 32079331 | 3R | 11878359..11878585 | 472..698 | 1135 | 100 | Plus |
3R | 32079331 | 3R | 11878062..11878272 | 262..472 | 1055 | 100 | Plus |
3R | 32079331 | 3R | 11879067..11879274 | 1051..1258 | 1040 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:20:02 has no hits.
BO18125.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:33 Download gff for
BO18125.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sad-RA | 1..1563 | 17..1579 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:40:49 Download gff for
BO18125.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sad-RA | 102..1666 | 9..1576 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:33 Download gff for
BO18125.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sad-RA | 107..1666 | 17..1578 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:33 Download gff for
BO18125.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sad-RA | 102..1666 | 9..1576 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:30 Download gff for
BO18125.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sad-RA | 107..1666 | 17..1578 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:30 Download gff for
BO18125.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11877341..11877585 | 17..261 | 100 | -> | Plus |
3R | 11878062..11878271 | 262..471 | 100 | -> | Plus |
3R | 11878359..11878585 | 472..698 | 100 | -> | Plus |
3R | 11879330..11879647 | 1259..1578 | 99 | | Plus |
3R | 11878657..11879009 | 699..1051 | 99 | -> | Plus |
3R | 11879068..11879274 | 1052..1258 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:33 Download gff for
BO18125.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7703063..7703307 | 17..261 | 100 | -> | Plus |
arm_3R | 7703784..7703993 | 262..471 | 100 | -> | Plus |
arm_3R | 7704081..7704307 | 472..698 | 100 | -> | Plus |
arm_3R | 7704379..7704731 | 699..1051 | 99 | -> | Plus |
arm_3R | 7704790..7704996 | 1052..1258 | 100 | -> | Plus |
arm_3R | 7705052..7705369 | 1259..1578 | 99 | | Plus |
BO18125.pep Sequence
Translation from 16 to 1594
> BO18125.pep
MTEKRERPGPLRWLRHLLDQLLVRILSLSLFRSRCDPPPLQRFPATELPP
AVAAKYVPIPRVKGLPVVGTLVDLIAAGGATHLHKYIDARHKQYGPIFRE
RLGGTQDAVFVSSANLMRGVFQHEGQYPQHPLPDAWTLYNQQHACQRGLF
FMEGAEWLHNRRILNRLLLNGNLNWMDVHIESCTRRMVDQWKRRTAEAAA
IPLAESGEIRSYELPLLEQQLYRWSIEVLCCIMFGTSVLTCPKIQSSLDY
FTQIVHKVFEHSSRLMTFPPRLAQILRLPIWRDFEANVDEVLREGAAIID
HCIRVQEDQRRPHDEALYHRLQAADVPGDMIKRIFVDLVIAAGDTTAFSS
QWALFALSKEPRLQQRLAKERATNDSRLMHGLIKESLRLYPVAPFIGRYL
PQDAQLGGHFIEKDTMVLLSLYTAGRDPSHFEQPERVLPERWCIGETEQV
HKSHGSLPFAIGQRSCIGRRVALKQLHSLLGRCAAQFEMSCLNEMPVDSV
LRMVTVPDRTLRLALRPRTEASFLDH
BO18125.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:07:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sad-PA | 520 | CG14728-PA | 1..520 | 1..520 | 2741 | 100 | Plus |
Cyp49a1-PE | 589 | CG18377-PE | 90..560 | 46..490 | 277 | 24.7 | Plus |
Cyp49a1-PD | 589 | CG18377-PD | 90..560 | 46..490 | 277 | 24.7 | Plus |
Cyp49a1-PA | 589 | CG18377-PA | 90..560 | 46..490 | 277 | 24.7 | Plus |
dib-PA | 489 | CG12028-PA | 5..489 | 40..520 | 276 | 24.8 | Plus |