Clone BO18125 Report

Search the DGRC for BO18125

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:181
Well:25
Vector:pDNR-Dual
Associated Gene/Transcriptsad-RA
Protein status:BO18125.pep: validated full length
Sequenced Size:1594

Clone Sequence Records

BO18125.3prime Sequence

831 bp (713 high quality bases) assembled on 2006-10-13

> BO18125.3prime
ATGGTCTAGAAAGCTTGCCTCGGTTCGCGGCCGAAGGGCTAAACGCAAAG
TCCGATCGGGCACGGTGACCATGCGGAGTACGCTGTCAACGGGCATCTCG
TTAAGGCAGCTCATCTCAAACTGAGCAGCACATCGGCCCAGCAGGGAGTG
GAGCTGCTTGAGTGCCACACGGCGACCAATGCAAGACCGCTGGCCGATGG
CAAAAGGCAGACTGCCGTGTGACTTATGCACCTGCTCCGTCTCTCCAATG
CACCAGCGCTCCGGGAGCACACGTTCCGGCTGCTCAAAGTGTGATGGATC
GCGACCTGCCGTGTACAAGGAGAGCAGCACCATGGTATCCTTTTCGATAA
AGTGACCGCCAAGTTGCGCGTCCTGCGGCAGATATCGGCCAATGAAGGGA
GCTACGGGGTACAGACGCAGGGACTCCTTGATCAGGCCGTGCATCAGGCG
AGAATCATTGGTAGCTCGCTCCTTGGCCAGTCGTTGCTGGAGCCTCGGCT
CCTTTGAAAGGGCAAACAAAGCCCACTGACTGCTGAATGCGGTCGTGTCA
CCTGCTGCAATGACCAAGTCTACAAATATCCGCTTGATCATATCGCCTGG
CACATCCGCCGCCTGGAGGCGATGGTAAAGCGCCTCATCGTGCGGTCTCC
TTTGGTCCTCCTGCACTCTGATGCAGTGATCGATTATGGCAGCTCCCTCA
CGCAGCACCTCATCCACATTGGCCTCGAAATCCCGCCAGATGGGCAGGCG
CAAAATCTGGGCCAAGCGAGGCGGGAATGTCATCAGTCGCGAGCTATGCT
CAAACACCTTGTGCACAATCTGCGTGAAATA

BO18125.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG14728-PA 1563 sad-RA 751..1560 828..19 4050 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:05:00
Subject Length Description Subject Range Query Range Score Percent Strand
sad-RA 1773 CG14728-RA 857..1666 828..19 4050 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:04:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11879330..11879647 336..19 1590 100 Minus
3R 32079331 3R 11878725..11879009 828..544 1425 100 Minus
3R 32079331 3R 11879067..11879274 544..337 1040 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:04:59 has no hits.

BO18125.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:18:39 Download gff for BO18125.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14728-PA 749..1563 16..830 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:43:53 Download gff for BO18125.3prime
Subject Subject Range Query Range Percent Splice Strand
sad-RA 855..1666 19..830 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:19:20 Download gff for BO18125.3prime
Subject Subject Range Query Range Percent Splice Strand
sad-RA 855..1666 19..830 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:19:20 Download gff for BO18125.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11878723..11879009 544..830 99 -> Minus
3R 11879068..11879274 337..543 100 -> Minus
3R 11879330..11879647 19..336 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:43:53 Download gff for BO18125.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7704445..7704731 544..830 99 -> Minus
arm_3R 7704790..7704996 337..543 100 -> Minus
arm_3R 7705052..7705369 19..336 100   Minus

BO18125.5prime Sequence

871 bp (738 high quality bases) assembled on 2006-10-13

> BO18125.5prime
GAAGTTATCAGTCGACATGACCGAGAAGAGGGAGCGGCCGGGCCCGCTGC
GCTGGCTGAGACACCTGCTCGACCAGCTCCTGGTGCGAATCCTTAGCCTG
AGCCTCTTCCGTTCGCGCTGCGATCCGCCGCCTTTGCAGCGTTTTCCCGC
AACGGAACTACCGCCTGCCGTCGCCGCCAAATACGTGCCCATTCCAAGGG
TGAAGGGACTTCCGGTAGTTGGGACACTTGTGGATCTTATAGCCGCCGGC
GGAGCCACGCACCTTCATAAGTACATCGATGCGAGGCACAAGCAGTATGG
TCCCATTTTCCGGGAGCGATTGGGCGGTACCCAGGATGCAGTGTTCGTAT
CGTCCGCAAATCTCATGCGCGGAGTCTTCCAGCACGAGGGTCAGTATCCG
CAGCATCCGCTGCCGGATGCCTGGACGCTGTATAACCAGCAACATGCCTG
CCAACGGGGACTGTTCTTCATGGAGGGCGCCGAGTGGCTGCACAACCGAC
GCATACTTAATCGACTGCTGCTCAACGGAAATTTGAATTGGATGGACGTG
CATATTGAGAGCTGTACCAGACGAATGGTGGATCAGTGGAAAAGACGCAC
TGCGGAGGCGGCGGCGATTCCGCTAGCGGAGAGTGGTGAAATACGAAGCT
ACGAACTGCCCCTGTTGGAACAACAGCTCTACCGTTGGTCCATAGAAGTT
CTGTGCTGCATCATGTTTGGCACCAGCGTGCTCACCTGCCCCAAGATCCA
GTCCTCGCTAGACTACTTCACGCAGATTGTGCACAAGGTGTTTGAGCATA
GCTCGCGACTGATGACTTTCCCGCCTCGCTTGGCCCAGATTTTGCGCCTG
CCCATCTGGCGGGATTTCGAG

BO18125.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG14728-PA 1563 sad-RA 1..855 17..871 4225 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:45:31
Subject Length Description Subject Range Query Range Score Percent Strand
sad-RA 1773 CG14728-RA 107..961 17..871 4245 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 17:45:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11877341..11877585 17..261 1225 100 Plus
3R 32079331 3R 11878359..11878585 472..698 1135 100 Plus
3R 32079331 3R 11878062..11878272 262..472 1055 100 Plus
3R 32079331 3R 11878655..11878829 697..871 845 98.9 Plus
Blast to na_te.dros performed on 2015-01-30 17:45:27 has no hits.

BO18125.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:18:40 Download gff for BO18125.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14728-PA 1..855 17..871 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:49:53 Download gff for BO18125.5prime
Subject Subject Range Query Range Percent Splice Strand
sad-RA 102..961 9..871 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:04:48 Download gff for BO18125.5prime
Subject Subject Range Query Range Percent Splice Strand
sad-RA 102..961 9..871 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:04:48 Download gff for BO18125.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11877336..11877585 9..261 98 -> Plus
3R 11878062..11878271 262..471 100 -> Plus
3R 11878359..11878585 472..698 100 -> Plus
3R 11878657..11878829 699..871 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:49:53 Download gff for BO18125.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7703058..7703307 9..261 98 -> Plus
arm_3R 7703784..7703993 262..471 100 -> Plus
arm_3R 7704081..7704307 472..698 100 -> Plus
arm_3R 7704379..7704551 699..871 98   Plus

BO18125.complete Sequence

1594 bp assembled on 2006-10-11

GenBank Submission: FJ634327

> BO18125.complete
GAAGTTATCAGTCGACATGACCGAGAAGAGGGAGCGGCCGGGCCCGCTGC
GCTGGCTGAGACACCTGCTCGACCAGCTCCTGGTGCGAATCCTTAGCCTG
AGCCTCTTCCGTTCGCGCTGCGATCCGCCGCCTTTGCAGCGTTTTCCCGC
AACGGAACTACCGCCTGCCGTCGCCGCCAAATACGTGCCCATTCCAAGGG
TGAAGGGACTTCCGGTAGTTGGGACACTTGTGGATCTTATAGCCGCCGGC
GGAGCCACGCACCTTCATAAGTACATCGATGCGAGGCACAAGCAGTATGG
TCCCATTTTCCGGGAGCGATTGGGCGGTACCCAGGATGCAGTGTTCGTAT
CGTCCGCAAATCTCATGCGCGGAGTCTTCCAGCACGAGGGTCAGTATCCG
CAGCATCCGCTGCCGGATGCCTGGACGCTGTATAACCAGCAACATGCCTG
CCAACGGGGACTGTTCTTCATGGAGGGCGCCGAGTGGCTGCACAACCGAC
GCATACTTAATCGACTGCTGCTCAACGGAAATTTGAATTGGATGGACGTG
CATATTGAGAGCTGTACCAGACGAATGGTGGATCAGTGGAAAAGACGCAC
TGCGGAGGCGGCGGCGATTCCGCTAGCGGAGAGTGGTGAAATACGAAGCT
ACGAACTGCCCCTGTTGGAACAACAGCTCTACCGTTGGTCCATAGAAGTT
CTGTGCTGCATCATGTTTGGCACCAGCGTGCTCACCTGCCCCAAGATCCA
GTCCTCGCTAGACTACTTCACGCAGATTGTGCACAAGGTGTTTGAGCATA
GCTCGCGACTGATGACTTTCCCGCCTCGCTTGGCCCAGATTTTGCGCCTG
CCCATCTGGCGGGATTTCGAGGCCAATGTGGATGAGGTGCTGCGTGAGGG
AGCTGCCATAATCGATCACTGCATCAGAGTGCAGGAGGACCAAAGGAGAC
CGCACGATGAGGCGCTTTACCATCGCCTCCAGGCGGCGGATGTGCCAGGC
GATATGATCAAGCGGATATTTGTAGACTTGGTCATTGCAGCAGGTGACAC
GACCGCATTCAGCAGTCAGTGGGCTTTGTTTGCCCTTTCAAAGGAGCCGA
GGCTCCAGCAACGACTGGCCAAGGAGCGAGCTACCAATGATTCTCGCCTG
ATGCACGGCCTGATCAAGGAGTCCCTGCGTCTGTACCCCGTAGCTCCCTT
CATTGGCCGATATCTGCCGCAGGACGCGCAACTTGGCGGTCACTTTATCG
AAAAGGATACCATGGTGCTGCTCTCCTTGTACACGGCAGGTCGCGATCCA
TCACACTTTGAGCAGCCGGAACGTGTGCTCCCGGAGCGCTGGTGCATTGG
AGAGACGGAGCAGGTGCATAAGTCACACGGCAGTCTGCCTTTTGCCATCG
GCCAGCGGTCTTGCATTGGTCGCCGTGTGGCACTCAAGCAGCTCCACTCC
CTGCTGGGCCGATGTGCTGCTCAGTTTGAGATGAGCTGCCTTAACGAGAT
GCCCGTTGACAGCGTACTCCGCATGGTCACCGTGCCCGATCGGACTTTGC
GTTTAGCCCTTCGGCCGCGAACCGAGGCAAGCTTTCTAGACCAT

BO18125.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:20:03
Subject Length Description Subject Range Query Range Score Percent Strand
sad-RA 1563 CG14728-PA 1..1560 17..1576 7770 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:20:05
Subject Length Description Subject Range Query Range Score Percent Strand
sad-RA 1773 CG14728-RA 107..1666 17..1576 7770 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:20:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11878655..11879009 697..1051 1745 99.4 Plus
3R 32079331 3R 11879330..11879647 1259..1576 1590 100 Plus
3R 32079331 3R 11877341..11877585 17..261 1225 100 Plus
3R 32079331 3R 11878359..11878585 472..698 1135 100 Plus
3R 32079331 3R 11878062..11878272 262..472 1055 100 Plus
3R 32079331 3R 11879067..11879274 1051..1258 1040 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:20:02 has no hits.

BO18125.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:33 Download gff for BO18125.complete
Subject Subject Range Query Range Percent Splice Strand
sad-RA 1..1563 17..1579 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:40:49 Download gff for BO18125.complete
Subject Subject Range Query Range Percent Splice Strand
sad-RA 102..1666 9..1576 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:33 Download gff for BO18125.complete
Subject Subject Range Query Range Percent Splice Strand
sad-RA 107..1666 17..1578 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:33 Download gff for BO18125.complete
Subject Subject Range Query Range Percent Splice Strand
sad-RA 102..1666 9..1576 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:30 Download gff for BO18125.complete
Subject Subject Range Query Range Percent Splice Strand
sad-RA 107..1666 17..1578 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:30 Download gff for BO18125.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11877341..11877585 17..261 100 -> Plus
3R 11878062..11878271 262..471 100 -> Plus
3R 11878359..11878585 472..698 100 -> Plus
3R 11879330..11879647 1259..1578 99   Plus
3R 11878657..11879009 699..1051 99 -> Plus
3R 11879068..11879274 1052..1258 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:33 Download gff for BO18125.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7703063..7703307 17..261 100 -> Plus
arm_3R 7703784..7703993 262..471 100 -> Plus
arm_3R 7704081..7704307 472..698 100 -> Plus
arm_3R 7704379..7704731 699..1051 99 -> Plus
arm_3R 7704790..7704996 1052..1258 100 -> Plus
arm_3R 7705052..7705369 1259..1578 99   Plus

BO18125.pep Sequence

Translation from 16 to 1594

> BO18125.pep
MTEKRERPGPLRWLRHLLDQLLVRILSLSLFRSRCDPPPLQRFPATELPP
AVAAKYVPIPRVKGLPVVGTLVDLIAAGGATHLHKYIDARHKQYGPIFRE
RLGGTQDAVFVSSANLMRGVFQHEGQYPQHPLPDAWTLYNQQHACQRGLF
FMEGAEWLHNRRILNRLLLNGNLNWMDVHIESCTRRMVDQWKRRTAEAAA
IPLAESGEIRSYELPLLEQQLYRWSIEVLCCIMFGTSVLTCPKIQSSLDY
FTQIVHKVFEHSSRLMTFPPRLAQILRLPIWRDFEANVDEVLREGAAIID
HCIRVQEDQRRPHDEALYHRLQAADVPGDMIKRIFVDLVIAAGDTTAFSS
QWALFALSKEPRLQQRLAKERATNDSRLMHGLIKESLRLYPVAPFIGRYL
PQDAQLGGHFIEKDTMVLLSLYTAGRDPSHFEQPERVLPERWCIGETEQV
HKSHGSLPFAIGQRSCIGRRVALKQLHSLLGRCAAQFEMSCLNEMPVDSV
LRMVTVPDRTLRLALRPRTEASFLDH

BO18125.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:07:40
Subject Length Description Subject Range Query Range Score Percent Strand
sad-PA 520 CG14728-PA 1..520 1..520 2741 100 Plus
Cyp49a1-PE 589 CG18377-PE 90..560 46..490 277 24.7 Plus
Cyp49a1-PD 589 CG18377-PD 90..560 46..490 277 24.7 Plus
Cyp49a1-PA 589 CG18377-PA 90..560 46..490 277 24.7 Plus
dib-PA 489 CG12028-PA 5..489 40..520 276 24.8 Plus