Clone Sequence Records
BO18126.3prime Sequence
702 bp (605 high quality bases) assembled on 2006-10-13
> BO18126.3prime
ATGGTCTAGAAAGCTTGCCTTGGCCAGTTCCTCGGTTTTGGCTGCAGTGG
CTCCATTTTCGCCTTGGTTTTTGGCCAGTAAAATGGCCGCATCTACGGCT
GCCAGTTCCTCGCCGCCCTTCTCCTCCACTTTCTCTACTTTATCAACCTT
CTCCGCCTGCTCCTCTTTGCTGTCTTCCGTGGAGATTTCCGGTTTCTTGG
CCAGCGGCATTTCCACATCCTCGGCTGCTGCGACTGCTCCATTGCCGTTA
TTCGAGGCAACGGGCACTTCGTTGGCATTTGCATCCTCTGCCTTTTGCTC
CTCTTCGATGCTTATAACGGGATTGGGTGTGGGTTCATCCACATTGGCAG
TCTCTTCGTTTTTGGCCAACGCCACTTCCATGGACTCTGATTCTGGTTCT
GCAACGCCATTGTTGGCACTGGAAGTGGTTCCTGCGGTGGAAGGGGCTTC
CACTGCAACAGCAGCGGCAGCAGCAGCCTCATTGGAAATGGGGGGCGAAA
CAGCCGGCATTTCCATCTCTGTCTCTTCCTGACCGTTGCCGTTGCTCTCG
GCGAGAGTGAGCGAGAGCGAAGGAGTGGGTGTGGGTGCAGTCGGATTTAA
AGTGGAAGTGGTGGCACTAGCTGCCGCCTGCTGCTCTACCTCTGAACGGC
TTTGGCGGCTGCGCATCCTTATCCTTCTGCTGCTGCGATATCTGCTGGAA
TG
BO18126.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:58:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4167-PA | 1338 | Hsp67Ba-RA | 656..1335 | 699..19 | 3340 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:38:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hsp67Ba-RA | 1733 | CG4167-RA | 751..1430 | 699..19 | 3365 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:38:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9378105..9378784 | 19..699 | 3340 | 99.7 | Plus |
Blast to na_te.dros performed 2015-02-13 13:38:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3282..3310 | 447..475 | 109 | 86.2 | Plus |
BO18126.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:18:41 Download gff for
BO18126.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4167-PA | 654..1338 | 16..702 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:46:29 Download gff for
BO18126.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hsp67Ba-RA | 749..1435 | 14..702 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:04:58 Download gff for
BO18126.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hsp67Ba-RA | 749..1435 | 14..702 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:04:58 Download gff for
BO18126.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9378100..9378786 | 14..702 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:46:29 Download gff for
BO18126.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9371200..9371886 | 14..702 | 99 | | Plus |
BO18126.5prime Sequence
781 bp (698 high quality bases) assembled on 2006-10-13
> BO18126.5prime
GAAGTTATCAGTCGACATGTCGCTGATACCGTTCATACTAGATTTGGCCG
AGGAGCTGCACGATTTCAATCGCAGCCTGGCAATGGATATAGATGATTCG
GCCGGATTCGGGTTGTATCCACTGGAGGCCACCTCACAGTTGCCACAGCT
GAGTCGTGGGTTGGGGCGTGGGAATGCAATGATGTGGGTGCCCATCAAGG
GTCAGTCGGCGGCATCGCAGCATCGCCATCATCCGTACAATCGTGTGGCC
GGAGCCAAGACTGCTTGCTGCAATAAGTCGCTGGTGGAGCTGGAAAAGGA
ATTGGGCGATAAGGGCACGTCCGGGGCAAGCGGCAGCACCAGTGGCCAAC
CGGCGGCCAGCAAATCCGCCTACTCCGTGGTGAATAGGAACGGCTTCCAG
GTGAGCATGAATGTGAAGCAGTTCGCCGCCAACGAACTGACCGTCAAGAC
CATCGATAACTGCATCGTGGTCGAGGGTCAGCACGACGAGAAGGAGGATG
GCCACGGGGTGATCTCGCGCCACTTCATCCGCAAGTACATCCTGCCCAAG
GGCTATGATCCCAACGAGGTGCACTCGACCCTCTCCTCGGACGGCATTCT
GACGGTGAAGGCGCCGCCACCACTTCCAGTCGTCAAAGGCAGCCTGGAAC
GACAGGAGCGCATCGTAGACATCCAGCAGATATCGCAGCAGCAGAAGGAT
AAGGATGCGCAGCCGCCAAAGCCGTCAGAGGTAGAGCAGCAGGCGGCAGC
TAGTGCCCCCACTTCCACTTTAAATCCGACT
BO18126.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:59:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4167-PA | 1338 | Hsp67Ba-RA | 1..765 | 17..781 | 3800 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:13:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hsp67Ba-RA | 1733 | CG4167-RA | 96..860 | 17..781 | 3810 | 99.9 | Plus |
Hsp27-RB | 1632 | CG4466-RB | 388..566 | 392..570 | 295 | 77.7 | Plus |
Hsp27-RA | 1220 | CG4466-RA | 388..566 | 392..570 | 295 | 77.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:13:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9378675..9379439 | 781..17 | 3810 | 99.9 | Minus |
3L | 28110227 | 3L | 9384450..9384628 | 392..570 | 295 | 77.7 | Plus |
Blast to na_te.dros performed 2015-02-12 11:13:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 1061..1136 | 686..762 | 112 | 62.3 | Plus |
BO18126.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:18:41 Download gff for
BO18126.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4167-PA | 1..765 | 17..781 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:35:42 Download gff for
BO18126.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hsp67Ba-RA | 89..860 | 10..781 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:22:37 Download gff for
BO18126.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hsp67Ba-RA | 89..860 | 10..781 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:22:37 Download gff for
BO18126.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9378675..9379446 | 10..781 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:35:42 Download gff for
BO18126.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9371775..9372546 | 10..781 | 99 | | Minus |
BO18126.complete Sequence
1369 bp assembled on 2007-03-23
GenBank Submission: FJ634328
> BO18126.complete
GAAGTTATCAGTCGACATGTCGCTGATACCGTTCATACTAGATTTGGCCG
AGGAGCTGCACGATTTCAATCGCAGCCTGGCAATGGATATAGATGATTCG
GCCGGATTCGGGTTGTATCCACTGGAGGCCACCTCACAGTTGCCACAGCT
GAGTCGTGGGTTGGGGCGTGGGAATGCAATGATGTGGGTGCCCATCAAGG
GTCAGTCGGCGGCATCGCAGCATCGCCATCATCCGTACAATCGTGTGGCC
GGAGCCAAGACTGCTTGCTGCAATAAGTCGCTGGTGGAGCTGGAAAAGGA
ATTGGGCGATAAGGGCACGTCCGGGGCAAGCGGCAGCACCAGTGGCCAAC
CGGCGGCCAGCAAATCCGCCTACTCCGTGGTGAATAGGAACGGCTTCCAG
GTGAGCATGAATGTGAAGCAGTTCGCCGCCAACGAACTGACCGTCAAGAC
CATCGATAACTGCATCGTGGTCGAGGGTCAGCACGACGAGAAGGAGGATG
GCCACGGGGTGATCTCGCGCCACTTCATCCGCAAGTACATCCTGCCCAAG
GGCTATGATCCCAACGAGGTGCACTCGACCCTCTCCTCGGACGGCATTCT
GACGGTGAAGGCGCCGCCACCACTTCCAGTCGTCAAAGGCAGCCTGGAAC
GACAGGAGCGCATCGTAGACATCCAGCAGATATCGCAGCAGCAGAAGGAT
AAGGATGCGCAGCCGCCAAAGCCGTCAGAGGTAGAGCAGCAGGCGGCAGC
TAGTGCCACCACTTCCACTTTAAATCCGACTGCACCCACACCCACTCCTT
CGCTCTCGCTCACTCTCGCCGAGAGCAACGGCAACGGTCAGGAAGAGACA
GAGATGGAAATGCCGGCTGTTTCGCCCCCCATTTCCAATGAGGCTGCTGC
TGCCGCTGCTGTTGCAGTGGAAGCCCCTTCCACCGCAGGAACCACTTCCA
GTGCCAACAATGGCGTTGCAGAACCAGAATCAGAGTCCATGGAAGTGGCG
TTGGCCAAAAACGAAGAGACTGCCAATGTGGATGAACCCACACCCAATCC
CGTTATAAGCATCGAAGAGGAGCAAAAGGCAGAGGATGCAAATGCCAACG
AAGTGCCCGTTGCCTCGAATAACGGCAATGGAGCAGTCGCAGCAGCCGAG
GATGTGGAAATGCCGCTGGCCAAGAAACCGGAAATCTCCACGGAAGACAG
CAAAGAGGAGCAGGCGGAGAAGGTTGATAAAGTAGAGAAAGTGGAGGAGA
AGGGCGGCGAGGAACTGGCAGCCGTAGATGCGGCCATTCTACTGGCCAAA
AACCAAGGCGAAAATGGAGCCACTGCAGCCAAAACCGAGGAACTGGCCAA
GGCAAGCTTTCTAGACCAT
BO18126.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:02:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hsp67Ba-RA | 1338 | CG4167-PA | 1..1335 | 17..1351 | 6675 | 100 | Plus |
Hsp27-RB | 642 | CG4466-PB | 265..443 | 392..570 | 295 | 77.7 | Plus |
Hsp27-RA | 642 | CG4466-PA | 265..443 | 392..570 | 295 | 77.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:02:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hsp67Ba-RA | 1733 | CG4167-RA | 96..1430 | 17..1351 | 6675 | 100 | Plus |
Hsp27-RB | 1632 | CG4466-RB | 388..566 | 392..570 | 295 | 77.7 | Plus |
Hsp27-RA | 1220 | CG4466-RA | 388..566 | 392..570 | 295 | 77.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:02:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9378105..9379439 | 1351..17 | 6675 | 100 | Minus |
3L | 28110227 | 3L | 9384450..9384628 | 392..570 | 295 | 77.7 | Plus |
Blast to na_te.dros performed 2014-11-27 13:02:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 1061..1136 | 686..762 | 112 | 62.3 | Plus |
BO18126.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:09:29 Download gff for
BO18126.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hsp67Ba-RA | 1..1338 | 17..1354 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:26:36 Download gff for
BO18126.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hsp67Ba-RA | 89..1435 | 10..1356 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:45:41 Download gff for
BO18126.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hsp67Ba-RA | 96..1430 | 17..1353 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:09:29 Download gff for
BO18126.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hsp67Ba-RA | 1..1338 | 17..1354 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:09:40 Download gff for
BO18126.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hsp67Ba-RA | 96..1430 | 17..1353 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:09:40 Download gff for
BO18126.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9378102..9379439 | 17..1353 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:45:41 Download gff for
BO18126.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9371202..9372539 | 17..1353 | 99 | | Minus |
BO18126.pep Sequence
Translation from 16 to 1369
> BO18126.pep
MSLIPFILDLAEELHDFNRSLAMDIDDSAGFGLYPLEATSQLPQLSRGLG
RGNAMMWVPIKGQSAASQHRHHPYNRVAGAKTACCNKSLVELEKELGDKG
TSGASGSTSGQPAASKSAYSVVNRNGFQVSMNVKQFAANELTVKTIDNCI
VVEGQHDEKEDGHGVISRHFIRKYILPKGYDPNEVHSTLSSDGILTVKAP
PPLPVVKGSLERQERIVDIQQISQQQKDKDAQPPKPSEVEQQAAASATTS
TLNPTAPTPTPSLSLTLAESNGNGQEETEMEMPAVSPPISNEAAAAAAVA
VEAPSTAGTTSSANNGVAEPESESMEVALAKNEETANVDEPTPNPVISIE
EEQKAEDANANEVPVASNNGNGAVAAAEDVEMPLAKKPEISTEDSKEEQA
EKVDKVEKVEEKGGEELAAVDAAILLAKNQGENGATAAKTEELAKASFLD
H
BO18126.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:44:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hsp67Ba-PA | 445 | CG4167-PA | 1..445 | 1..445 | 2242 | 100 | Plus |
Hsp27-PB | 213 | CG4466-PB | 1..198 | 1..238 | 363 | 39.7 | Plus |
Hsp27-PA | 213 | CG4466-PA | 1..198 | 1..238 | 363 | 39.7 | Plus |
Hsp23-PB | 186 | CG4463-PB | 29..179 | 68..238 | 307 | 40.9 | Plus |
Hsp23-PA | 186 | CG4463-PA | 29..179 | 68..238 | 307 | 40.9 | Plus |