Clone BO18126 Report

Search the DGRC for BO18126

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:181
Well:26
Vector:pDNR-Dual
Associated Gene/TranscriptHsp67Ba-RA
Protein status:BO18126.pep: validated full length
Sequenced Size:1369

Clone Sequence Records

BO18126.3prime Sequence

702 bp (605 high quality bases) assembled on 2006-10-13

> BO18126.3prime
ATGGTCTAGAAAGCTTGCCTTGGCCAGTTCCTCGGTTTTGGCTGCAGTGG
CTCCATTTTCGCCTTGGTTTTTGGCCAGTAAAATGGCCGCATCTACGGCT
GCCAGTTCCTCGCCGCCCTTCTCCTCCACTTTCTCTACTTTATCAACCTT
CTCCGCCTGCTCCTCTTTGCTGTCTTCCGTGGAGATTTCCGGTTTCTTGG
CCAGCGGCATTTCCACATCCTCGGCTGCTGCGACTGCTCCATTGCCGTTA
TTCGAGGCAACGGGCACTTCGTTGGCATTTGCATCCTCTGCCTTTTGCTC
CTCTTCGATGCTTATAACGGGATTGGGTGTGGGTTCATCCACATTGGCAG
TCTCTTCGTTTTTGGCCAACGCCACTTCCATGGACTCTGATTCTGGTTCT
GCAACGCCATTGTTGGCACTGGAAGTGGTTCCTGCGGTGGAAGGGGCTTC
CACTGCAACAGCAGCGGCAGCAGCAGCCTCATTGGAAATGGGGGGCGAAA
CAGCCGGCATTTCCATCTCTGTCTCTTCCTGACCGTTGCCGTTGCTCTCG
GCGAGAGTGAGCGAGAGCGAAGGAGTGGGTGTGGGTGCAGTCGGATTTAA
AGTGGAAGTGGTGGCACTAGCTGCCGCCTGCTGCTCTACCTCTGAACGGC
TTTGGCGGCTGCGCATCCTTATCCTTCTGCTGCTGCGATATCTGCTGGAA
TG

BO18126.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:58:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG4167-PA 1338 Hsp67Ba-RA 656..1335 699..19 3340 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:38:41
Subject Length Description Subject Range Query Range Score Percent Strand
Hsp67Ba-RA 1733 CG4167-RA 751..1430 699..19 3365 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:38:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9378105..9378784 19..699 3340 99.7 Plus
Blast to na_te.dros performed 2015-02-13 13:38:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3282..3310 447..475 109 86.2 Plus

BO18126.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:18:41 Download gff for BO18126.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4167-PA 654..1338 16..702 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:46:29 Download gff for BO18126.3prime
Subject Subject Range Query Range Percent Splice Strand
Hsp67Ba-RA 749..1435 14..702 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:04:58 Download gff for BO18126.3prime
Subject Subject Range Query Range Percent Splice Strand
Hsp67Ba-RA 749..1435 14..702 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:04:58 Download gff for BO18126.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9378100..9378786 14..702 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:46:29 Download gff for BO18126.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9371200..9371886 14..702 99   Plus

BO18126.5prime Sequence

781 bp (698 high quality bases) assembled on 2006-10-13

> BO18126.5prime
GAAGTTATCAGTCGACATGTCGCTGATACCGTTCATACTAGATTTGGCCG
AGGAGCTGCACGATTTCAATCGCAGCCTGGCAATGGATATAGATGATTCG
GCCGGATTCGGGTTGTATCCACTGGAGGCCACCTCACAGTTGCCACAGCT
GAGTCGTGGGTTGGGGCGTGGGAATGCAATGATGTGGGTGCCCATCAAGG
GTCAGTCGGCGGCATCGCAGCATCGCCATCATCCGTACAATCGTGTGGCC
GGAGCCAAGACTGCTTGCTGCAATAAGTCGCTGGTGGAGCTGGAAAAGGA
ATTGGGCGATAAGGGCACGTCCGGGGCAAGCGGCAGCACCAGTGGCCAAC
CGGCGGCCAGCAAATCCGCCTACTCCGTGGTGAATAGGAACGGCTTCCAG
GTGAGCATGAATGTGAAGCAGTTCGCCGCCAACGAACTGACCGTCAAGAC
CATCGATAACTGCATCGTGGTCGAGGGTCAGCACGACGAGAAGGAGGATG
GCCACGGGGTGATCTCGCGCCACTTCATCCGCAAGTACATCCTGCCCAAG
GGCTATGATCCCAACGAGGTGCACTCGACCCTCTCCTCGGACGGCATTCT
GACGGTGAAGGCGCCGCCACCACTTCCAGTCGTCAAAGGCAGCCTGGAAC
GACAGGAGCGCATCGTAGACATCCAGCAGATATCGCAGCAGCAGAAGGAT
AAGGATGCGCAGCCGCCAAAGCCGTCAGAGGTAGAGCAGCAGGCGGCAGC
TAGTGCCCCCACTTCCACTTTAAATCCGACT

BO18126.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:59:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG4167-PA 1338 Hsp67Ba-RA 1..765 17..781 3800 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:13:27
Subject Length Description Subject Range Query Range Score Percent Strand
Hsp67Ba-RA 1733 CG4167-RA 96..860 17..781 3810 99.9 Plus
Hsp27-RB 1632 CG4466-RB 388..566 392..570 295 77.7 Plus
Hsp27-RA 1220 CG4466-RA 388..566 392..570 295 77.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:13:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9378675..9379439 781..17 3810 99.9 Minus
3L 28110227 3L 9384450..9384628 392..570 295 77.7 Plus
Blast to na_te.dros performed 2015-02-12 11:13:24
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1061..1136 686..762 112 62.3 Plus

BO18126.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:18:41 Download gff for BO18126.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4167-PA 1..765 17..781 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:35:42 Download gff for BO18126.5prime
Subject Subject Range Query Range Percent Splice Strand
Hsp67Ba-RA 89..860 10..781 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:22:37 Download gff for BO18126.5prime
Subject Subject Range Query Range Percent Splice Strand
Hsp67Ba-RA 89..860 10..781 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:22:37 Download gff for BO18126.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9378675..9379446 10..781 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:35:42 Download gff for BO18126.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9371775..9372546 10..781 99   Minus

BO18126.complete Sequence

1369 bp assembled on 2007-03-23

GenBank Submission: FJ634328

> BO18126.complete
GAAGTTATCAGTCGACATGTCGCTGATACCGTTCATACTAGATTTGGCCG
AGGAGCTGCACGATTTCAATCGCAGCCTGGCAATGGATATAGATGATTCG
GCCGGATTCGGGTTGTATCCACTGGAGGCCACCTCACAGTTGCCACAGCT
GAGTCGTGGGTTGGGGCGTGGGAATGCAATGATGTGGGTGCCCATCAAGG
GTCAGTCGGCGGCATCGCAGCATCGCCATCATCCGTACAATCGTGTGGCC
GGAGCCAAGACTGCTTGCTGCAATAAGTCGCTGGTGGAGCTGGAAAAGGA
ATTGGGCGATAAGGGCACGTCCGGGGCAAGCGGCAGCACCAGTGGCCAAC
CGGCGGCCAGCAAATCCGCCTACTCCGTGGTGAATAGGAACGGCTTCCAG
GTGAGCATGAATGTGAAGCAGTTCGCCGCCAACGAACTGACCGTCAAGAC
CATCGATAACTGCATCGTGGTCGAGGGTCAGCACGACGAGAAGGAGGATG
GCCACGGGGTGATCTCGCGCCACTTCATCCGCAAGTACATCCTGCCCAAG
GGCTATGATCCCAACGAGGTGCACTCGACCCTCTCCTCGGACGGCATTCT
GACGGTGAAGGCGCCGCCACCACTTCCAGTCGTCAAAGGCAGCCTGGAAC
GACAGGAGCGCATCGTAGACATCCAGCAGATATCGCAGCAGCAGAAGGAT
AAGGATGCGCAGCCGCCAAAGCCGTCAGAGGTAGAGCAGCAGGCGGCAGC
TAGTGCCACCACTTCCACTTTAAATCCGACTGCACCCACACCCACTCCTT
CGCTCTCGCTCACTCTCGCCGAGAGCAACGGCAACGGTCAGGAAGAGACA
GAGATGGAAATGCCGGCTGTTTCGCCCCCCATTTCCAATGAGGCTGCTGC
TGCCGCTGCTGTTGCAGTGGAAGCCCCTTCCACCGCAGGAACCACTTCCA
GTGCCAACAATGGCGTTGCAGAACCAGAATCAGAGTCCATGGAAGTGGCG
TTGGCCAAAAACGAAGAGACTGCCAATGTGGATGAACCCACACCCAATCC
CGTTATAAGCATCGAAGAGGAGCAAAAGGCAGAGGATGCAAATGCCAACG
AAGTGCCCGTTGCCTCGAATAACGGCAATGGAGCAGTCGCAGCAGCCGAG
GATGTGGAAATGCCGCTGGCCAAGAAACCGGAAATCTCCACGGAAGACAG
CAAAGAGGAGCAGGCGGAGAAGGTTGATAAAGTAGAGAAAGTGGAGGAGA
AGGGCGGCGAGGAACTGGCAGCCGTAGATGCGGCCATTCTACTGGCCAAA
AACCAAGGCGAAAATGGAGCCACTGCAGCCAAAACCGAGGAACTGGCCAA
GGCAAGCTTTCTAGACCAT

BO18126.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:02:04
Subject Length Description Subject Range Query Range Score Percent Strand
Hsp67Ba-RA 1338 CG4167-PA 1..1335 17..1351 6675 100 Plus
Hsp27-RB 642 CG4466-PB 265..443 392..570 295 77.7 Plus
Hsp27-RA 642 CG4466-PA 265..443 392..570 295 77.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:02:07
Subject Length Description Subject Range Query Range Score Percent Strand
Hsp67Ba-RA 1733 CG4167-RA 96..1430 17..1351 6675 100 Plus
Hsp27-RB 1632 CG4466-RB 388..566 392..570 295 77.7 Plus
Hsp27-RA 1220 CG4466-RA 388..566 392..570 295 77.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:02:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9378105..9379439 1351..17 6675 100 Minus
3L 28110227 3L 9384450..9384628 392..570 295 77.7 Plus
Blast to na_te.dros performed 2014-11-27 13:02:03
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1061..1136 686..762 112 62.3 Plus

BO18126.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:09:29 Download gff for BO18126.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp67Ba-RA 1..1338 17..1354 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:26:36 Download gff for BO18126.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp67Ba-RA 89..1435 10..1356 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:45:41 Download gff for BO18126.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp67Ba-RA 96..1430 17..1353 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:09:29 Download gff for BO18126.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp67Ba-RA 1..1338 17..1354 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:09:40 Download gff for BO18126.complete
Subject Subject Range Query Range Percent Splice Strand
Hsp67Ba-RA 96..1430 17..1353 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:09:40 Download gff for BO18126.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9378102..9379439 17..1353 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:45:41 Download gff for BO18126.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9371202..9372539 17..1353 99   Minus

BO18126.pep Sequence

Translation from 16 to 1369

> BO18126.pep
MSLIPFILDLAEELHDFNRSLAMDIDDSAGFGLYPLEATSQLPQLSRGLG
RGNAMMWVPIKGQSAASQHRHHPYNRVAGAKTACCNKSLVELEKELGDKG
TSGASGSTSGQPAASKSAYSVVNRNGFQVSMNVKQFAANELTVKTIDNCI
VVEGQHDEKEDGHGVISRHFIRKYILPKGYDPNEVHSTLSSDGILTVKAP
PPLPVVKGSLERQERIVDIQQISQQQKDKDAQPPKPSEVEQQAAASATTS
TLNPTAPTPTPSLSLTLAESNGNGQEETEMEMPAVSPPISNEAAAAAAVA
VEAPSTAGTTSSANNGVAEPESESMEVALAKNEETANVDEPTPNPVISIE
EEQKAEDANANEVPVASNNGNGAVAAAEDVEMPLAKKPEISTEDSKEEQA
EKVDKVEKVEEKGGEELAAVDAAILLAKNQGENGATAAKTEELAKASFLD
H

BO18126.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:44:38
Subject Length Description Subject Range Query Range Score Percent Strand
Hsp67Ba-PA 445 CG4167-PA 1..445 1..445 2242 100 Plus
Hsp27-PB 213 CG4466-PB 1..198 1..238 363 39.7 Plus
Hsp27-PA 213 CG4466-PA 1..198 1..238 363 39.7 Plus
Hsp23-PB 186 CG4463-PB 29..179 68..238 307 40.9 Plus
Hsp23-PA 186 CG4463-PA 29..179 68..238 307 40.9 Plus