Clone BO18127 Report

Search the DGRC for BO18127

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:181
Well:27
Vector:pDNR-Dual
Associated Gene/TranscriptOsi2-RA
Protein status:BO18127.pep: validated full length
Sequenced Size:1204

Clone Sequence Records

BO18127.3prime Sequence

731 bp (696 high quality bases) assembled on 2006-10-13

> BO18127.3prime
ATGGTCTAGAAAGCTTGCGCTCTTCTGAGGCTGTTGCTCGGCGACAATGT
CCTTGCCGGAGTTTCGTCCATAGTATCCGTTGTAGGCCGCCTCCTGCGGA
TCCCCGAAGCTGACGGAGTTGCCGCCAACCTGCTGGCCCTGGACCTGCTG
GCCCTGGTAGCTCTTGCTGTAGTAGTCGGTGTAGGGCTTGGCAAAGCTTG
GCTCCTGGCGGTAGTAAGGTCCTGGAGCGCCTCCATGGCCGCCCTCAAAG
TGCTCGTGGTGGTGGTAGTAGGTGGCAGCTCCCACTCCCTGGGGGTTGTA
CTCGGGGAAGGTGTTCTTGCCGCCAAACAGGCCCGACAGTCCACCGCCGA
ATGCTCCTCCAACACCACCTGGCGGACGGCACAGCTTGAAGTAGGCGAAC
AGACCGGGCAGGACAATAGCGGCCAATCCAAGGATCTTCTTGAGGCCAGC
GATTCCAAGGATGAAGGGCAGGAAGAGCAGCAACTTCAGCTTGAAGATCT
TCAGCACCAGCAGCAGGGGAATGATCATCTTCTTCAACTTCTTACGCGAG
AAATGTCCAGCCCGCTGTCCATCATCAATGAGGTCCAGTTCGCCATCAAT
GTCGTTTCCGATGAAGCGTGCTTCATAACGACCGGCTTCGGTGAGTTCCT
CGGGCCACTCGACCTCTAGAGCCGTGGACTTGATGAAGCGTTCGGCCCTT
CGGAGTCCATATTTCAGCAGCTGATTCCACT

BO18127.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG1148-PB 1173 Osi2-RB 458..1170 731..19 3565 100 Minus
CG1148-PA 1173 Osi2-RA 458..1170 731..19 3565 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:36:54
Subject Length Description Subject Range Query Range Score Percent Strand
Osi2-RC 1391 CG1148-RC 564..1276 731..19 3565 100 Minus
Osi2-RA 1474 CG1148-RA 647..1359 731..19 3565 100 Minus
Osi2-RB 1449 CG1148-RB 622..1334 731..19 3565 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:36:46
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6212849..6213378 548..19 2650 100 Minus
3R 32079331 3R 6212388..6212528 689..549 705 100 Minus
3R 32079331 3R 6212197..6212239 731..689 215 100 Minus
Blast to na_te.dros performed 2015-02-10 16:36:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2917..2971 461..515 113 67.3 Plus

BO18127.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:18:42 Download gff for BO18127.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1148-PA 458..1173 15..731 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:18:14 Download gff for BO18127.3prime
Subject Subject Range Query Range Percent Splice Strand
Osi2-RB 622..1344 6..731 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:03:24 Download gff for BO18127.3prime
Subject Subject Range Query Range Percent Splice Strand
Osi2-RB 622..1344 6..731 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:03:24 Download gff for BO18127.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 6212197..6212239 689..731 100 -> Minus
3R 6212389..6212528 549..688 100 -> Minus
3R 6212849..6213388 6..548 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:18:14 Download gff for BO18127.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2038111..2038250 549..688 100 -> Minus
arm_3R 2037919..2037961 689..731 100 -> Minus
arm_3R 2038571..2039110 6..548 99   Minus

BO18127.5prime Sequence

764 bp (729 high quality bases) assembled on 2006-10-13

> BO18127.5prime
GAAGTTATCAGTCGACATGGCAATGAGAGCGCTCATCTTTCTGGCCCTCG
CCACTCTGGTGGCTGGCGAAGGTCTTCGGCTTCCGGACCAGCAGTCGTCC
AACAACATCCAGCAAGTCTACGCACCGCAGCCACCGGCTCAGCAGATCCA
GCAACCCCAGCAGCAACAACAGTTTCCACAGGCACAGCAGCCAGGAGTTG
GCGAGGAACGCGGACGCTCCTCCCTGCTCAGCATCTTTGGCCTGGGCAAC
GACAACGATCCCTTCCTGGCCAGGACCAACAGCAACTGCCTCGGCGGCGA
CCTCTCCGAGTGCTTCAAGACTCAGGCGCTCAACACCTTCGACGAGATCT
TCTTCAAGGACCAGTACAAGCTCTCCGACTTTGCTCGTGTGGTGCGACTG
CCAGAAACCCAGCAGAGGTCCTTGCTGCAGGAGCCATTCGAGTACTCCGA
GGAGCCACGTGGCGACGACGACGAGTGGAATCAGCTGCTGAAATATGGAC
TCCGAAGGGCCGAACGCTTCATCAAGTCCACGGCTCTAGAGGTCGAGTGG
CCCGAGGAACTCACCGAAGCCGGTCGTTATGAAGCACGCTTCATCGGAAA
CGACATTGATGGCGAACTGGACCTCATTGATGATGGACAGCGGGCTGGAC
ATTTCTCGCGTAAGAAGTTGAAGAAGATGATCATTCCCCTGCTGCTGGTG
CTGAAAATCTTCAAGCTGAAGTTGCTGCTCTTCCTGCCCTTCATCCTTGG
AATCGCTGGCCTCA

BO18127.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG1148-PB 1173 Osi2-RB 1..748 17..764 3715 99.8 Plus
CG1148-PA 1173 Osi2-RA 1..748 17..764 3715 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:05:25
Subject Length Description Subject Range Query Range Score Percent Strand
Osi2-RC 1391 CG1148-RC 106..854 16..764 3730 99.9 Plus
Osi2-RA 1474 CG1148-RA 189..937 16..764 3730 99.9 Plus
Osi2-RB 1449 CG1148-RB 164..912 16..764 3730 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:05:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6211461..6211815 16..370 1775 100 Plus
3R 32079331 3R 6212093..6212239 370..516 735 100 Plus
3R 32079331 3R 6212388..6212528 516..656 705 100 Plus
3R 32079331 3R 6212849..6212956 657..764 525 99.1 Plus
Blast to na_te.dros performed 2015-02-12 11:05:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2517 85..289 168 57.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2765..3025 99..348 161 55.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6791..6886 100..193 160 64.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6770..6865 100..190 144 64.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6732..6833 87..191 139 61.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6728..6815 100..191 135 64.1 Plus
roo 9092 roo DM_ROO 9092bp 1081..1150 124..193 134 65.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2393 110..193 132 61.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6532..6585 151..204 125 74.5 Plus
roo 9092 roo DM_ROO 9092bp 1059..1160 87..191 120 62.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6803..6934 77..211 119 57.7 Plus
Dsim\ninja 6644 Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). 2234..2272 157..197 119 80.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2469 140..301 118 54.9 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3259..3330 121..191 114 63.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6730..6796 124..193 109 64.3 Plus
roo 9092 roo DM_ROO 9092bp 1060..1111 148..200 109 69.8 Plus
Dsim\ninja 6644 Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). 1302..1334 451..482 108 84.8 Plus

BO18127.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:18:42 Download gff for BO18127.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1148-PA 1..747 17..763 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:43:59 Download gff for BO18127.5prime
Subject Subject Range Query Range Percent Splice Strand
Osi2-RB 159..911 10..763 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:20:09 Download gff for BO18127.5prime
Subject Subject Range Query Range Percent Splice Strand
Osi2-RB 159..911 10..763 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:20:09 Download gff for BO18127.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 6211454..6211814 5..369 98 -> Plus
3R 6212093..6212239 370..516 100 -> Plus
3R 6212389..6212528 517..656 100 -> Plus
3R 6212849..6212955 657..763 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:43:59 Download gff for BO18127.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2037176..2037536 5..369 98 -> Plus
arm_3R 2037815..2037961 370..516 100 -> Plus
arm_3R 2038111..2038250 517..656 100 -> Plus
arm_3R 2038571..2038677 657..763 99   Plus

BO18127.complete Sequence

1204 bp assembled on 2006-10-11

GenBank Submission: FJ634329

> BO18127.complete
GAAGTTATCAGTCGACATGGCAATGAGAGCGCTCATCTTTCTGGCCCTCG
CCACTCTGGTGGCTGGCGAAGGTCTTCGGCTTCCGGACCAGCAGTCGTCC
AACAACATCCAGCAAGTCTACGCACCGCAGCCACCGGCTCAGCAGATCCA
GCAACCCCAGCAGCAACAACAGTTTCCACAGGCACAGCAGCCAGGAGTTG
GCGAGGAACGCGGACGCTCCTCCCTGCTCAGCATCTTTGGCCTGGGCAAC
GACAACGATCCCTTCCTGGCCAGGACCAACAGCAACTGCCTCGGCGGCGA
CCTCTCCGAGTGCTTCAAGACTCAGGCGCTCAACACCTTCGACGAGATCT
TCTTCAAGGACCAGTACAAGCTCTCCGACTTTGCTCGTGTGGTGCGACTG
CCAGAAACCCAGCAGAGGTCCTTGCTGCAGGAGCCATTCGAGTACTCCGA
GGAGCCACGTGGCGACGACGACGAGTGGAATCAGCTGCTGAAATATGGAC
TCCGAAGGGCCGAACGCTTCATCAAGTCCACGGCTCTAGAGGTCGAGTGG
CCCGAGGAACTCACCGAAGCCGGTCGTTATGAAGCACGCTTCATCGGAAA
CGACATTGATGGCGAACTGGACCTCATTGATGATGGACAGCGGGCTGGAC
ATTTCTCGCGTAAGAAGTTGAAGAAGATGATCATTCCCCTGCTGCTGGTG
CTGAAGATCTTCAAGCTGAAGTTGCTGCTCTTCCTGCCCTTCATCCTTGG
AATCGCTGGCCTCAAGAAGATCCTTGGATTGGCCGCTATTGTCCTGCCCG
GTCTGTTCGCCTACTTCAAGCTGTGCCGTCCGCCAGGTGGTGTTGGAGGA
GCATTCGGCGGTGGACTGTCGGGCCTGTTTGGCGGCAAGAACACCTTCCC
CGAGTACAACCCCCAGGGAGTGGGAGCTGCCACCTACTACCACCACCACG
AGCACTTTGAGGGCGGCCATGGAGGCGCTCCAGGACCTTACTACCGCCAG
GAGCCAAGCTTTGCCAAGCCCTACACCGACTACTACAGCAAGAGCTACCA
GGGCCAGCAGGTCCAGGGCCAGCAGGTTGGCGGCAACTCCGTCAGCTTCG
GGGATCCGCAGGAGGCGGCCTACAACGGATACTATGGACGAAACTCCGGC
AAGGACATTGTCGCCGAGCAACAGCCTCAGAAGAGCGCAAGCTTTCTAGA
CCAT

BO18127.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:11:18
Subject Length Description Subject Range Query Range Score Percent Strand
Osi2-RC 1173 CG1148-PC 1..1170 17..1186 5850 100 Plus
Osi2-RA 1173 CG1148-PA 1..1170 17..1186 5850 100 Plus
Osi2-RB 1173 CG1148-PB 1..1170 17..1186 5850 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:11:19
Subject Length Description Subject Range Query Range Score Percent Strand
Osi2-RC 1391 CG1148-RC 106..1276 16..1186 5855 100 Plus
Osi2-RA 1474 CG1148-RA 189..1359 16..1186 5855 100 Plus
Osi2-RB 1449 CG1148-RB 164..1334 16..1186 5855 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:11:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6212849..6213378 657..1186 2650 100 Plus
3R 32079331 3R 6211461..6211815 16..370 1775 100 Plus
3R 32079331 3R 6212093..6212239 370..516 735 100 Plus
3R 32079331 3R 6212388..6212528 516..656 705 100 Plus
Blast to na_te.dros performed 2014-11-27 10:11:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2517 85..289 168 57.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6791..6886 100..193 160 64.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6770..6865 100..190 144 64.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6732..6833 87..191 139 61.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6728..6815 100..191 135 64.1 Plus
roo 9092 roo DM_ROO 9092bp 1081..1150 124..193 134 65.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2393 110..193 132 61.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6532..6585 151..204 125 74.5 Plus
roo 9092 roo DM_ROO 9092bp 1059..1160 87..191 120 62.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6803..6934 77..211 119 57.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2469 140..301 118 54.9 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3259..3330 121..191 114 63.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2917..2971 744..690 113 67.3 Minus

BO18127.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:34 Download gff for BO18127.complete
Subject Subject Range Query Range Percent Splice Strand
Osi2-RA 1..1173 17..1190 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:40:51 Download gff for BO18127.complete
Subject Subject Range Query Range Percent Splice Strand
Osi2-RA 180..1369 7..1199 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:05:48 Download gff for BO18127.complete
Subject Subject Range Query Range Percent Splice Strand
Osi2-RB 165..1334 17..1188 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:35 Download gff for BO18127.complete
Subject Subject Range Query Range Percent Splice Strand
Osi2-RA 180..1369 7..1199 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:15:13 Download gff for BO18127.complete
Subject Subject Range Query Range Percent Splice Strand
Osi2-RB 165..1334 17..1188 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:15:13 Download gff for BO18127.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6212093..6212239 370..516 100 -> Plus
3R 6212389..6212528 517..656 100 -> Plus
3R 6211462..6211814 17..369 100 -> Plus
3R 6212849..6213378 657..1188 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:05:48 Download gff for BO18127.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2037184..2037536 17..369 100 -> Plus
arm_3R 2037815..2037961 370..516 100 -> Plus
arm_3R 2038111..2038250 517..656 100 -> Plus
arm_3R 2038571..2039100 657..1188 99   Plus

BO18127.pep Sequence

Translation from 16 to 1204

> BO18127.pep
MAMRALIFLALATLVAGEGLRLPDQQSSNNIQQVYAPQPPAQQIQQPQQQ
QQFPQAQQPGVGEERGRSSLLSIFGLGNDNDPFLARTNSNCLGGDLSECF
KTQALNTFDEIFFKDQYKLSDFARVVRLPETQQRSLLQEPFEYSEEPRGD
DDEWNQLLKYGLRRAERFIKSTALEVEWPEELTEAGRYEARFIGNDIDGE
LDLIDDGQRAGHFSRKKLKKMIIPLLLVLKIFKLKLLLFLPFILGIAGLK
KILGLAAIVLPGLFAYFKLCRPPGGVGGAFGGGLSGLFGGKNTFPEYNPQ
GVGAATYYHHHEHFEGGHGGAPGPYYRQEPSFAKPYTDYYSKSYQGQQVQ
GQQVGGNSVSFGDPQEAAYNGYYGRNSGKDIVAEQQPQKSASFLDH

BO18127.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:07:27
Subject Length Description Subject Range Query Range Score Percent Strand
Osi2-PC 390 CG1148-PC 1..390 1..390 2057 100 Plus
Osi2-PA 390 CG1148-PA 1..390 1..390 2057 100 Plus
Osi2-PB 390 CG1148-PB 1..390 1..390 2057 100 Plus