Clone Sequence Records
BO18127.3prime Sequence
731 bp (696 high quality bases) assembled on 2006-10-13
> BO18127.3prime
ATGGTCTAGAAAGCTTGCGCTCTTCTGAGGCTGTTGCTCGGCGACAATGT
CCTTGCCGGAGTTTCGTCCATAGTATCCGTTGTAGGCCGCCTCCTGCGGA
TCCCCGAAGCTGACGGAGTTGCCGCCAACCTGCTGGCCCTGGACCTGCTG
GCCCTGGTAGCTCTTGCTGTAGTAGTCGGTGTAGGGCTTGGCAAAGCTTG
GCTCCTGGCGGTAGTAAGGTCCTGGAGCGCCTCCATGGCCGCCCTCAAAG
TGCTCGTGGTGGTGGTAGTAGGTGGCAGCTCCCACTCCCTGGGGGTTGTA
CTCGGGGAAGGTGTTCTTGCCGCCAAACAGGCCCGACAGTCCACCGCCGA
ATGCTCCTCCAACACCACCTGGCGGACGGCACAGCTTGAAGTAGGCGAAC
AGACCGGGCAGGACAATAGCGGCCAATCCAAGGATCTTCTTGAGGCCAGC
GATTCCAAGGATGAAGGGCAGGAAGAGCAGCAACTTCAGCTTGAAGATCT
TCAGCACCAGCAGCAGGGGAATGATCATCTTCTTCAACTTCTTACGCGAG
AAATGTCCAGCCCGCTGTCCATCATCAATGAGGTCCAGTTCGCCATCAAT
GTCGTTTCCGATGAAGCGTGCTTCATAACGACCGGCTTCGGTGAGTTCCT
CGGGCCACTCGACCTCTAGAGCCGTGGACTTGATGAAGCGTTCGGCCCTT
CGGAGTCCATATTTCAGCAGCTGATTCCACT
BO18127.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1148-PB | 1173 | Osi2-RB | 458..1170 | 731..19 | 3565 | 100 | Minus |
CG1148-PA | 1173 | Osi2-RA | 458..1170 | 731..19 | 3565 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:36:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Osi2-RC | 1391 | CG1148-RC | 564..1276 | 731..19 | 3565 | 100 | Minus |
Osi2-RA | 1474 | CG1148-RA | 647..1359 | 731..19 | 3565 | 100 | Minus |
Osi2-RB | 1449 | CG1148-RB | 622..1334 | 731..19 | 3565 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:36:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6212849..6213378 | 548..19 | 2650 | 100 | Minus |
3R | 32079331 | 3R | 6212388..6212528 | 689..549 | 705 | 100 | Minus |
3R | 32079331 | 3R | 6212197..6212239 | 731..689 | 215 | 100 | Minus |
Blast to na_te.dros performed 2015-02-10 16:36:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2917..2971 | 461..515 | 113 | 67.3 | Plus |
BO18127.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:18:42 Download gff for
BO18127.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1148-PA | 458..1173 | 15..731 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:18:14 Download gff for
BO18127.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi2-RB | 622..1344 | 6..731 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:03:24 Download gff for
BO18127.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi2-RB | 622..1344 | 6..731 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:03:24 Download gff for
BO18127.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6212197..6212239 | 689..731 | 100 | -> | Minus |
3R | 6212389..6212528 | 549..688 | 100 | -> | Minus |
3R | 6212849..6213388 | 6..548 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:18:14 Download gff for
BO18127.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2038111..2038250 | 549..688 | 100 | -> | Minus |
arm_3R | 2037919..2037961 | 689..731 | 100 | -> | Minus |
arm_3R | 2038571..2039110 | 6..548 | 99 | | Minus |
BO18127.5prime Sequence
764 bp (729 high quality bases) assembled on 2006-10-13
> BO18127.5prime
GAAGTTATCAGTCGACATGGCAATGAGAGCGCTCATCTTTCTGGCCCTCG
CCACTCTGGTGGCTGGCGAAGGTCTTCGGCTTCCGGACCAGCAGTCGTCC
AACAACATCCAGCAAGTCTACGCACCGCAGCCACCGGCTCAGCAGATCCA
GCAACCCCAGCAGCAACAACAGTTTCCACAGGCACAGCAGCCAGGAGTTG
GCGAGGAACGCGGACGCTCCTCCCTGCTCAGCATCTTTGGCCTGGGCAAC
GACAACGATCCCTTCCTGGCCAGGACCAACAGCAACTGCCTCGGCGGCGA
CCTCTCCGAGTGCTTCAAGACTCAGGCGCTCAACACCTTCGACGAGATCT
TCTTCAAGGACCAGTACAAGCTCTCCGACTTTGCTCGTGTGGTGCGACTG
CCAGAAACCCAGCAGAGGTCCTTGCTGCAGGAGCCATTCGAGTACTCCGA
GGAGCCACGTGGCGACGACGACGAGTGGAATCAGCTGCTGAAATATGGAC
TCCGAAGGGCCGAACGCTTCATCAAGTCCACGGCTCTAGAGGTCGAGTGG
CCCGAGGAACTCACCGAAGCCGGTCGTTATGAAGCACGCTTCATCGGAAA
CGACATTGATGGCGAACTGGACCTCATTGATGATGGACAGCGGGCTGGAC
ATTTCTCGCGTAAGAAGTTGAAGAAGATGATCATTCCCCTGCTGCTGGTG
CTGAAAATCTTCAAGCTGAAGTTGCTGCTCTTCCTGCCCTTCATCCTTGG
AATCGCTGGCCTCA
BO18127.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1148-PB | 1173 | Osi2-RB | 1..748 | 17..764 | 3715 | 99.8 | Plus |
CG1148-PA | 1173 | Osi2-RA | 1..748 | 17..764 | 3715 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:05:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Osi2-RC | 1391 | CG1148-RC | 106..854 | 16..764 | 3730 | 99.9 | Plus |
Osi2-RA | 1474 | CG1148-RA | 189..937 | 16..764 | 3730 | 99.9 | Plus |
Osi2-RB | 1449 | CG1148-RB | 164..912 | 16..764 | 3730 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:05:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6211461..6211815 | 16..370 | 1775 | 100 | Plus |
3R | 32079331 | 3R | 6212093..6212239 | 370..516 | 735 | 100 | Plus |
3R | 32079331 | 3R | 6212388..6212528 | 516..656 | 705 | 100 | Plus |
3R | 32079331 | 3R | 6212849..6212956 | 657..764 | 525 | 99.1 | Plus |
Blast to na_te.dros performed 2015-02-12 11:05:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2517 | 85..289 | 168 | 57.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2765..3025 | 99..348 | 161 | 55.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6791..6886 | 100..193 | 160 | 64.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6770..6865 | 100..190 | 144 | 64.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..6833 | 87..191 | 139 | 61.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..6815 | 100..191 | 135 | 64.1 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1081..1150 | 124..193 | 134 | 65.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2393 | 110..193 | 132 | 61.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6532..6585 | 151..204 | 125 | 74.5 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1059..1160 | 87..191 | 120 | 62.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6803..6934 | 77..211 | 119 | 57.7 | Plus |
Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 2234..2272 | 157..197 | 119 | 80.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2469 | 140..301 | 118 | 54.9 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3259..3330 | 121..191 | 114 | 63.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6730..6796 | 124..193 | 109 | 64.3 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1060..1111 | 148..200 | 109 | 69.8 | Plus |
Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 1302..1334 | 451..482 | 108 | 84.8 | Plus |
BO18127.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:18:42 Download gff for
BO18127.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1148-PA | 1..747 | 17..763 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:43:59 Download gff for
BO18127.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi2-RB | 159..911 | 10..763 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:20:09 Download gff for
BO18127.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi2-RB | 159..911 | 10..763 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:20:09 Download gff for
BO18127.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6211454..6211814 | 5..369 | 98 | -> | Plus |
3R | 6212093..6212239 | 370..516 | 100 | -> | Plus |
3R | 6212389..6212528 | 517..656 | 100 | -> | Plus |
3R | 6212849..6212955 | 657..763 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:43:59 Download gff for
BO18127.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2037176..2037536 | 5..369 | 98 | -> | Plus |
arm_3R | 2037815..2037961 | 370..516 | 100 | -> | Plus |
arm_3R | 2038111..2038250 | 517..656 | 100 | -> | Plus |
arm_3R | 2038571..2038677 | 657..763 | 99 | | Plus |
BO18127.complete Sequence
1204 bp assembled on 2006-10-11
GenBank Submission: FJ634329
> BO18127.complete
GAAGTTATCAGTCGACATGGCAATGAGAGCGCTCATCTTTCTGGCCCTCG
CCACTCTGGTGGCTGGCGAAGGTCTTCGGCTTCCGGACCAGCAGTCGTCC
AACAACATCCAGCAAGTCTACGCACCGCAGCCACCGGCTCAGCAGATCCA
GCAACCCCAGCAGCAACAACAGTTTCCACAGGCACAGCAGCCAGGAGTTG
GCGAGGAACGCGGACGCTCCTCCCTGCTCAGCATCTTTGGCCTGGGCAAC
GACAACGATCCCTTCCTGGCCAGGACCAACAGCAACTGCCTCGGCGGCGA
CCTCTCCGAGTGCTTCAAGACTCAGGCGCTCAACACCTTCGACGAGATCT
TCTTCAAGGACCAGTACAAGCTCTCCGACTTTGCTCGTGTGGTGCGACTG
CCAGAAACCCAGCAGAGGTCCTTGCTGCAGGAGCCATTCGAGTACTCCGA
GGAGCCACGTGGCGACGACGACGAGTGGAATCAGCTGCTGAAATATGGAC
TCCGAAGGGCCGAACGCTTCATCAAGTCCACGGCTCTAGAGGTCGAGTGG
CCCGAGGAACTCACCGAAGCCGGTCGTTATGAAGCACGCTTCATCGGAAA
CGACATTGATGGCGAACTGGACCTCATTGATGATGGACAGCGGGCTGGAC
ATTTCTCGCGTAAGAAGTTGAAGAAGATGATCATTCCCCTGCTGCTGGTG
CTGAAGATCTTCAAGCTGAAGTTGCTGCTCTTCCTGCCCTTCATCCTTGG
AATCGCTGGCCTCAAGAAGATCCTTGGATTGGCCGCTATTGTCCTGCCCG
GTCTGTTCGCCTACTTCAAGCTGTGCCGTCCGCCAGGTGGTGTTGGAGGA
GCATTCGGCGGTGGACTGTCGGGCCTGTTTGGCGGCAAGAACACCTTCCC
CGAGTACAACCCCCAGGGAGTGGGAGCTGCCACCTACTACCACCACCACG
AGCACTTTGAGGGCGGCCATGGAGGCGCTCCAGGACCTTACTACCGCCAG
GAGCCAAGCTTTGCCAAGCCCTACACCGACTACTACAGCAAGAGCTACCA
GGGCCAGCAGGTCCAGGGCCAGCAGGTTGGCGGCAACTCCGTCAGCTTCG
GGGATCCGCAGGAGGCGGCCTACAACGGATACTATGGACGAAACTCCGGC
AAGGACATTGTCGCCGAGCAACAGCCTCAGAAGAGCGCAAGCTTTCTAGA
CCAT
BO18127.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:11:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Osi2-RC | 1173 | CG1148-PC | 1..1170 | 17..1186 | 5850 | 100 | Plus |
Osi2-RA | 1173 | CG1148-PA | 1..1170 | 17..1186 | 5850 | 100 | Plus |
Osi2-RB | 1173 | CG1148-PB | 1..1170 | 17..1186 | 5850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:11:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Osi2-RC | 1391 | CG1148-RC | 106..1276 | 16..1186 | 5855 | 100 | Plus |
Osi2-RA | 1474 | CG1148-RA | 189..1359 | 16..1186 | 5855 | 100 | Plus |
Osi2-RB | 1449 | CG1148-RB | 164..1334 | 16..1186 | 5855 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:11:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6212849..6213378 | 657..1186 | 2650 | 100 | Plus |
3R | 32079331 | 3R | 6211461..6211815 | 16..370 | 1775 | 100 | Plus |
3R | 32079331 | 3R | 6212093..6212239 | 370..516 | 735 | 100 | Plus |
3R | 32079331 | 3R | 6212388..6212528 | 516..656 | 705 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 10:11:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2517 | 85..289 | 168 | 57.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6791..6886 | 100..193 | 160 | 64.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6770..6865 | 100..190 | 144 | 64.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..6833 | 87..191 | 139 | 61.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..6815 | 100..191 | 135 | 64.1 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1081..1150 | 124..193 | 134 | 65.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2393 | 110..193 | 132 | 61.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6532..6585 | 151..204 | 125 | 74.5 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1059..1160 | 87..191 | 120 | 62.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6803..6934 | 77..211 | 119 | 57.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2469 | 140..301 | 118 | 54.9 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3259..3330 | 121..191 | 114 | 63.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2917..2971 | 744..690 | 113 | 67.3 | Minus |
BO18127.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:34 Download gff for
BO18127.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi2-RA | 1..1173 | 17..1190 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:40:51 Download gff for
BO18127.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi2-RA | 180..1369 | 7..1199 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:05:48 Download gff for
BO18127.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi2-RB | 165..1334 | 17..1188 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:35 Download gff for
BO18127.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi2-RA | 180..1369 | 7..1199 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:15:13 Download gff for
BO18127.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Osi2-RB | 165..1334 | 17..1188 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:15:13 Download gff for
BO18127.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6212093..6212239 | 370..516 | 100 | -> | Plus |
3R | 6212389..6212528 | 517..656 | 100 | -> | Plus |
3R | 6211462..6211814 | 17..369 | 100 | -> | Plus |
3R | 6212849..6213378 | 657..1188 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:05:48 Download gff for
BO18127.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2037184..2037536 | 17..369 | 100 | -> | Plus |
arm_3R | 2037815..2037961 | 370..516 | 100 | -> | Plus |
arm_3R | 2038111..2038250 | 517..656 | 100 | -> | Plus |
arm_3R | 2038571..2039100 | 657..1188 | 99 | | Plus |
BO18127.pep Sequence
Translation from 16 to 1204
> BO18127.pep
MAMRALIFLALATLVAGEGLRLPDQQSSNNIQQVYAPQPPAQQIQQPQQQ
QQFPQAQQPGVGEERGRSSLLSIFGLGNDNDPFLARTNSNCLGGDLSECF
KTQALNTFDEIFFKDQYKLSDFARVVRLPETQQRSLLQEPFEYSEEPRGD
DDEWNQLLKYGLRRAERFIKSTALEVEWPEELTEAGRYEARFIGNDIDGE
LDLIDDGQRAGHFSRKKLKKMIIPLLLVLKIFKLKLLLFLPFILGIAGLK
KILGLAAIVLPGLFAYFKLCRPPGGVGGAFGGGLSGLFGGKNTFPEYNPQ
GVGAATYYHHHEHFEGGHGGAPGPYYRQEPSFAKPYTDYYSKSYQGQQVQ
GQQVGGNSVSFGDPQEAAYNGYYGRNSGKDIVAEQQPQKSASFLDH
BO18127.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:07:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Osi2-PC | 390 | CG1148-PC | 1..390 | 1..390 | 2057 | 100 | Plus |
Osi2-PA | 390 | CG1148-PA | 1..390 | 1..390 | 2057 | 100 | Plus |
Osi2-PB | 390 | CG1148-PB | 1..390 | 1..390 | 2057 | 100 | Plus |