Clone Sequence Records
BO18128.3prime Sequence
749 bp (743 high quality bases) assembled on 2006-10-13
> BO18128.3prime
ATGGTCTAGAAAGCTTGCTAGTCTACTGCTCTCCGCGCCATTTTGTCGTG
GCGGAGAAATCTGGGACTTGTCGTATCCATTGCTGGACATCTGCAGATGC
TGCGGAAGTTGGGCAGGACGTCCGTTGGAGGGCAAGGTCTCGTCCACGGA
GAACACGGAGTTGTCGTGTCCGTGCATGTGGCGAGCATTGAGCACGGCAT
CCGGATGGCTCTTCGGCGACTCCGGCTGTCCCACCTCATCAGGCTTGCCT
TCCAGCAGGAAACAGGTGATGAAGAAGAGAATAGAACTGATGCCGTAGAA
TCCAGCGTAGAAGATCATGATCGAACCGCGATAGCCCAGGATCTTGGCCA
CCGGATCCACCAGGATGGGCAGGTTGCCGCCAATGTTGTTCATCACAAAC
AGAAAGACGCCAATGGTCGAGGAGCGAACGCGCAGCGGAACAATCTCCAC
AACAATGGCAAAGACAATACCGAACCACATCTCGGCGAAGAAATAACTCA
GGCCCAGCGTGATCATGGCCCACAGCGGGTCAAAGTAGACCGATCCGAAG
GCTGGTAGTGTGGCAATTAGCTGGCTAACAGCCAATACAAAGGCGCGTGA
TCGAATGCCCATCTTGGCGACAATCTTGTCCGACACAATGCCACCGACGA
CCACACCCACGCTGCCAATGCCAATGGTGACCCCAAAGAGCCACCAGCCC
AAGTCCACGTCGGGGAAGTACGTGTTGTAGTAAAGATCGGCGTTGTAGG
BO18128.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:59:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14439-PA | 1608 | CG14439-RA | 875..1605 | 749..19 | 3630 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:38:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14439-RC | 2296 | CG14439-RC | 1254..1984 | 749..19 | 3640 | 99.9 | Minus |
| CG14439-RB | 2428 | CG14439-RB | 1386..2116 | 749..19 | 3640 | 99.9 | Minus |
| CG14439-RA | 2096 | CG14439-RA | 1054..1784 | 749..19 | 3640 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:38:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6754650..6755113 | 749..286 | 2305 | 99.8 | Minus |
| X | 23542271 | X | 6755172..6755440 | 287..19 | 1345 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 13:38:47 has no hits.
BO18128.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:18:43 Download gff for
BO18128.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14439-PA | 875..1608 | 18..749 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:46:31 Download gff for
BO18128.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14439-RA | 1054..1790 | 11..749 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:05:14 Download gff for
BO18128.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14439-RA | 1054..1790 | 11..749 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 16:05:14 Download gff for
BO18128.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6754650..6755111 | 288..749 | 99 | -> | Minus |
| X | 6755172..6755446 | 11..287 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:46:31 Download gff for
BO18128.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6648683..6649144 | 288..749 | 99 | -> | Minus |
| arm_X | 6649205..6649479 | 11..287 | 98 | | Minus |
BO18128.5prime Sequence
768 bp (767 high quality bases) assembled on 2006-10-13
> BO18128.5prime
GAAGTTATCAGTCGACATGATACCTATTCTGGAGAAACTCAGCGGGTTCT
ACAACACCTACGTCTTGGCCGTACTCACCATTGGTTATATCCTGGGCGAA
TTGGGTCACTATCTGATCGGAGTGACCTCCAAGCAGACGGCCATTGAGTT
GGACTACGGTGATCATGCCTGCCAGCAGAACACCTCGATGTTCAATCGCC
ACGAGTTGCCCACCCAGTGCTCGGCGGTTATGAATGAGACCAGCTGCTAT
GCCCTTGATTTCAACGGCACTGGCTATTGCGAGTGGAACTACAATGGACT
GGGCATCGACTACCAGATCCTGGCCGGACCCACCTTCATCCTGATTTTCA
CCATCGCCGGCGTATTTATGGGCTTCGCAGCGGACAAGTACAATCGCGTC
AACATGCTGACTGTGTGCACAGTGATCTTCGGCATTGCCATGATTCTGCA
GGGCACCGTTAAGGAATACTGGCAGCTGGTAATTTTGCGTATGATCATGG
CAGCCGGCGAGTCGGGTTGCAATCCCTTGGCCACGGGCATTATGTCCGAT
ATCTTTCCGGAGGATAAGAGAGCACTAGTCATGGCCATCTTCAACTGGGG
AATTTATGGAGGATATGGAATCGCCTTCCCCGTGGGTCGCTACATCACCA
AGCTGAATTTCTGGAATCTGGGATGGCGCGTTTGCTACTTGGGCGCCGGT
GTCCTTACCGTAATTATGGCCGCACTGACCGGAACCACTTTGCGGGAGCC
GGAGCGCAAGGCCATCGG
BO18128.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 18:59:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14439-PA | 1608 | CG14439-RA | 1..752 | 17..768 | 3760 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:54:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14439-RC | 2296 | CG14439-RC | 380..1131 | 17..768 | 3760 | 100 | Plus |
| CG14439-RB | 2428 | CG14439-RB | 512..1263 | 17..768 | 3760 | 100 | Plus |
| CG14439-RA | 2096 | CG14439-RA | 180..931 | 17..768 | 3760 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:53:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6753776..6754527 | 17..768 | 3760 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:53:57 has no hits.
BO18128.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:18:44 Download gff for
BO18128.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14439-PA | 1..752 | 17..768 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 22:43:06 Download gff for
BO18128.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14439-RA | 180..931 | 17..768 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:53:40 Download gff for
BO18128.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14439-RA | 180..931 | 17..768 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:53:40 Download gff for
BO18128.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6753776..6754527 | 17..768 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 22:43:06 Download gff for
BO18128.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6647809..6648560 | 17..768 | 100 | | Plus |
BO18128.complete Sequence
1639 bp assembled on 2007-03-23
GenBank Submission: FJ634330
> BO18128.complete
GAAGTTATCAGTCGACATGATACCTATTCTGGAGAAACTCAGCGGGTTCT
ACAACACCTACGTCTTGGCCGTACTCACCATTGGTTATATCCTGGGCGAA
TTGGGTCACTATCTGATCGGAGTGACCTCCAAGCAGACGGCCATTGAGTT
GGACTACGGTGATCATGCCTGCCAGCAGAACACCTCGATGTTCAATCGCC
ACGAGTTGCCCACCCAGTGCTCGGCGGTTATGAATGAGACCAGCTGCTAT
GCCCTTGATTTCAACGGCACTGGCTATTGCGAGTGGAACTACAATGGACT
GGGCATCGACTACCAGATCCTGGCCGGACCCACCTTCATCCTGATTTTCA
CCATCGCCGGCGTATTTATGGGCTTCGCAGCGGACAAGTACAATCGCGTC
AACATGCTGACTGTGTGCACAGTGATCTTCGGCATTGCCATGATTCTGCA
GGGCACCGTTAAGGAATACTGGCAGCTGGTAATTTTGCGTATGATCATGG
CAGCCGGCGAGTCGGGTTGCAATCCCTTGGCCACGGGCATTATGTCCGAT
ATCTTTCCGGAGGATAAGAGAGCACTAGTCATGGCCATCTTCAACTGGGG
AATTTATGGAGGATATGGAATCGCCTTCCCCGTGGGTCGCTACATCACCA
AGCTGAATTTCTGGAATCTGGGATGGCGCGTTTGCTACTTGGGCGCCGGT
GTCCTTACCGTAATTATGGCCGCACTGACCGGAACCACTTTGCGGGAGCC
GGAGCGCAAGGCCATCGGTGAGGGTGACCGCCAGACGTCTAGCGGCAAAC
CAGTGAGCCTGTGGCAAGTTATCAAGAATCCGGCAATGATCATGTTGATG
ATTGCCGCGTCCATCCGTCACTGCGGTGGCATGACCTTTGCCTACAACGC
CGATCTCTACTACAACACGTACTTCCCCGACGTGGACTTGGGCTGGTGGC
TCTTTGGGGTCACCATTGGCATTGGCAGCGTGGGTGTGGTCGTCGGTGGC
ATTGTGTCGGACAAGATTGTCGCCAAGATGGGCATTCGATCACGCGCCTT
TGTATTGGCTGTTAGCCAGCTAATTGCCACACTACCAGCCTTCGGATCGG
TCTACTTTGACCCGCTGTGGGCCATGATCACGCTGGGCCTGAGTTATTTC
TTCGCCGAGATGTGGTTCGGTATTGTCTTTGCCATTGTTGTGGAGATTGT
TCCGCTGCGCGTTCGCTCCTCGACCATTGGCGTCTTTCTGTTTGTGATGA
ACAACATTGGCGGCAACCTGCCCATCCTGGTGGATCCGGTGGCCAAGATC
CTGGGCTATCGCGGTTCGATCATGATCTTCTACGCTGGATTCTACGGCAT
CAGTTCTATTCTCTTCTTCATCACCTGTTTCCTGCTGGAAGGCAAGCCTG
ATGAGGTGGGACAGCCGGAGTCGCCGAAGAGCCATCCGGATGCCGTGCTC
AATGCTCGCCACATGCACGGACACGACAACTCCGTGTTCTCCGTGGACGA
GACCTTGCCCTCCAACGGACGTCCTGCCCAACTTCCGCAGCATCTGCAGA
TGTCCAGCAATGGATACGACAAGTCCCAGATTTCTCCGCCACGACAAAAT
GGCGCGGAGAGCAGTAGACTAGCAAGCTTTCTAGACCAT
BO18128.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:53:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14439-RC | 1608 | CG14439-PC | 1..1605 | 17..1621 | 8025 | 100 | Plus |
| CG14439-RB | 1608 | CG14439-PB | 1..1605 | 17..1621 | 8025 | 100 | Plus |
| CG14439-RA | 1608 | CG14439-PA | 1..1605 | 17..1621 | 8025 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:53:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14439-RC | 2296 | CG14439-RC | 380..1984 | 17..1621 | 8025 | 100 | Plus |
| CG14439-RB | 2428 | CG14439-RB | 512..2116 | 17..1621 | 8025 | 100 | Plus |
| CG14439-RA | 2096 | CG14439-RA | 180..1784 | 17..1621 | 8025 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:53:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6753776..6755113 | 17..1354 | 6690 | 100 | Plus |
| X | 23542271 | X | 6755172..6755440 | 1353..1621 | 1345 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:53:06 has no hits.
BO18128.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:09:17 Download gff for
BO18128.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14439-RA | 1..1608 | 17..1622 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:26:22 Download gff for
BO18128.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14439-RA | 175..1782 | 17..1622 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:57:42 Download gff for
BO18128.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14439-RA | 180..1784 | 17..1623 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:09:18 Download gff for
BO18128.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14439-RA | 175..1782 | 17..1622 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:57:08 Download gff for
BO18128.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14439-RA | 180..1784 | 17..1623 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:57:08 Download gff for
BO18128.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6753776..6755111 | 17..1352 | 100 | -> | Plus |
| X | 6755172..6755440 | 1353..1623 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:57:42 Download gff for
BO18128.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6649205..6649473 | 1353..1623 | 99 | | Plus |
| arm_X | 6647809..6649144 | 17..1352 | 100 | -> | Plus |
BO18128.pep Sequence
Translation from 16 to 1639
> BO18128.pep
MIPILEKLSGFYNTYVLAVLTIGYILGELGHYLIGVTSKQTAIELDYGDH
ACQQNTSMFNRHELPTQCSAVMNETSCYALDFNGTGYCEWNYNGLGIDYQ
ILAGPTFILIFTIAGVFMGFAADKYNRVNMLTVCTVIFGIAMILQGTVKE
YWQLVILRMIMAAGESGCNPLATGIMSDIFPEDKRALVMAIFNWGIYGGY
GIAFPVGRYITKLNFWNLGWRVCYLGAGVLTVIMAALTGTTLREPERKAI
GEGDRQTSSGKPVSLWQVIKNPAMIMLMIAASIRHCGGMTFAYNADLYYN
TYFPDVDLGWWLFGVTIGIGSVGVVVGGIVSDKIVAKMGIRSRAFVLAVS
QLIATLPAFGSVYFDPLWAMITLGLSYFFAEMWFGIVFAIVVEIVPLRVR
SSTIGVFLFVMNNIGGNLPILVDPVAKILGYRGSIMIFYAGFYGISSILF
FITCFLLEGKPDEVGQPESPKSHPDAVLNARHMHGHDNSVFSVDETLPSN
GRPAQLPQHLQMSSNGYDKSQISPPRQNGAESSRLASFLDH
BO18128.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:33:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14439-PC | 535 | CG14439-PC | 1..535 | 1..535 | 2815 | 100 | Plus |
| CG14439-PB | 535 | CG14439-PB | 1..535 | 1..535 | 2815 | 100 | Plus |
| CG14439-PA | 535 | CG14439-PA | 1..535 | 1..535 | 2815 | 100 | Plus |
