Clone Sequence Records
BO18146.3prime Sequence
581 bp (581 high quality bases) assembled on 2006-10-13
> BO18146.3prime
ATGGTCTAGAAAGCTTGCTCCCGAACCAGTAGTGCTCTCCGTGGAGCTGC
TATCAGTGGAGCTATCGGTGGAGCTATCGGTAGAGCTATCGGTGGAGCTA
TCGGTGGAGCTATCGGTGGAGCTATCAGTGGAGCTGGCAGAGGAGCTGCT
GTCGGTGGAGCTGGAGGAGCTGCTAGTTGTGCTGCTGGTGTCGGCCAAGG
AACTCTCCGTTGTCGTCCACCAAGGTCTTGGGCGACGAGGACGTGGACGT
GGGCCCCAACCGCCAGGACCGCCGAATCCACCATTGAAGCTTCCGGGACC
GCCAAAGCGGCCGGGACCTCCGAATCCTCCACCACCGCCAAGTCCTCCAG
GCCCTCCAAAGCGACCAGGTCCGCCGAAGCCACCGGGGCCACCAGTACCA
CCAGGACCACCGCGACCGCCGAAGCCACCGCCTCCACGTCCTCCGAATCC
TCCAAGACTTCGGCCACCGCCTCCGCCGCCACCGCGTCCACCACGTCTTC
CGCCTCCCCCTTGGGCCACGACAACTGCCACCAGGGCCAGCAGGGTAATT
GCAATGTAGGCACGCATGTCGACTGATAACT
BO18146.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10918-PA | 552 | CG10918-RA | 1..549 | 567..19 | 2745 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:35:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10918-RA | 643 | CG10918-RA | 14..562 | 567..19 | 2745 | 100 | Minus |
CG10918-RA | 643 | CG10918-RA | 419..496 | 123..49 | 215 | 85.9 | Minus |
CG10918-RA | 643 | CG10918-RA | 458..532 | 162..85 | 215 | 85.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:35:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 21428695..21429243 | 19..567 | 2745 | 100 | Plus |
X | 23542271 | X | 21428725..21428787 | 73..135 | 255 | 93.7 | Plus |
X | 23542271 | X | 21428749..21428811 | 49..111 | 255 | 93.7 | Plus |
X | 23542271 | X | 21428725..21428775 | 85..135 | 210 | 94.1 | Plus |
X | 23542271 | X | 21428761..21428811 | 49..99 | 210 | 94.1 | Plus |
Blast to na_te.dros performed on 2015-02-03 06:35:28 has no hits.
BO18146.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:19:02 Download gff for
BO18146.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10918-PA | 1..552 | 18..567 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:29:19 Download gff for
BO18146.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10918-RA | 5..568 | 11..574 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:37:44 Download gff for
BO18146.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10918-RA | 5..568 | 11..574 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:37:44 Download gff for
BO18146.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 21428689..21429252 | 11..574 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:29:19 Download gff for
BO18146.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21299716..21300279 | 11..574 | 98 | | Plus |
BO18146.5prime Sequence
581 bp (581 high quality bases) assembled on 2006-10-13
> BO18146.5prime
GAAGTTATCAGTCGACATGCGTGCCTACATTGCAATTACCCTGCTGGCCC
TGGTGGCAGTTGTCGTGGCCCAAGGGGGAGGCGGAAGACGTGGTGGACGC
GGTGGCGGCGGAGGCGGTGGCCGAAGTCTTGGAGGATTCGGAGGACGTGG
AGGCGGTGGCTTCGGCGGTCGCGGTGGTCCTGGTGGTACTGGTGGCCCCG
GTGGCTTCGGCGGACCTGGTCGCTTTGGAGGGCCTGGAGGACTTGGCGGT
GGTGGAGGATTCGGAGGTCCCGGCCGCTTTGGCGGTCCCGGAAGCTTCAA
TGGTGGATTCGGCGGTCCTGGCGGTTGGGGCCCACGTCCACGTCCTCGTC
GCCCAAGACCTTGGTGGACGACAACGGAGAGTTCCTTGGCCGACACCAGC
AGCACAACTAGCAGCTCCTCCAGCTCCACCGACAGCAGCTCCTCTGCCAG
CTCCACTGATAGCTCCACCGATAGCTCCACCGATAGCTCCACCGATAGCT
CTACCGATAGCTCCACCGATAGCTCCACTGATAGCAGCTCCACGGAGAGC
ACTACTGGTTCGGGAGCAAGCTTTCTAGACC
BO18146.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10918-PA | 552 | CG10918-RA | 1..549 | 17..565 | 2745 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:27:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10918-RA | 643 | CG10918-RA | 14..562 | 17..565 | 2745 | 100 | Plus |
CG10918-RA | 643 | CG10918-RA | 419..496 | 461..535 | 215 | 85.9 | Plus |
CG10918-RA | 643 | CG10918-RA | 458..532 | 422..499 | 215 | 85.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:27:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 21428695..21429243 | 565..17 | 2745 | 100 | Minus |
X | 23542271 | X | 21428725..21428787 | 511..449 | 255 | 93.7 | Minus |
X | 23542271 | X | 21428749..21428811 | 535..473 | 255 | 93.7 | Minus |
X | 23542271 | X | 21428725..21428775 | 499..449 | 210 | 94.1 | Minus |
X | 23542271 | X | 21428761..21428811 | 535..485 | 210 | 94.1 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:27:51 has no hits.
BO18146.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:19:02 Download gff for
BO18146.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10918-PA | 1..552 | 17..566 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:21:51 Download gff for
BO18146.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10918-RA | 5..568 | 10..573 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:03:25 Download gff for
BO18146.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10918-RA | 5..568 | 10..573 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:03:25 Download gff for
BO18146.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 21428689..21429252 | 10..573 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:21:51 Download gff for
BO18146.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21299716..21300279 | 10..573 | 98 | | Minus |
BO18146.complete Sequence
583 bp assembled on 2006-10-11
GenBank Submission: FJ634332
> BO18146.complete
GAAGTTATCAGTCGACATGCGTGCCTACATTGCAATTACCCTGCTGGCCC
TGGTGGCAGTTGTCGTGGCCCAAGGGGGAGGCGGAAGACGTGGTGGACGC
GGTGGCGGCGGAGGCGGTGGCCGAAGTCTTGGAGGATTCGGAGGACGTGG
AGGCGGTGGCTTCGGCGGTCGCGGTGGTCCTGGTGGTACTGGTGGCCCCG
GTGGCTTCGGCGGACCTGGTCGCTTTGGAGGGCCTGGAGGACTTGGCGGT
GGTGGAGGATTCGGAGGTCCCGGCCGCTTTGGCGGTCCCGGAAGCTTCAA
TGGTGGATTCGGCGGTCCTGGCGGTTGGGGCCCACGTCCACGTCCTCGTC
GCCCAAGACCTTGGTGGACGACAACGGAGAGTTCCTTGGCCGACACCAGC
AGCACAACTAGCAGCTCCTCCAGCTCCACCGACAGCAGCTCCTCTGCCAG
CTCCACTGATAGCTCCACCGATAGCTCCACCGATAGCTCCACCGATAGCT
CTACCGATAGCTCCACCGATAGCTCCACTGATAGCAGCTCCACGGAGAGC
ACTACTGGTTCGGGAGCAAGCTTTCTAGACCAT
BO18146.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:54:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10918-RA | 552 | CG10918-PA | 1..549 | 17..565 | 2745 | 100 | Plus |
CG10918-RA | 552 | CG10918-PA | 433..495 | 473..535 | 255 | 93.7 | Plus |
CG10918-RA | 552 | CG10918-PA | 457..519 | 449..511 | 255 | 93.7 | Plus |
CG10918-RA | 552 | CG10918-PA | 433..483 | 485..535 | 210 | 94.1 | Plus |
CG10918-RA | 552 | CG10918-PA | 469..519 | 449..499 | 210 | 94.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:54:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10918-RA | 643 | CG10918-RA | 14..562 | 17..565 | 2745 | 100 | Plus |
CG10918-RA | 643 | CG10918-RA | 446..508 | 473..535 | 255 | 93.7 | Plus |
CG10918-RA | 643 | CG10918-RA | 470..532 | 449..511 | 255 | 93.7 | Plus |
CG10918-RA | 643 | CG10918-RA | 446..496 | 485..535 | 210 | 94.1 | Plus |
CG10918-RA | 643 | CG10918-RA | 482..532 | 449..499 | 210 | 94.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:54:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 21428695..21429243 | 565..17 | 2745 | 100 | Minus |
X | 23542271 | X | 21428725..21428787 | 511..449 | 255 | 93.7 | Minus |
X | 23542271 | X | 21428749..21428811 | 535..473 | 255 | 93.7 | Minus |
X | 23542271 | X | 21428725..21428775 | 499..449 | 210 | 94.1 | Minus |
X | 23542271 | X | 21428761..21428811 | 535..485 | 210 | 94.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:54:10 has no hits.
BO18146.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:36 Download gff for
BO18146.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10918-RA | 1..552 | 17..566 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:40:53 Download gff for
BO18146.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10918-RA | 1..552 | 17..566 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:28:08 Download gff for
BO18146.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10918-RA | 14..562 | 17..567 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:36 Download gff for
BO18146.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10918-RA | 1..552 | 17..566 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:58:38 Download gff for
BO18146.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10918-RA | 14..562 | 17..567 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:58:38 Download gff for
BO18146.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 21428693..21429243 | 17..567 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:28:08 Download gff for
BO18146.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21299720..21300270 | 17..567 | 99 | | Minus |
BO18146.pep Sequence
Translation from 16 to 583
> BO18146.pep
MRAYIAITLLALVAVVVAQGGGGRRGGRGGGGGGGRSLGGFGGRGGGGFG
GRGGPGGTGGPGGFGGPGRFGGPGGLGGGGGFGGPGRFGGPGSFNGGFGG
PGGWGPRPRPRRPRPWWTTTESSLADTSSTTSSSSSSTDSSSSASSTDSS
TDSSTDSSTDSSTDSSTDSSTDSSSTESTTGSGASFLDH
BO18146.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:07:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10918-PA | 183 | CG10918-PA | 1..183 | 1..183 | 981 | 100 | Plus |
lcs-PA | 145 | CG12794-PA | 1..145 | 1..168 | 348 | 50.9 | Plus |
CG8157-PB | 113 | CG8157-PB | 3..100 | 5..102 | 258 | 60.8 | Plus |
CG8157-PA | 113 | CG8157-PA | 3..100 | 5..102 | 258 | 60.8 | Plus |
CG7299-PC | 177 | CG7299-PC | 37..170 | 21..157 | 258 | 42.5 | Plus |
CG8157-PB | 113 | CG8157-PB | 21..93 | 45..105 | 184 | 58.9 | Plus |
CG8157-PA | 113 | CG8157-PA | 21..93 | 45..105 | 184 | 58.9 | Plus |
CG8157-PB | 113 | CG8157-PB | 55..107 | 20..90 | 144 | 50.7 | Plus |
CG8157-PA | 113 | CG8157-PA | 55..107 | 20..90 | 144 | 50.7 | Plus |