Clone BO18146 Report

Search the DGRC for BO18146

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:181
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptCG10918-RA
Protein status:BO18146.pep: validated full length
Sequenced Size:583

Clone Sequence Records

BO18146.3prime Sequence

581 bp (581 high quality bases) assembled on 2006-10-13

> BO18146.3prime
ATGGTCTAGAAAGCTTGCTCCCGAACCAGTAGTGCTCTCCGTGGAGCTGC
TATCAGTGGAGCTATCGGTGGAGCTATCGGTAGAGCTATCGGTGGAGCTA
TCGGTGGAGCTATCGGTGGAGCTATCAGTGGAGCTGGCAGAGGAGCTGCT
GTCGGTGGAGCTGGAGGAGCTGCTAGTTGTGCTGCTGGTGTCGGCCAAGG
AACTCTCCGTTGTCGTCCACCAAGGTCTTGGGCGACGAGGACGTGGACGT
GGGCCCCAACCGCCAGGACCGCCGAATCCACCATTGAAGCTTCCGGGACC
GCCAAAGCGGCCGGGACCTCCGAATCCTCCACCACCGCCAAGTCCTCCAG
GCCCTCCAAAGCGACCAGGTCCGCCGAAGCCACCGGGGCCACCAGTACCA
CCAGGACCACCGCGACCGCCGAAGCCACCGCCTCCACGTCCTCCGAATCC
TCCAAGACTTCGGCCACCGCCTCCGCCGCCACCGCGTCCACCACGTCTTC
CGCCTCCCCCTTGGGCCACGACAACTGCCACCAGGGCCAGCAGGGTAATT
GCAATGTAGGCACGCATGTCGACTGATAACT

BO18146.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG10918-PA 552 CG10918-RA 1..549 567..19 2745 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:35:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG10918-RA 643 CG10918-RA 14..562 567..19 2745 100 Minus
CG10918-RA 643 CG10918-RA 419..496 123..49 215 85.9 Minus
CG10918-RA 643 CG10918-RA 458..532 162..85 215 85.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:35:25
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21428695..21429243 19..567 2745 100 Plus
X 23542271 X 21428725..21428787 73..135 255 93.7 Plus
X 23542271 X 21428749..21428811 49..111 255 93.7 Plus
X 23542271 X 21428725..21428775 85..135 210 94.1 Plus
X 23542271 X 21428761..21428811 49..99 210 94.1 Plus
Blast to na_te.dros performed on 2015-02-03 06:35:28 has no hits.

BO18146.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:19:02 Download gff for BO18146.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10918-PA 1..552 18..567 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:29:19 Download gff for BO18146.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10918-RA 5..568 11..574 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:37:44 Download gff for BO18146.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10918-RA 5..568 11..574 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 07:37:44 Download gff for BO18146.3prime
Subject Subject Range Query Range Percent Splice Strand
X 21428689..21429252 11..574 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:29:19 Download gff for BO18146.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 21299716..21300279 11..574 98   Plus

BO18146.5prime Sequence

581 bp (581 high quality bases) assembled on 2006-10-13

> BO18146.5prime
GAAGTTATCAGTCGACATGCGTGCCTACATTGCAATTACCCTGCTGGCCC
TGGTGGCAGTTGTCGTGGCCCAAGGGGGAGGCGGAAGACGTGGTGGACGC
GGTGGCGGCGGAGGCGGTGGCCGAAGTCTTGGAGGATTCGGAGGACGTGG
AGGCGGTGGCTTCGGCGGTCGCGGTGGTCCTGGTGGTACTGGTGGCCCCG
GTGGCTTCGGCGGACCTGGTCGCTTTGGAGGGCCTGGAGGACTTGGCGGT
GGTGGAGGATTCGGAGGTCCCGGCCGCTTTGGCGGTCCCGGAAGCTTCAA
TGGTGGATTCGGCGGTCCTGGCGGTTGGGGCCCACGTCCACGTCCTCGTC
GCCCAAGACCTTGGTGGACGACAACGGAGAGTTCCTTGGCCGACACCAGC
AGCACAACTAGCAGCTCCTCCAGCTCCACCGACAGCAGCTCCTCTGCCAG
CTCCACTGATAGCTCCACCGATAGCTCCACCGATAGCTCCACCGATAGCT
CTACCGATAGCTCCACCGATAGCTCCACTGATAGCAGCTCCACGGAGAGC
ACTACTGGTTCGGGAGCAAGCTTTCTAGACC

BO18146.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG10918-PA 552 CG10918-RA 1..549 17..565 2745 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:27:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG10918-RA 643 CG10918-RA 14..562 17..565 2745 100 Plus
CG10918-RA 643 CG10918-RA 419..496 461..535 215 85.9 Plus
CG10918-RA 643 CG10918-RA 458..532 422..499 215 85.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:27:47
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21428695..21429243 565..17 2745 100 Minus
X 23542271 X 21428725..21428787 511..449 255 93.7 Minus
X 23542271 X 21428749..21428811 535..473 255 93.7 Minus
X 23542271 X 21428725..21428775 499..449 210 94.1 Minus
X 23542271 X 21428761..21428811 535..485 210 94.1 Minus
Blast to na_te.dros performed on 2015-02-11 17:27:51 has no hits.

BO18146.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:19:02 Download gff for BO18146.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10918-PA 1..552 17..566 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:21:51 Download gff for BO18146.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10918-RA 5..568 10..573 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:03:25 Download gff for BO18146.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10918-RA 5..568 10..573 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:03:25 Download gff for BO18146.5prime
Subject Subject Range Query Range Percent Splice Strand
X 21428689..21429252 10..573 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:21:51 Download gff for BO18146.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 21299716..21300279 10..573 98   Minus

BO18146.complete Sequence

583 bp assembled on 2006-10-11

GenBank Submission: FJ634332

> BO18146.complete
GAAGTTATCAGTCGACATGCGTGCCTACATTGCAATTACCCTGCTGGCCC
TGGTGGCAGTTGTCGTGGCCCAAGGGGGAGGCGGAAGACGTGGTGGACGC
GGTGGCGGCGGAGGCGGTGGCCGAAGTCTTGGAGGATTCGGAGGACGTGG
AGGCGGTGGCTTCGGCGGTCGCGGTGGTCCTGGTGGTACTGGTGGCCCCG
GTGGCTTCGGCGGACCTGGTCGCTTTGGAGGGCCTGGAGGACTTGGCGGT
GGTGGAGGATTCGGAGGTCCCGGCCGCTTTGGCGGTCCCGGAAGCTTCAA
TGGTGGATTCGGCGGTCCTGGCGGTTGGGGCCCACGTCCACGTCCTCGTC
GCCCAAGACCTTGGTGGACGACAACGGAGAGTTCCTTGGCCGACACCAGC
AGCACAACTAGCAGCTCCTCCAGCTCCACCGACAGCAGCTCCTCTGCCAG
CTCCACTGATAGCTCCACCGATAGCTCCACCGATAGCTCCACCGATAGCT
CTACCGATAGCTCCACCGATAGCTCCACTGATAGCAGCTCCACGGAGAGC
ACTACTGGTTCGGGAGCAAGCTTTCTAGACCAT

BO18146.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:54:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG10918-RA 552 CG10918-PA 1..549 17..565 2745 100 Plus
CG10918-RA 552 CG10918-PA 433..495 473..535 255 93.7 Plus
CG10918-RA 552 CG10918-PA 457..519 449..511 255 93.7 Plus
CG10918-RA 552 CG10918-PA 433..483 485..535 210 94.1 Plus
CG10918-RA 552 CG10918-PA 469..519 449..499 210 94.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:54:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG10918-RA 643 CG10918-RA 14..562 17..565 2745 100 Plus
CG10918-RA 643 CG10918-RA 446..508 473..535 255 93.7 Plus
CG10918-RA 643 CG10918-RA 470..532 449..511 255 93.7 Plus
CG10918-RA 643 CG10918-RA 446..496 485..535 210 94.1 Plus
CG10918-RA 643 CG10918-RA 482..532 449..499 210 94.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:54:09
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21428695..21429243 565..17 2745 100 Minus
X 23542271 X 21428725..21428787 511..449 255 93.7 Minus
X 23542271 X 21428749..21428811 535..473 255 93.7 Minus
X 23542271 X 21428725..21428775 499..449 210 94.1 Minus
X 23542271 X 21428761..21428811 535..485 210 94.1 Minus
Blast to na_te.dros performed on 2014-11-27 13:54:10 has no hits.

BO18146.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:36 Download gff for BO18146.complete
Subject Subject Range Query Range Percent Splice Strand
CG10918-RA 1..552 17..566 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:40:53 Download gff for BO18146.complete
Subject Subject Range Query Range Percent Splice Strand
CG10918-RA 1..552 17..566 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:28:08 Download gff for BO18146.complete
Subject Subject Range Query Range Percent Splice Strand
CG10918-RA 14..562 17..567 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:36 Download gff for BO18146.complete
Subject Subject Range Query Range Percent Splice Strand
CG10918-RA 1..552 17..566 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:58:38 Download gff for BO18146.complete
Subject Subject Range Query Range Percent Splice Strand
CG10918-RA 14..562 17..567 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:58:38 Download gff for BO18146.complete
Subject Subject Range Query Range Percent Splice Strand
X 21428693..21429243 17..567 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:28:08 Download gff for BO18146.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 21299720..21300270 17..567 99   Minus

BO18146.pep Sequence

Translation from 16 to 583

> BO18146.pep
MRAYIAITLLALVAVVVAQGGGGRRGGRGGGGGGGRSLGGFGGRGGGGFG
GRGGPGGTGGPGGFGGPGRFGGPGGLGGGGGFGGPGRFGGPGSFNGGFGG
PGGWGPRPRPRRPRPWWTTTESSLADTSSTTSSSSSSTDSSSSASSTDSS
TDSSTDSSTDSSTDSSTDSSTDSSSTESTTGSGASFLDH

BO18146.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:07:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG10918-PA 183 CG10918-PA 1..183 1..183 981 100 Plus
lcs-PA 145 CG12794-PA 1..145 1..168 348 50.9 Plus
CG8157-PB 113 CG8157-PB 3..100 5..102 258 60.8 Plus
CG8157-PA 113 CG8157-PA 3..100 5..102 258 60.8 Plus
CG7299-PC 177 CG7299-PC 37..170 21..157 258 42.5 Plus
CG8157-PB 113 CG8157-PB 21..93 45..105 184 58.9 Plus
CG8157-PA 113 CG8157-PA 21..93 45..105 184 58.9 Plus
CG8157-PB 113 CG8157-PB 55..107 20..90 144 50.7 Plus
CG8157-PA 113 CG8157-PA 55..107 20..90 144 50.7 Plus