Clone Sequence Records
BO18149.3prime Sequence
806 bp (724 high quality bases) assembled on 2006-10-13
> BO18149.3prime
ATGGTCTAGAAAGCTTGCACCGGCGGCAGGGTCCTTCTTGGTTTTCTCCT
TTTTGCCTTTCTGCTTCTCGGCGGCGGCCAACTCCAGATCAATGGGAGCG
GGCTTGACGAACGGAATCTCATCCTGGAACTTCGCCGGCATGTACTTCTT
CAATGGCTCCGGCACCTTGATGCCCGTCTCTGTCTGATGGGTCTCCAGGA
TGGCGCAGATGACGCGAGTGGCTGCGCACATCGTGGCGTTCAGCATGTGC
ACATAGTCTACGGCGGCGTTCATCTTCTTAGTCTGGCCGAAACGGACGAG
CAGACGACGGGCCTGGTAGTCCAAGCAGTTAGAGCACGAGACAAGTTCCC
TGTAAGCGCCGCTGCCGCCGAACCAGGCCTCGAGATCCAGCTTCTTGGAG
GCAGCATGGTTGAGGGCACCGGAAACGATGTTAACAACGCGATATGGAAT
GCCCAGCGACTGGCAGAACTGCTCCGCATTCCCGATCATCTCGTCCATCA
TCTCCCACGACTTGTTGTCGTGTGGGGAGGTCAGTACGAACTGCTCCACC
TTCTCGAACTGGTGGACGCGGAAAATGCCGCGAGTGTCGCGTCCGTGCGA
GCCCACTTCCTGTCGGAAGCAGGTGGACAGACCAGCATACTTAATGGGCA
GCGAAGACTCCGGTAGCCATTCATCGCGATGGTAGGCGGCGATAGGCTGC
TCTGAGGTGGCGATCAGGTACTTCTCATCGATGCCCACCTCCTCCGCCTT
CTCGCTGCCCTTGCCCACCACCTTGTAGAGCTCCTCGTCGAACTGGGACA
GCTGGG
BO18149.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:02:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17259-PA | 1506 | CG17259-RA | 716..1503 | 806..19 | 3915 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:19:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17259-RB | 1771 | CG17259-RB | 829..1616 | 806..19 | 3925 | 99.9 | Minus |
| CG17259-RA | 1911 | CG17259-RA | 969..1756 | 806..19 | 3925 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:19:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3035648..3036435 | 19..806 | 3925 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-13 07:19:21 has no hits.
BO18149.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:19:05 Download gff for
BO18149.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17259-PA | 716..1506 | 15..806 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:34:47 Download gff for
BO18149.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17259-RA | 969..1764 | 7..806 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:32:27 Download gff for
BO18149.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17259-RA | 969..1764 | 7..806 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:32:27 Download gff for
BO18149.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3035640..3036435 | 7..806 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:34:47 Download gff for
BO18149.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3035640..3036435 | 7..806 | 99 | | Plus |
BO18149.5prime Sequence
751 bp (705 high quality bases) assembled on 2006-10-13
> BO18149.5prime
GAAGTTATCAGTCGACATGGTGCTGGATCTGGATCTGTTTCGCAGCGACA
AGGGGGGCAACCCGGACCTCGTGCGCGAAAATCAAAAGAAGCGCTTCAAG
GATGTGGCGCTGGTGGAGACTGTGATCGCCAAGGATACGGAGTGGCGTCA
GTGCCGCCACCGTGCCGACAACCTGAACAAGGTCAAGAACGTCTGCAGCA
AGGTGATCGGCGAGAAGATGAAGAAGAAGGAGCCGGTTGGTGCCATGAGC
GAGGACCTGCCCGCAGACGTGACCAAGGACCTCACAGAGATTGTAGCCGA
GACACTGCAGCCGTTGACCGTCAACCAGATCAAGCAGCTACGCGTTCTCA
TCGACGACGCAATGACCGAGAACCAGAAGTCGCTAGAGCTTGCCGAGCAG
ACGAGGAACACCTCACTGCGGGAGGTGGGCAACCACCTGCACGAGTCCGT
GCCTGTGTCTAACGACGAGGACGAGAACCGCGTGGAGCGCACCTTTGGCG
ACTGCGAAAAGCGCGGCAAGTACTCGCATGTGGACCTCATCGTGATGATC
GACGGCATGAACGCGGAGAAAGGAGCCGTGGTGTCCGGCGGACGTGGTTA
CTTTCTTACCGGAGCCGCAGTCTTTTTGGAGCAGGCTCTTATCCAGCACG
CTCTGCACCTGCTGTACGCCCGTGACTACGTTCCCCTGTACACGCCCTTC
TTCATGCGAAAGGAGGTAATGCAGGAGGTGGCCCAGCTGTCACAGTTCGA
C
BO18149.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:02:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17259-PA | 1506 | CG17259-RA | 1..735 | 17..751 | 3675 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:50:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17259-RB | 1771 | CG17259-RB | 114..848 | 17..751 | 3675 | 100 | Plus |
| CG17259-RA | 1911 | CG17259-RA | 254..988 | 17..751 | 3675 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:50:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3036416..3037150 | 751..17 | 3675 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 15:50:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Circe | 7450 | Circe CIRC 7450bp | 6454..6523 | 73..7 | 109 | 64.3 | Minus |
BO18149.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:19:06 Download gff for
BO18149.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17259-PA | 1..735 | 17..751 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 20:15:55 Download gff for
BO18149.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17259-RA | 254..988 | 17..751 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:43:08 Download gff for
BO18149.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17259-RA | 254..988 | 17..751 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:43:08 Download gff for
BO18149.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3036416..3037150 | 17..751 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 20:15:55 Download gff for
BO18149.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3036416..3037150 | 17..751 | 100 | | Minus |
BO18149.complete Sequence
1537 bp assembled on 2007-03-23
GenBank Submission: FJ634334
> BO18149.complete
GAAGTTATCAGTCGACATGGTGCTGGATCTGGATCTGTTTCGCAGCGACA
AGGGGGGCAACCCGGACCTCGTGCGCGAAAATCAAAAGAAGCGCTTCAAG
GATGTGGCGCTGGTGGAGACTGTGATCGCCAAGGATACGGAGTGGCGTCA
GTGCCGCCACCGTGCCGACAACCTGAACAAGGTCAAGAACGTCTGCAGCA
AGGTGATCGGCGAGAAGATGAAGAAGAAGGAGCCGGTTGGTGCCATGAGC
GAGGACCTGCCCGCAGACGTGACCAAGGACCTCACAGAGATTGTAGCCGA
GACACTGCAGCCGTTGACCGTCAACCAGATCAAGCAGCTACGCGTTCTCA
TCGACGACGCAATGACCGAGAACCAGAAGTCGCTAGAGCTTGCCGAGCAG
ACGAGGAACACCTCACTGCGGGAGGTGGGCAACCACCTGCACGAGTCCGT
GCCTGTGTCTAACGACGAGGACGAGAACCGCGTGGAGCGCACCTTTGGCG
ACTGCGAAAAGCGCGGCAAGTACTCGCATGTGGACCTCATCGTGATGATC
GACGGCATGAACGCGGAGAAAGGAGCCGTGGTGTCCGGCGGACGTGGTTA
CTTTCTTACCGGAGCCGCAGTCTTTTTGGAGCAGGCTCTTATCCAGCACG
CTCTGCACCTGCTGTACGCCCGTGACTACGTTCCCCTGTACACGCCCTTC
TTCATGCGAAAGGAGGTAATGCAGGAGGTGGCCCAGCTGTCACAGTTCGA
CGAGGAGCTCTACAAGGTGGTGGGCAAGGGCAGCGAGAAGGCGGAGGAGG
TGGGCATCGATGAGAAGTACCTGATCGCCACCTCAGAGCAGCCTATCGCC
GCCTACCATCGCGATGAATGGCTACCGGAGTCTTCGCTGCCCATTAAGTA
TGCTGGTCTGTCCACCTGCTTCCGACAGGAAGTGGGCTCGCACGGACGCG
ACACTCGCGGCATTTTCCGCGTCCACCAGTTCGAGAAGGTGGAGCAGTTC
GTACTGACCTCCCCACACGACAACAAGTCGTGGGAGATGATGGACGAGAT
GATCGGGAATGCGGAGCAGTTCTGCCAGTCGCTGGGCATTCCATATCGCG
TTGTTAACATCGTTTCCGGTGCCCTCAACCATGCTGCCTCCAAGAAGCTG
GATCTCGAGGCCTGGTTCGGCGGCAGCGGCGCTTACAGGGAACTTGTCTC
GTGCTCTAACTGCTTGGACTACCAGGCCCGTCGTCTGCTCGTCCGTTTCG
GCCAGACTAAGAAGATGAACGCCGCCGTAGACTATGTGCACATGCTGAAC
GCCACGATGTGCGCAGCCACTCGCGTCATCTGCGCCATCCTGGAGACCCA
TCAGACAGAGACGGGCATCAAGGTGCCGGAGCCATTGAAGAAGTACATGC
CGGCGAAGTTCCAGGATGAGATTCCGTTCGTCAAGCCCGCTCCCATTGAT
CTGGAGTTGGCCGCCGCCGAGAAGCAGAAAGGCAAAAAGGAGAAAACCAA
GAAGGACCCTGCCGCCGGTGCAAGCTTTCTAGACCAT
BO18149.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:28:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17259-RB | 1506 | CG17259-PB | 1..1503 | 17..1519 | 7515 | 100 | Plus |
| CG17259-RA | 1506 | CG17259-PA | 1..1503 | 17..1519 | 7515 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:28:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17259-RB | 1771 | CG17259-RB | 114..1616 | 17..1519 | 7515 | 100 | Plus |
| CG17259-RA | 1911 | CG17259-RA | 254..1756 | 17..1519 | 7515 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:27:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3035648..3037150 | 1519..17 | 7515 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:28:01 has no hits.
BO18149.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:56:45 Download gff for
BO18149.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17259-RA | 1..1506 | 17..1523 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:29:16 Download gff for
BO18149.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17259-RA | 254..1764 | 17..1531 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:52:44 Download gff for
BO18149.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17259-RA | 254..1756 | 17..1521 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:56:45 Download gff for
BO18149.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17259-RA | 254..1764 | 17..1531 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:20:56 Download gff for
BO18149.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17259-RA | 254..1756 | 17..1521 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:20:56 Download gff for
BO18149.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3035646..3037150 | 17..1521 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:52:44 Download gff for
BO18149.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3035646..3037150 | 17..1521 | 99 | | Minus |
BO18149.pep Sequence
Translation from 16 to 1537
> BO18149.pep
MVLDLDLFRSDKGGNPDLVRENQKKRFKDVALVETVIAKDTEWRQCRHRA
DNLNKVKNVCSKVIGEKMKKKEPVGAMSEDLPADVTKDLTEIVAETLQPL
TVNQIKQLRVLIDDAMTENQKSLELAEQTRNTSLREVGNHLHESVPVSND
EDENRVERTFGDCEKRGKYSHVDLIVMIDGMNAEKGAVVSGGRGYFLTGA
AVFLEQALIQHALHLLYARDYVPLYTPFFMRKEVMQEVAQLSQFDEELYK
VVGKGSEKAEEVGIDEKYLIATSEQPIAAYHRDEWLPESSLPIKYAGLST
CFRQEVGSHGRDTRGIFRVHQFEKVEQFVLTSPHDNKSWEMMDEMIGNAE
QFCQSLGIPYRVVNIVSGALNHAASKKLDLEAWFGGSGAYRELVSCSNCL
DYQARRLLVRFGQTKKMNAAVDYVHMLNATMCAATRVICAILETHQTETG
IKVPEPLKKYMPAKFQDEIPFVKPAPIDLELAAAEKQKGKKEKTKKDPAA
GASFLDH
BO18149.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:21:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17259-PB | 501 | CG17259-PB | 1..501 | 1..501 | 2594 | 100 | Plus |
| CG17259-PA | 501 | CG17259-PA | 1..501 | 1..501 | 2594 | 100 | Plus |
| Aats-ser-PB | 417 | CG4938-PB | 16..394 | 53..461 | 372 | 26.8 | Plus |
| Aats-ser-PA | 417 | CG4938-PA | 16..394 | 53..461 | 372 | 26.8 | Plus |
