Clone BO18165 Report

Search the DGRC for BO18165

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:181
Well:65
Vector:pDNR-Dual
Associated Gene/TranscriptSyb-RA
Protein status:BO18165.pep: validated full length
Sequenced Size:421

Clone Sequence Records

BO18165.3prime Sequence

419 bp (419 high quality bases) assembled on 2006-10-13

> BO18165.3prime
ATGGTCTAGAAAGCTTGCGTGCGGCGGTGCTTGGGTGATGGCCTTGTTTC
CTCCACCACTGCCGCTGTCACTACTAGACGGCCAAACGGACACCAGAACG
ATGATGAGCAGCACAACGGCTATCACGCCCAGGATGATCATCATCTTCAT
GTTGGCCCACCATTGCTTGCGCTTCAGCTTGCCGGCCTGCTGCTCGAACT
GGGATGCTCCCTGCTCCAGCTGATCCGCACGCTCGCCCAGTTCCGATAGC
TTCTGGTCCCGCTCCAGGACCTTCTCCACGTTCACACGCATAATCCCGAC
CACCTCGTCCACCTTGGCTTGGGTCTGCTGCAGCTTCTTCTGGGCTGCAT
TGTTGTTCTCGTTGTTGTTGGATCCCGAGGGGGAGGGGGCTTCGTTGTTC
TCCATGTCGACTGATAACT

BO18165.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG12210-PA 390 Syb-RA 1..387 405..19 1910 99.7 Minus
CG12210-PB 399 Syb-RB 117..386 358..89 1325 99.6 Minus
CG12210-PB 399 Syb-RB 1..47 405..359 235 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:15:57
Subject Length Description Subject Range Query Range Score Percent Strand
Syb-RE 814 CG12210-RE 109..495 405..19 1920 99.7 Minus
Syb-RA 852 CG12210-RA 147..533 405..19 1920 99.7 Minus
Syb-RC 921 CG12210-RC 263..602 358..19 1685 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:15:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10250879..10251144 93..358 1315 99.6 Plus
2R 25286936 2R 10249754..10249828 19..93 375 100 Plus
3L 28110227 3L 1635328..1635439 172..283 245 81.2 Plus
2R 25286936 2R 10251927..10251974 358..405 240 100 Plus
Blast to na_te.dros performed on 2015-02-06 10:15:54 has no hits.

BO18165.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:19:19 Download gff for BO18165.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12210-PA 1..390 15..405 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:39:41 Download gff for BO18165.3prime
Subject Subject Range Query Range Percent Splice Strand
Syb-RA 142..538 14..410 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:25:02 Download gff for BO18165.3prime
Subject Subject Range Query Range Percent Splice Strand
Syb-RA 142..538 14..410 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:25:02 Download gff for BO18165.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 10249749..10249827 14..92 97 <- Plus
2R 10250879..10251144 93..358 99 <- Plus
2R 10251928..10251979 359..410 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:39:41 Download gff for BO18165.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6137254..6137332 14..92 97 <- Plus
arm_2R 6138384..6138649 93..358 99 <- Plus
arm_2R 6139433..6139484 359..410 96   Plus

BO18165.5prime Sequence

419 bp (419 high quality bases) assembled on 2006-10-13

> BO18165.5prime
GAAGTTATCAGTCGACATGGAGAACAACGAAGCCCCCTCCCCCTCGGGAT
CCAACAACAACGAGAACAACAATGCAGCCCAGAAGAAGCTGCAGCAGACC
CAAGCCAAGGTGGACGAGGTGGTCGGGATTATGCGTGTGAACGTGGAGAA
GGTCCTGGAGCGGGACCAGAAGCTATCGGAACTGGGCGAGCGTGCGGATC
AGCTGGAGCAGGGAGCATCCCAGTTCGAGCAGCAGGCCGGCAAGCTGAAG
CGCAAGCAATGGTGGGCCAACATGAAGATGATGATCATCCTGGGCGTGAT
AGCCGTTGTGCTGCTCATCATCGTTCTGGTGTCCGTTTGGCCGTCTAGTA
GTGACAGCGGCAGTGGTGGAGGAAACAAGGCCATCACCCAAGCACCGCCG
CACGCAAGCTTTCTAGACC

BO18165.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG12210-PA 390 Syb-RA 1..387 17..403 1910 99.7 Plus
CG12210-PB 399 Syb-RB 117..386 64..333 1325 99.6 Plus
CG12210-PB 399 Syb-RB 1..47 17..63 235 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:16:09
Subject Length Description Subject Range Query Range Score Percent Strand
Syb-RE 814 CG12210-RE 109..495 17..403 1920 99.7 Plus
Syb-RA 852 CG12210-RA 147..533 17..403 1920 99.7 Plus
Syb-RC 921 CG12210-RC 263..602 64..403 1685 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:16:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10250879..10251144 329..64 1315 99.6 Minus
2R 25286936 2R 10249754..10249828 403..329 375 100 Minus
3L 28110227 3L 1635328..1635439 250..139 245 81.2 Minus
2R 25286936 2R 10251927..10251974 64..17 240 100 Minus
Blast to na_te.dros performed on 2015-02-06 10:16:06 has no hits.

BO18165.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:19:19 Download gff for BO18165.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12210-PA 1..390 17..407 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:39:43 Download gff for BO18165.5prime
Subject Subject Range Query Range Percent Splice Strand
Syb-RA 142..538 12..408 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:25:03 Download gff for BO18165.5prime
Subject Subject Range Query Range Percent Splice Strand
Syb-RA 142..538 12..408 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:25:03 Download gff for BO18165.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10249749..10249827 330..408 97 <- Minus
2R 10250879..10251144 64..329 99 <- Minus
2R 10251928..10251979 12..63 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:39:43 Download gff for BO18165.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6137254..6137332 330..408 97 <- Minus
arm_2R 6138384..6138649 64..329 99 <- Minus
arm_2R 6139433..6139484 12..63 96   Minus

BO18165.complete Sequence

421 bp assembled on 2006-10-11

GenBank Submission: FJ634336

> BO18165.complete
GAAGTTATCAGTCGACATGGAGAACAACGAAGCCCCCTCCCCCTCGGGAT
CCAACAACAACGAGAACAACAATGCAGCCCAGAAGAAGCTGCAGCAGACC
CAAGCCAAGGTGGACGAGGTGGTCGGGATTATGCGTGTGAACGTGGAGAA
GGTCCTGGAGCGGGACCAGAAGCTATCGGAACTGGGCGAGCGTGCGGATC
AGCTGGAGCAGGGAGCATCCCAGTTCGAGCAGCAGGCCGGCAAGCTGAAG
CGCAAGCAATGGTGGGCCAACATGAAGATGATGATCATCCTGGGCGTGAT
AGCCGTTGTGCTGCTCATCATCGTTCTGGTGTCCGTTTGGCCGTCTAGTA
GTGACAGCGGCAGTGGTGGAGGAAACAAGGCCATCACCCAAGCACCGCCG
CACGCAAGCTTTCTAGACCAT

BO18165.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:41:55
Subject Length Description Subject Range Query Range Score Percent Strand
Syb-RE 390 CG12210-PE 1..387 17..403 1920 99.7 Plus
Syb-RA 390 CG12210-PA 1..387 17..403 1920 99.7 Plus
Syb-RC 459 CG12210-PC 117..456 64..403 1685 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:41:57
Subject Length Description Subject Range Query Range Score Percent Strand
Syb-RE 814 CG12210-RE 109..495 17..403 1920 99.7 Plus
Syb-RA 852 CG12210-RA 147..533 17..403 1920 99.7 Plus
Syb-RC 921 CG12210-RC 263..602 64..403 1685 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:41:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10250879..10251144 329..64 1315 99.6 Minus
2R 25286936 2R 10249754..10249828 403..329 375 100 Minus
3L 28110227 3L 1635328..1635439 250..139 245 81.2 Minus
2R 25286936 2R 10251927..10251974 64..17 240 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:41:54 has no hits.

BO18165.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:38 Download gff for BO18165.complete
Subject Subject Range Query Range Percent Splice Strand
Syb-RA 1..390 17..407 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:40:56 Download gff for BO18165.complete
Subject Subject Range Query Range Percent Splice Strand
Syb-RA 134..530 12..408 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:32:08 Download gff for BO18165.complete
Subject Subject Range Query Range Percent Splice Strand
Syb-RA 147..533 17..405 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:38 Download gff for BO18165.complete
Subject Subject Range Query Range Percent Splice Strand
Syb-RA 134..530 12..408 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:24:32 Download gff for BO18165.complete
Subject Subject Range Query Range Percent Splice Strand
Syb-RA 147..533 17..405 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:24:32 Download gff for BO18165.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10250879..10251144 64..329 99 <- Minus
2R 10251928..10251974 17..63 100   Minus
2R 10249752..10249827 330..405 97 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:32:08 Download gff for BO18165.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 6137257..6137332 330..405 97 <- Minus
arm_2R 6138384..6138649 64..329 99 <- Minus
arm_2R 6139433..6139479 17..63 100   Minus

BO18165.pep Sequence

Translation from 16 to 421

> BO18165.pep
MENNEAPSPSGSNNNENNNAAQKKLQQTQAKVDEVVGIMRVNVEKVLERD
QKLSELGERADQLEQGASQFEQQAGKLKRKQWWANMKMMIILGVIAVVLL
IIVLVSVWPSSSDSGSGGGNKAITQAPPHASFLDH

BO18165.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:07:11
Subject Length Description Subject Range Query Range Score Percent Strand
Syb-PE 129 CG12210-PE 1..129 1..129 651 100 Plus
Syb-PA 129 CG12210-PA 1..129 1..129 651 100 Plus
Syb-PC 152 CG12210-PC 1..152 1..129 614 84.2 Plus
Syb-PD 109 CG12210-PD 1..108 1..108 526 98.1 Plus
Syb-PB 132 CG12210-PB 1..131 1..108 489 80.2 Plus