Clone Sequence Records
BO18165.3prime Sequence
419 bp (419 high quality bases) assembled on 2006-10-13
> BO18165.3prime
ATGGTCTAGAAAGCTTGCGTGCGGCGGTGCTTGGGTGATGGCCTTGTTTC
CTCCACCACTGCCGCTGTCACTACTAGACGGCCAAACGGACACCAGAACG
ATGATGAGCAGCACAACGGCTATCACGCCCAGGATGATCATCATCTTCAT
GTTGGCCCACCATTGCTTGCGCTTCAGCTTGCCGGCCTGCTGCTCGAACT
GGGATGCTCCCTGCTCCAGCTGATCCGCACGCTCGCCCAGTTCCGATAGC
TTCTGGTCCCGCTCCAGGACCTTCTCCACGTTCACACGCATAATCCCGAC
CACCTCGTCCACCTTGGCTTGGGTCTGCTGCAGCTTCTTCTGGGCTGCAT
TGTTGTTCTCGTTGTTGTTGGATCCCGAGGGGGAGGGGGCTTCGTTGTTC
TCCATGTCGACTGATAACT
BO18165.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12210-PA | 390 | Syb-RA | 1..387 | 405..19 | 1910 | 99.7 | Minus |
CG12210-PB | 399 | Syb-RB | 117..386 | 358..89 | 1325 | 99.6 | Minus |
CG12210-PB | 399 | Syb-RB | 1..47 | 405..359 | 235 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:15:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syb-RE | 814 | CG12210-RE | 109..495 | 405..19 | 1920 | 99.7 | Minus |
Syb-RA | 852 | CG12210-RA | 147..533 | 405..19 | 1920 | 99.7 | Minus |
Syb-RC | 921 | CG12210-RC | 263..602 | 358..19 | 1685 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:15:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10250879..10251144 | 93..358 | 1315 | 99.6 | Plus |
2R | 25286936 | 2R | 10249754..10249828 | 19..93 | 375 | 100 | Plus |
3L | 28110227 | 3L | 1635328..1635439 | 172..283 | 245 | 81.2 | Plus |
2R | 25286936 | 2R | 10251927..10251974 | 358..405 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 10:15:54 has no hits.
BO18165.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:19:19 Download gff for
BO18165.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12210-PA | 1..390 | 15..405 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:39:41 Download gff for
BO18165.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syb-RA | 142..538 | 14..410 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:25:02 Download gff for
BO18165.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syb-RA | 142..538 | 14..410 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:25:02 Download gff for
BO18165.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10249749..10249827 | 14..92 | 97 | <- | Plus |
2R | 10250879..10251144 | 93..358 | 99 | <- | Plus |
2R | 10251928..10251979 | 359..410 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:39:41 Download gff for
BO18165.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6137254..6137332 | 14..92 | 97 | <- | Plus |
arm_2R | 6138384..6138649 | 93..358 | 99 | <- | Plus |
arm_2R | 6139433..6139484 | 359..410 | 96 | | Plus |
BO18165.5prime Sequence
419 bp (419 high quality bases) assembled on 2006-10-13
> BO18165.5prime
GAAGTTATCAGTCGACATGGAGAACAACGAAGCCCCCTCCCCCTCGGGAT
CCAACAACAACGAGAACAACAATGCAGCCCAGAAGAAGCTGCAGCAGACC
CAAGCCAAGGTGGACGAGGTGGTCGGGATTATGCGTGTGAACGTGGAGAA
GGTCCTGGAGCGGGACCAGAAGCTATCGGAACTGGGCGAGCGTGCGGATC
AGCTGGAGCAGGGAGCATCCCAGTTCGAGCAGCAGGCCGGCAAGCTGAAG
CGCAAGCAATGGTGGGCCAACATGAAGATGATGATCATCCTGGGCGTGAT
AGCCGTTGTGCTGCTCATCATCGTTCTGGTGTCCGTTTGGCCGTCTAGTA
GTGACAGCGGCAGTGGTGGAGGAAACAAGGCCATCACCCAAGCACCGCCG
CACGCAAGCTTTCTAGACC
BO18165.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12210-PA | 390 | Syb-RA | 1..387 | 17..403 | 1910 | 99.7 | Plus |
CG12210-PB | 399 | Syb-RB | 117..386 | 64..333 | 1325 | 99.6 | Plus |
CG12210-PB | 399 | Syb-RB | 1..47 | 17..63 | 235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 10:16:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syb-RE | 814 | CG12210-RE | 109..495 | 17..403 | 1920 | 99.7 | Plus |
Syb-RA | 852 | CG12210-RA | 147..533 | 17..403 | 1920 | 99.7 | Plus |
Syb-RC | 921 | CG12210-RC | 263..602 | 64..403 | 1685 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 10:16:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10250879..10251144 | 329..64 | 1315 | 99.6 | Minus |
2R | 25286936 | 2R | 10249754..10249828 | 403..329 | 375 | 100 | Minus |
3L | 28110227 | 3L | 1635328..1635439 | 250..139 | 245 | 81.2 | Minus |
2R | 25286936 | 2R | 10251927..10251974 | 64..17 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 10:16:06 has no hits.
BO18165.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:19:19 Download gff for
BO18165.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12210-PA | 1..390 | 17..407 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:39:43 Download gff for
BO18165.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syb-RA | 142..538 | 12..408 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:25:03 Download gff for
BO18165.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syb-RA | 142..538 | 12..408 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:25:03 Download gff for
BO18165.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10249749..10249827 | 330..408 | 97 | <- | Minus |
2R | 10250879..10251144 | 64..329 | 99 | <- | Minus |
2R | 10251928..10251979 | 12..63 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:39:43 Download gff for
BO18165.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6137254..6137332 | 330..408 | 97 | <- | Minus |
arm_2R | 6138384..6138649 | 64..329 | 99 | <- | Minus |
arm_2R | 6139433..6139484 | 12..63 | 96 | | Minus |
BO18165.complete Sequence
421 bp assembled on 2006-10-11
GenBank Submission: FJ634336
> BO18165.complete
GAAGTTATCAGTCGACATGGAGAACAACGAAGCCCCCTCCCCCTCGGGAT
CCAACAACAACGAGAACAACAATGCAGCCCAGAAGAAGCTGCAGCAGACC
CAAGCCAAGGTGGACGAGGTGGTCGGGATTATGCGTGTGAACGTGGAGAA
GGTCCTGGAGCGGGACCAGAAGCTATCGGAACTGGGCGAGCGTGCGGATC
AGCTGGAGCAGGGAGCATCCCAGTTCGAGCAGCAGGCCGGCAAGCTGAAG
CGCAAGCAATGGTGGGCCAACATGAAGATGATGATCATCCTGGGCGTGAT
AGCCGTTGTGCTGCTCATCATCGTTCTGGTGTCCGTTTGGCCGTCTAGTA
GTGACAGCGGCAGTGGTGGAGGAAACAAGGCCATCACCCAAGCACCGCCG
CACGCAAGCTTTCTAGACCAT
BO18165.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:41:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syb-RE | 390 | CG12210-PE | 1..387 | 17..403 | 1920 | 99.7 | Plus |
Syb-RA | 390 | CG12210-PA | 1..387 | 17..403 | 1920 | 99.7 | Plus |
Syb-RC | 459 | CG12210-PC | 117..456 | 64..403 | 1685 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:41:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syb-RE | 814 | CG12210-RE | 109..495 | 17..403 | 1920 | 99.7 | Plus |
Syb-RA | 852 | CG12210-RA | 147..533 | 17..403 | 1920 | 99.7 | Plus |
Syb-RC | 921 | CG12210-RC | 263..602 | 64..403 | 1685 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:41:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10250879..10251144 | 329..64 | 1315 | 99.6 | Minus |
2R | 25286936 | 2R | 10249754..10249828 | 403..329 | 375 | 100 | Minus |
3L | 28110227 | 3L | 1635328..1635439 | 250..139 | 245 | 81.2 | Minus |
2R | 25286936 | 2R | 10251927..10251974 | 64..17 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:41:54 has no hits.
BO18165.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:38 Download gff for
BO18165.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syb-RA | 1..390 | 17..407 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:40:56 Download gff for
BO18165.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syb-RA | 134..530 | 12..408 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:32:08 Download gff for
BO18165.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syb-RA | 147..533 | 17..405 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:38 Download gff for
BO18165.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syb-RA | 134..530 | 12..408 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:24:32 Download gff for
BO18165.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Syb-RA | 147..533 | 17..405 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:24:32 Download gff for
BO18165.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10250879..10251144 | 64..329 | 99 | <- | Minus |
2R | 10251928..10251974 | 17..63 | 100 | | Minus |
2R | 10249752..10249827 | 330..405 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:32:08 Download gff for
BO18165.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 6137257..6137332 | 330..405 | 97 | <- | Minus |
arm_2R | 6138384..6138649 | 64..329 | 99 | <- | Minus |
arm_2R | 6139433..6139479 | 17..63 | 100 | | Minus |
BO18165.pep Sequence
Translation from 16 to 421
> BO18165.pep
MENNEAPSPSGSNNNENNNAAQKKLQQTQAKVDEVVGIMRVNVEKVLERD
QKLSELGERADQLEQGASQFEQQAGKLKRKQWWANMKMMIILGVIAVVLL
IIVLVSVWPSSSDSGSGGGNKAITQAPPHASFLDH
BO18165.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:07:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Syb-PE | 129 | CG12210-PE | 1..129 | 1..129 | 651 | 100 | Plus |
Syb-PA | 129 | CG12210-PA | 1..129 | 1..129 | 651 | 100 | Plus |
Syb-PC | 152 | CG12210-PC | 1..152 | 1..129 | 614 | 84.2 | Plus |
Syb-PD | 109 | CG12210-PD | 1..108 | 1..108 | 526 | 98.1 | Plus |
Syb-PB | 132 | CG12210-PB | 1..131 | 1..108 | 489 | 80.2 | Plus |