Clone BO18168 Report

Search the DGRC for BO18168

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:181
Well:68
Vector:pDNR-Dual
Associated Gene/TranscriptSp7-RD
Protein status:BO18168.pep: validated full length
Sequenced Size:541

Clone Sequence Records

BO18168.3prime Sequence

539 bp (539 high quality bases) assembled on 2006-10-13

> BO18168.3prime
ATGGTCTAGAAAGCTTGCAACTGCCACCGCAACTGAGTTCCCGCCGTCCC
TATCCACGTACTCAAGCAGTGCCATCCAGTTGAACTCGTCAATAGCAGTG
TCGTTGCCATTATAGACCTTATTGCTGAAGGAGTGGGGCCCGCACTTGGG
TGGCGAGGGCAGCAGGTTGCCCAGACCCGCTTGACCGTCTTGACCTCGTG
AACTTGAACTGGTAGTCGTTGGAGGAGGGGCTGCGGAGGTGGCCTCCTGG
GATCCAAAGCTGCGATCACTTGTACAGCAAACATATGGCTGGCGACCTAC
TCCATCGAGGCACTGTGAGTTTCGAAGAAAGGTTCTGTCCTCCGGGCTGA
CATAAGACTGCTGAATCACGGAAAGCAGACTTTGACAGTCGTATATGGAC
AAACATTGTCCCTGTTTCTGGTTGGGATTCCTACAACTTCCTTGTGCCGC
AACATTTTGTAGAACGGTGAAAGGCAGCAGGCAGGTGGCCAAAAAAATCC
CAACTACTTTGCGTGTTGATTTCATGTCGACTGATAACT

BO18168.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG3066-PD 510 CG3066-RD 1..507 525..19 2535 100 Minus
CG3066-PA 1176 CG3066-RA 1..475 525..51 2375 100 Minus
CG3066-PC 1176 CG3066-RC 1..475 525..51 2375 100 Minus
CG3066-PA 1176 CG3066-RA 480..511 50..19 160 100 Minus
CG3066-PC 1176 CG3066-RC 480..511 50..19 160 100 Minus
CG3066-PB 726 CG3066-RB 30..61 50..19 160 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:38:03
Subject Length Description Subject Range Query Range Score Percent Strand
Sp7-RF 1565 CG3066-RF 156..666 525..19 2485 99.2 Minus
Sp7-RE 1418 CG3066-RE 156..666 525..19 2485 99.2 Minus
Sp7-RA 1851 CG3066-RA 589..1099 525..19 2485 99.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:37:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7762007..7762394 437..50 1940 100 Minus
3R 32079331 3R 7761187..7761276 525..436 450 100 Minus
Blast to na_te.dros performed on 2015-02-10 16:37:59 has no hits.

BO18168.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:19:21 Download gff for BO18168.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3066-PD 1..510 16..525 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:18:24 Download gff for BO18168.3prime
Subject Subject Range Query Range Percent Splice Strand
Sp7-RA 583..1099 19..533 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:03:34 Download gff for BO18168.3prime
Subject Subject Range Query Range Percent Splice Strand
Sp7-RA 583..1099 19..533 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:03:34 Download gff for BO18168.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 7761181..7761274 438..533 95 -> Minus
3R 7762007..7762393 51..437 100 -> Minus
3R 7762461..7762492 19..50 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:18:24 Download gff for BO18168.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3586903..3586996 438..533 95 -> Minus
arm_3R 3587729..3588115 51..437 100 -> Minus
arm_3R 3588183..3588214 19..50 100   Minus

BO18168.5prime Sequence

539 bp (539 high quality bases) assembled on 2006-10-13

> BO18168.5prime
GAAGTTATCAGTCGACATGAAATCAACACGCAAAGTAGTTGGGATTTTTT
TGGCCACCTGCCTGCTGCCTTTCACCGTTCTACAAAATGTTGCGGCACAA
GGAAGTTGTAGGAATCCCAACCAGAAACAGGGACAATGTTTGTCCATATA
CGACTGTCAAAGTCTGCTTTCCGTGATTCAGCAGTCTTATGTCAGCCCGG
AGGACAGAACCTTTCTTCGAAACTCACAGTGCCTCGATGGAGTAGGTCGC
CAGCCATATGTTTGCTGTACAAGTGATCGCAGCTTTGGATCCCAGGAGGC
CACCTCCGCAGCCCCTCCTCCAACGACTACCAGTTCAAGTTCACGAGGTC
AAGACGGTCAAGCGGGTCTGGGCAACCTGCTGCCCTCGCCACCCAAGTGC
GGGCCCCACTCCTTCAGCAATAAGGTCTATAATGGCAACGACACTGCTAT
TGACGAGTTCAACTGGATGGCACTGCTTGAGTACGTGGATAGGGACGGCG
GGAACTCAGTTGCGGTGGCAGTTGCAAGCTTTCTAGACC

BO18168.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG3066-PD 510 CG3066-RD 1..507 17..523 2535 100 Plus
CG3066-PA 1176 CG3066-RA 1..475 17..491 2375 100 Plus
CG3066-PC 1176 CG3066-RC 1..475 17..491 2375 100 Plus
CG3066-PA 1176 CG3066-RA 480..511 492..523 160 100 Plus
CG3066-PC 1176 CG3066-RC 480..511 492..523 160 100 Plus
CG3066-PB 726 CG3066-RB 30..61 492..523 160 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:05:40
Subject Length Description Subject Range Query Range Score Percent Strand
Sp7-RF 1565 CG3066-RF 156..666 17..523 2485 99.2 Plus
Sp7-RE 1418 CG3066-RE 156..666 17..523 2485 99.2 Plus
Sp7-RA 1851 CG3066-RA 589..1099 17..523 2485 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:05:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7762007..7762394 105..492 1940 100 Plus
3R 32079331 3R 7761187..7761276 17..106 450 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:05:38 has no hits.

BO18168.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:19:22 Download gff for BO18168.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3066-PD 1..510 17..526 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:44:03 Download gff for BO18168.5prime
Subject Subject Range Query Range Percent Splice Strand
Sp7-RA 583..1099 9..523 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:20:36 Download gff for BO18168.5prime
Subject Subject Range Query Range Percent Splice Strand
Sp7-RA 583..1099 9..523 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:20:36 Download gff for BO18168.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 7761181..7761274 9..104 95 -> Plus
3R 7762007..7762393 105..491 100 -> Plus
3R 7762461..7762492 492..523 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:44:03 Download gff for BO18168.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3586903..3586996 9..104 95 -> Plus
arm_3R 3587729..3588115 105..491 100 -> Plus
arm_3R 3588183..3588214 492..523 100   Plus

BO18168.complete Sequence

541 bp assembled on 2006-10-11

GenBank Submission: FJ634337

> BO18168.complete
GAAGTTATCAGTCGACATGAAATCAACACGCAAAGTAGTTGGGATTTTTT
TGGCCACCTGCCTGCTGCCTTTCACCGTTCTACAAAATGTTGCGGCACAA
GGAAGTTGTAGGAATCCCAACCAGAAACAGGGACAATGTTTGTCCATATA
CGACTGTCAAAGTCTGCTTTCCGTGATTCAGCAGTCTTATGTCAGCCCGG
AGGACAGAACCTTTCTTCGAAACTCACAGTGCCTCGATGGAGTAGGTCGC
CAGCCATATGTTTGCTGTACAAGTGATCGCAGCTTTGGATCCCAGGAGGC
CACCTCCGCAGCCCCTCCTCCAACGACTACCAGTTCAAGTTCACGAGGTC
AAGACGGTCAAGCGGGTCTGGGCAACCTGCTGCCCTCGCCACCCAAGTGC
GGGCCCCACTCCTTCAGCAATAAGGTCTATAATGGCAACGACACTGCTAT
TGACGAGTTCAACTGGATGGCACTGCTTGAGTACGTGGATAGGGACGGCG
GGAACTCAGTTGCGGTGGCAGTTGCAAGCTTTCTAGACCAT

BO18168.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:53:27
Subject Length Description Subject Range Query Range Score Percent Strand
Sp7-RF 1176 CG3066-PF 1..511 17..523 2460 99.2 Plus
Sp7-RE 1176 CG3066-PE 1..511 17..523 2460 99.2 Plus
Sp7-RA 1176 CG3066-PA 1..511 17..523 2460 99.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:53:28
Subject Length Description Subject Range Query Range Score Percent Strand
Sp7-RF 1565 CG3066-RF 156..666 17..523 2460 99.2 Plus
Sp7-RE 1418 CG3066-RE 156..666 17..523 2460 99.2 Plus
Sp7-RA 1851 CG3066-RA 589..1099 17..523 2460 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:53:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7762007..7762394 105..492 1940 100 Plus
3R 32079331 3R 7761187..7761276 17..106 450 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:53:26 has no hits.

BO18168.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:39 Download gff for BO18168.complete
Subject Subject Range Query Range Percent Splice Strand
Sp7-RD 1..510 17..526 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:40:57 Download gff for BO18168.complete
Subject Subject Range Query Range Percent Splice Strand
Sp7-RD 561..1073 9..523 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:34:24 Download gff for BO18168.complete
Subject Subject Range Query Range Percent Splice Strand
Sp7-RA 589..1099 17..525 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:41 Download gff for BO18168.complete
Subject Subject Range Query Range Percent Splice Strand
Sp7-RD 561..1073 9..523 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:54:59 Download gff for BO18168.complete
Subject Subject Range Query Range Percent Splice Strand
Sp7-RA 589..1099 17..525 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:54:59 Download gff for BO18168.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7761187..7761274 17..104 100 -> Plus
3R 7762007..7762393 105..491 100 -> Plus
3R 7762461..7762492 492..525 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:34:24 Download gff for BO18168.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3586909..3586996 17..104 100 -> Plus
arm_3R 3587729..3588115 105..491 100 -> Plus
arm_3R 3588183..3588214 492..525 94   Plus

BO18168.pep Sequence

Translation from 16 to 541

> BO18168.pep
MKSTRKVVGIFLATCLLPFTVLQNVAAQGSCRNPNQKQGQCLSIYDCQSL
LSVIQQSYVSPEDRTFLRNSQCLDGVGRQPYVCCTSDRSFGSQEATSAAP
PPTTTSSSSRGQDGQAGLGNLLPSPPKCGPHSFSNKVYNGNDTAIDEFNW
MALLEYVDRDGGNSVAVAVASFLDH

BO18168.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:07:08
Subject Length Description Subject Range Query Range Score Percent Strand
Sp7-PF 391 CG3066-PF 1..161 1..161 846 98.8 Plus
Sp7-PE 391 CG3066-PE 1..161 1..161 846 98.8 Plus
Sp7-PA 391 CG3066-PA 1..161 1..161 846 98.8 Plus
CG9733-PB 417 CG9733-PB 3..196 10..173 264 32.8 Plus
CG9733-PA 418 CG9733-PA 25..197 31..173 259 34.4 Plus