Clone Sequence Records
BO18168.3prime Sequence
539 bp (539 high quality bases) assembled on 2006-10-13
> BO18168.3prime
ATGGTCTAGAAAGCTTGCAACTGCCACCGCAACTGAGTTCCCGCCGTCCC
TATCCACGTACTCAAGCAGTGCCATCCAGTTGAACTCGTCAATAGCAGTG
TCGTTGCCATTATAGACCTTATTGCTGAAGGAGTGGGGCCCGCACTTGGG
TGGCGAGGGCAGCAGGTTGCCCAGACCCGCTTGACCGTCTTGACCTCGTG
AACTTGAACTGGTAGTCGTTGGAGGAGGGGCTGCGGAGGTGGCCTCCTGG
GATCCAAAGCTGCGATCACTTGTACAGCAAACATATGGCTGGCGACCTAC
TCCATCGAGGCACTGTGAGTTTCGAAGAAAGGTTCTGTCCTCCGGGCTGA
CATAAGACTGCTGAATCACGGAAAGCAGACTTTGACAGTCGTATATGGAC
AAACATTGTCCCTGTTTCTGGTTGGGATTCCTACAACTTCCTTGTGCCGC
AACATTTTGTAGAACGGTGAAAGGCAGCAGGCAGGTGGCCAAAAAAATCC
CAACTACTTTGCGTGTTGATTTCATGTCGACTGATAACT
BO18168.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3066-PD | 510 | CG3066-RD | 1..507 | 525..19 | 2535 | 100 | Minus |
CG3066-PA | 1176 | CG3066-RA | 1..475 | 525..51 | 2375 | 100 | Minus |
CG3066-PC | 1176 | CG3066-RC | 1..475 | 525..51 | 2375 | 100 | Minus |
CG3066-PA | 1176 | CG3066-RA | 480..511 | 50..19 | 160 | 100 | Minus |
CG3066-PC | 1176 | CG3066-RC | 480..511 | 50..19 | 160 | 100 | Minus |
CG3066-PB | 726 | CG3066-RB | 30..61 | 50..19 | 160 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:38:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sp7-RF | 1565 | CG3066-RF | 156..666 | 525..19 | 2485 | 99.2 | Minus |
Sp7-RE | 1418 | CG3066-RE | 156..666 | 525..19 | 2485 | 99.2 | Minus |
Sp7-RA | 1851 | CG3066-RA | 589..1099 | 525..19 | 2485 | 99.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:37:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7762007..7762394 | 437..50 | 1940 | 100 | Minus |
3R | 32079331 | 3R | 7761187..7761276 | 525..436 | 450 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:37:59 has no hits.
BO18168.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:19:21 Download gff for
BO18168.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3066-PD | 1..510 | 16..525 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:18:24 Download gff for
BO18168.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sp7-RA | 583..1099 | 19..533 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:03:34 Download gff for
BO18168.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sp7-RA | 583..1099 | 19..533 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:03:34 Download gff for
BO18168.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7761181..7761274 | 438..533 | 95 | -> | Minus |
3R | 7762007..7762393 | 51..437 | 100 | -> | Minus |
3R | 7762461..7762492 | 19..50 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:18:24 Download gff for
BO18168.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3586903..3586996 | 438..533 | 95 | -> | Minus |
arm_3R | 3587729..3588115 | 51..437 | 100 | -> | Minus |
arm_3R | 3588183..3588214 | 19..50 | 100 | | Minus |
BO18168.5prime Sequence
539 bp (539 high quality bases) assembled on 2006-10-13
> BO18168.5prime
GAAGTTATCAGTCGACATGAAATCAACACGCAAAGTAGTTGGGATTTTTT
TGGCCACCTGCCTGCTGCCTTTCACCGTTCTACAAAATGTTGCGGCACAA
GGAAGTTGTAGGAATCCCAACCAGAAACAGGGACAATGTTTGTCCATATA
CGACTGTCAAAGTCTGCTTTCCGTGATTCAGCAGTCTTATGTCAGCCCGG
AGGACAGAACCTTTCTTCGAAACTCACAGTGCCTCGATGGAGTAGGTCGC
CAGCCATATGTTTGCTGTACAAGTGATCGCAGCTTTGGATCCCAGGAGGC
CACCTCCGCAGCCCCTCCTCCAACGACTACCAGTTCAAGTTCACGAGGTC
AAGACGGTCAAGCGGGTCTGGGCAACCTGCTGCCCTCGCCACCCAAGTGC
GGGCCCCACTCCTTCAGCAATAAGGTCTATAATGGCAACGACACTGCTAT
TGACGAGTTCAACTGGATGGCACTGCTTGAGTACGTGGATAGGGACGGCG
GGAACTCAGTTGCGGTGGCAGTTGCAAGCTTTCTAGACC
BO18168.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3066-PD | 510 | CG3066-RD | 1..507 | 17..523 | 2535 | 100 | Plus |
CG3066-PA | 1176 | CG3066-RA | 1..475 | 17..491 | 2375 | 100 | Plus |
CG3066-PC | 1176 | CG3066-RC | 1..475 | 17..491 | 2375 | 100 | Plus |
CG3066-PA | 1176 | CG3066-RA | 480..511 | 492..523 | 160 | 100 | Plus |
CG3066-PC | 1176 | CG3066-RC | 480..511 | 492..523 | 160 | 100 | Plus |
CG3066-PB | 726 | CG3066-RB | 30..61 | 492..523 | 160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:05:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sp7-RF | 1565 | CG3066-RF | 156..666 | 17..523 | 2485 | 99.2 | Plus |
Sp7-RE | 1418 | CG3066-RE | 156..666 | 17..523 | 2485 | 99.2 | Plus |
Sp7-RA | 1851 | CG3066-RA | 589..1099 | 17..523 | 2485 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:05:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7762007..7762394 | 105..492 | 1940 | 100 | Plus |
3R | 32079331 | 3R | 7761187..7761276 | 17..106 | 450 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:05:38 has no hits.
BO18168.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:19:22 Download gff for
BO18168.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3066-PD | 1..510 | 17..526 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:44:03 Download gff for
BO18168.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sp7-RA | 583..1099 | 9..523 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:20:36 Download gff for
BO18168.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sp7-RA | 583..1099 | 9..523 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:20:36 Download gff for
BO18168.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7761181..7761274 | 9..104 | 95 | -> | Plus |
3R | 7762007..7762393 | 105..491 | 100 | -> | Plus |
3R | 7762461..7762492 | 492..523 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:44:03 Download gff for
BO18168.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3586903..3586996 | 9..104 | 95 | -> | Plus |
arm_3R | 3587729..3588115 | 105..491 | 100 | -> | Plus |
arm_3R | 3588183..3588214 | 492..523 | 100 | | Plus |
BO18168.complete Sequence
541 bp assembled on 2006-10-11
GenBank Submission: FJ634337
> BO18168.complete
GAAGTTATCAGTCGACATGAAATCAACACGCAAAGTAGTTGGGATTTTTT
TGGCCACCTGCCTGCTGCCTTTCACCGTTCTACAAAATGTTGCGGCACAA
GGAAGTTGTAGGAATCCCAACCAGAAACAGGGACAATGTTTGTCCATATA
CGACTGTCAAAGTCTGCTTTCCGTGATTCAGCAGTCTTATGTCAGCCCGG
AGGACAGAACCTTTCTTCGAAACTCACAGTGCCTCGATGGAGTAGGTCGC
CAGCCATATGTTTGCTGTACAAGTGATCGCAGCTTTGGATCCCAGGAGGC
CACCTCCGCAGCCCCTCCTCCAACGACTACCAGTTCAAGTTCACGAGGTC
AAGACGGTCAAGCGGGTCTGGGCAACCTGCTGCCCTCGCCACCCAAGTGC
GGGCCCCACTCCTTCAGCAATAAGGTCTATAATGGCAACGACACTGCTAT
TGACGAGTTCAACTGGATGGCACTGCTTGAGTACGTGGATAGGGACGGCG
GGAACTCAGTTGCGGTGGCAGTTGCAAGCTTTCTAGACCAT
BO18168.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:53:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sp7-RF | 1176 | CG3066-PF | 1..511 | 17..523 | 2460 | 99.2 | Plus |
Sp7-RE | 1176 | CG3066-PE | 1..511 | 17..523 | 2460 | 99.2 | Plus |
Sp7-RA | 1176 | CG3066-PA | 1..511 | 17..523 | 2460 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:53:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sp7-RF | 1565 | CG3066-RF | 156..666 | 17..523 | 2460 | 99.2 | Plus |
Sp7-RE | 1418 | CG3066-RE | 156..666 | 17..523 | 2460 | 99.2 | Plus |
Sp7-RA | 1851 | CG3066-RA | 589..1099 | 17..523 | 2460 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:53:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 7762007..7762394 | 105..492 | 1940 | 100 | Plus |
3R | 32079331 | 3R | 7761187..7761276 | 17..106 | 450 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:53:26 has no hits.
BO18168.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:39 Download gff for
BO18168.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sp7-RD | 1..510 | 17..526 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:40:57 Download gff for
BO18168.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sp7-RD | 561..1073 | 9..523 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:34:24 Download gff for
BO18168.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sp7-RA | 589..1099 | 17..525 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:41 Download gff for
BO18168.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sp7-RD | 561..1073 | 9..523 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:54:59 Download gff for
BO18168.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sp7-RA | 589..1099 | 17..525 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:54:59 Download gff for
BO18168.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 7761187..7761274 | 17..104 | 100 | -> | Plus |
3R | 7762007..7762393 | 105..491 | 100 | -> | Plus |
3R | 7762461..7762492 | 492..525 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:34:24 Download gff for
BO18168.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 3586909..3586996 | 17..104 | 100 | -> | Plus |
arm_3R | 3587729..3588115 | 105..491 | 100 | -> | Plus |
arm_3R | 3588183..3588214 | 492..525 | 94 | | Plus |
BO18168.pep Sequence
Translation from 16 to 541
> BO18168.pep
MKSTRKVVGIFLATCLLPFTVLQNVAAQGSCRNPNQKQGQCLSIYDCQSL
LSVIQQSYVSPEDRTFLRNSQCLDGVGRQPYVCCTSDRSFGSQEATSAAP
PPTTTSSSSRGQDGQAGLGNLLPSPPKCGPHSFSNKVYNGNDTAIDEFNW
MALLEYVDRDGGNSVAVAVASFLDH
BO18168.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:07:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sp7-PF | 391 | CG3066-PF | 1..161 | 1..161 | 846 | 98.8 | Plus |
Sp7-PE | 391 | CG3066-PE | 1..161 | 1..161 | 846 | 98.8 | Plus |
Sp7-PA | 391 | CG3066-PA | 1..161 | 1..161 | 846 | 98.8 | Plus |
CG9733-PB | 417 | CG9733-PB | 3..196 | 10..173 | 264 | 32.8 | Plus |
CG9733-PA | 418 | CG9733-PA | 25..197 | 31..173 | 259 | 34.4 | Plus |