Clone BO18169 Report

Search the DGRC for BO18169

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:181
Well:69
Vector:pDNR-Dual
Associated Gene/TranscriptPrx5037-RA
Protein status:BO18169.pep: validated full length
Sequenced Size:736

Clone Sequence Records

BO18169.3prime Sequence

736 bp (697 high quality bases) assembled on 2006-10-13

> BO18169.3prime
ATGGTCTAGAAAGCTTGCGCCGTGCTTGCTGAAGTACTTCTTGGACTCCT
CCACATCGGGCTTAATGGTAGCCGGATTCGAGTTGGGATTCCAGTTGGCC
GGGCAGACTTCTCCGTGCTGCTCGACGAACTGGAAGGCTTTGATCAGGCG
CAGAACCTCGTCGACGGATCGGCCCACGGGCAAATCATTAATGGAGTACT
GGCGCAGGATGCCATTGGGGTCAATGATGAAGGTGCCGCGCAGCGAGATG
CCCTCCTTGTCCAGCAACACATCGTAGTCGGCAGAGATCTTCTTGGTCAA
ATCGGAGAGGAGCGGGTACTTCAGCTGGCCCACTCCGCCGTTCTTGCGGT
CGACATTGCACCAGGTGAGATGGCTGAAGTGGGAGTCCACGGAAACGCCC
AGAACCTCGGTGTTAATGTCATGGAACTCCTTGATCCTCTCGCTAAATGC
AACAATTTCAGTGGGGCAAACGAATGTGAAATCCAGTGGGTAGAAGAAGA
GCACCAGGTACTTGCCCCTGTAGTCTTCCAGCTTAACCTCCTGGAAGCTG
TTGTCCACCACAGCCAGACCCTTGAAATCGGGAGCAGGTTGCTGGACGCG
GACTGCCGCAAGGGGAGCGGTTTGATGCAGGAGGCGGGCGGCAATCTGTT
TCTGCTGACTCAGGATGGCCTTGCCCCATCAGCGGCACATTGCGAAATCA
TGAGCGTGCTACGAAAGACATTGTCAACTGATAACT

BO18169.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG5826-PA 705 Prx5037-RA 45..702 676..19 3240 99.6 Minus
CG1633-PB 585 Jafrac1-RB 82..146 525..461 150 89.2 Minus
CG1633-PA 585 Jafrac1-RA 82..146 525..461 150 89.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:38:39
Subject Length Description Subject Range Query Range Score Percent Strand
Prx3-RA 1017 CG5826-RA 144..845 721..19 3415 99.3 Minus
Jafrac1-RE 976 CG1633-RE 185..249 525..461 220 89.2 Minus
Jafrac1-RD 1080 CG1633-RD 289..353 525..461 220 89.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:38:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17545394..17545853 19..478 2285 99.8 Plus
3R 32079331 3R 17545910..17546051 479..620 695 99.3 Plus
3R 32079331 3R 17546183..17546249 621..688 290 98.5 Plus
X 23542271 X 13331203..13331267 525..461 220 89.2 Minus
Blast to na_te.dros performed on 2015-02-10 16:38:36 has no hits.

BO18169.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:19:22 Download gff for BO18169.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5826-PA 1..705 18..721 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:18:29 Download gff for BO18169.3prime
Subject Subject Range Query Range Percent Splice Strand
Prx3-RA 144..845 19..721 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:03:38 Download gff for BO18169.3prime
Subject Subject Range Query Range Percent Splice Strand
Prx3-RA 144..845 19..721 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:03:38 Download gff for BO18169.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 17545910..17546051 479..620 99 <- Plus
3R 17546183..17546249 621..688 98 <- Plus
3R 17546356..17546388 689..721 94   Plus
3R 17545394..17545853 19..478 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:18:29 Download gff for BO18169.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13371905..13371971 621..688 98 <- Plus
arm_3R 13372078..13372110 689..721 94   Plus
arm_3R 13371116..13371575 19..478 99 <- Plus
arm_3R 13371632..13371773 479..620 99 <- Plus

BO18169.5prime Sequence

695 bp (682 high quality bases) assembled on 2006-10-13

> BO18169.5prime
GAAGTTATCAGTCGACATGTCTTTCGTAGCACGCTCACTGATTCGCAATG
TGCCGCTGATGGGCAAGGCCATCCTGAGTCAGCAGAAACAGATTGCCGCC
CGCCTCCTGCATCAAACCGCTCCCCTTGCGGCAGTCCGCGTCCAGCAACC
TGCTCCCGATTTCAAGGGTCTGGCTGTGGTGGACAACAGCTTCCAGGAGG
TTAAGCTGGAAGACTACAGGGGCAAGTACCTGGTGCTCTTCTTCTACCCA
CTGGATTTCACATTCGTTTGCCCCACTGAAATTGTTGCATTTAGCGAGAG
GATCAAGGAGTTCCATGACATTAACACCGAGGTTCTGGGCGTTTCCGTGG
ACTCCCACTTCAGCCATCTCACCTGGTGCAATGTCGACCGCAAGAACGGC
GGAGTGGGCCAGCTGAAGTACCCGCTCCTCTCCGATTTGACCAAGAAGAT
CTCTGCCGACTACGATGTGTTGCTGGACAAGGAGGGCATCTCGCTGCGCG
GCACCTTCATCATTGACCCCAATGGCATCCTGCGCCAGTACTCCATTAAT
GATTTGCCCGTGGGCCGATCCGTCGACGAGGTTCTGCGCCTGATCAAAGC
CTTCCAGTTCGTCGAGCAGCACGGAGAAGTCTGCCCGGCCAACTGGAATC
CCAACTCGAATCCGGCTACCATTAAGCCCGATGTGAAGGAGTCCA

BO18169.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG5826-PA 705 Prx5037-RA 1..679 17..695 3320 99.5 Plus
CG1633-PB 585 Jafrac1-RB 82..146 212..276 150 89.2 Plus
CG1633-PA 585 Jafrac1-RA 82..146 212..276 150 89.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:29:03
Subject Length Description Subject Range Query Range Score Percent Strand
Prx3-RA 1017 CG5826-RA 144..822 17..695 3350 99.6 Plus
Jafrac1-RE 976 CG1633-RE 185..249 212..276 220 89.2 Plus
Jafrac1-RD 1080 CG1633-RD 289..353 212..276 220 89.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:28:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17545417..17545853 695..259 2155 99.5 Minus
3R 32079331 3R 17545910..17546051 258..117 695 99.3 Minus
3R 32079331 3R 17546183..17546249 116..50 335 100 Minus
X 23542271 X 13331203..13331267 212..276 220 89.2 Plus
Blast to na_te.dros performed on 2015-02-11 17:28:59 has no hits.

BO18169.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:19:22 Download gff for BO18169.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5826-PA 1..678 17..694 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:22:05 Download gff for BO18169.5prime
Subject Subject Range Query Range Percent Splice Strand
Prx3-RA 144..821 17..694 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:06:20 Download gff for BO18169.5prime
Subject Subject Range Query Range Percent Splice Strand
Prx3-RA 144..821 17..694 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:06:20 Download gff for BO18169.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 17546183..17546249 50..116 100 <- Minus
3R 17546356..17546388 17..49 100   Minus
3R 17545910..17546051 117..258 99 <- Minus
3R 17545418..17545853 259..694 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:22:05 Download gff for BO18169.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13371140..13371575 259..694 99 <- Minus
arm_3R 13371632..13371773 117..258 99 <- Minus
arm_3R 13371905..13371971 50..116 100 <- Minus
arm_3R 13372078..13372110 17..49 100   Minus

BO18169.complete Sequence

736 bp assembled on 2006-10-11

GenBank Submission: FJ634338

> BO18169.complete
GAAGTTATCAGTCGACATGTCTTTCGTAGCACGCTCACTGATTCGCAATG
TGCCGCTGATGGGCAAGGCCATCCTGAGTCAGCAGAAACAGATTGCCGCC
CGCCTCCTGCATCAAACCGCTCCCCTTGCGGCAGTCCGCGTCCAGCAACC
TGCTCCCGATTTCAAGGGTCTGGCTGTGGTGGACAACAGCTTCCAGGAGG
TTAAGCTGGAAGACTACAGGGGCAAGTACCTGGTGCTCTTCTTCTACCCA
CTGGATTTCACATTCGTTTGCCCCACTGAAATTGTTGCATTTAGCGAGAG
GATCAAGGAGTTCCATGACATTAACACCGAGGTTCTGGGCGTTTCCGTGG
ACTCCCACTTCAGCCATCTCACCTGGTGCAATGTCGACCGCAAGAACGGC
GGAGTGGGCCAGCTGAAGTACCCGCTCCTCTCCGATTTGACCAAGAAGAT
CTCTGCCGACTACGATGTGTTGCTGGACAAGGAGGGCATCTCGCTGCGCG
GCACCTTCATCATTGACCCCAATGGCATCCTGCGCCAGTACTCCATTAAT
GATTTGCCCGTGGGCCGATCCGTCGACGAGGTTCTGCGCCTGATCAAAGC
CTTCCAGTTCGTCGAGCAGCACGGAGAAGTCTGCCCGGCCAACTGGAATC
CCAACTCGAATCCGGCTACCATTAAGCCCGATGTGGAGGAGTCCAAGAAG
TACTTCAGCAAGCACGGCGCAAGCTTTCTAGACCAT

BO18169.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:30:13
Subject Length Description Subject Range Query Range Score Percent Strand
Prx3-RA 705 CG5826-PA 1..702 17..718 3480 99.7 Plus
Jafrac1-RE 585 CG1633-PE 82..146 212..276 220 89.2 Plus
Jafrac1-RD 585 CG1633-PD 82..146 212..276 220 89.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:30:15
Subject Length Description Subject Range Query Range Score Percent Strand
Prx3-RA 1017 CG5826-RA 144..845 17..718 3480 99.7 Plus
Jafrac1-RE 976 CG1633-RE 185..249 212..276 220 89.2 Plus
Jafrac1-RD 1080 CG1633-RD 289..353 212..276 220 89.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:30:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 17545394..17545853 718..259 2285 99.8 Minus
3R 32079331 3R 17545910..17546051 258..117 695 99.3 Minus
3R 32079331 3R 17546183..17546249 116..50 335 100 Minus
X 23542271 X 13331203..13331267 212..276 220 89.2 Plus
Blast to na_te.dros performed on 2014-11-28 00:30:12 has no hits.

BO18169.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:42 Download gff for BO18169.complete
Subject Subject Range Query Range Percent Splice Strand
Prx5037-RA 1..705 17..719 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:40:59 Download gff for BO18169.complete
Subject Subject Range Query Range Percent Splice Strand
Prx5037-RA 122..823 17..718 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:53:32 Download gff for BO18169.complete
Subject Subject Range Query Range Percent Splice Strand
Prx3-RA 144..845 17..720 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:42 Download gff for BO18169.complete
Subject Subject Range Query Range Percent Splice Strand
Prx5037-RA 122..823 17..718 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:21:35 Download gff for BO18169.complete
Subject Subject Range Query Range Percent Splice Strand
Prx3-RA 144..845 17..720 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:21:35 Download gff for BO18169.complete
Subject Subject Range Query Range Percent Splice Strand
3R 17545392..17545853 259..720 99 <- Minus
3R 17545910..17546051 117..258 99 <- Minus
3R 17546183..17546249 50..116 100 <- Minus
3R 17546356..17546388 17..49 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:53:32 Download gff for BO18169.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13371114..13371575 259..720 99 <- Minus
arm_3R 13371632..13371773 117..258 99 <- Minus
arm_3R 13371905..13371971 50..116 100 <- Minus
arm_3R 13372078..13372110 17..49 100   Minus

BO18169.pep Sequence

Translation from 16 to 736

> BO18169.pep
MSFVARSLIRNVPLMGKAILSQQKQIAARLLHQTAPLAAVRVQQPAPDFK
GLAVVDNSFQEVKLEDYRGKYLVLFFYPLDFTFVCPTEIVAFSERIKEFH
DINTEVLGVSVDSHFSHLTWCNVDRKNGGVGQLKYPLLSDLTKKISADYD
VLLDKEGISLRGTFIIDPNGILRQYSINDLPVGRSVDEVLRLIKAFQFVE
QHGEVCPANWNPNSNPATIKPDVEESKKYFSKHGASFLDH

BO18169.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:06:59
Subject Length Description Subject Range Query Range Score Percent Strand
Prx3-PA 234 CG5826-PA 1..234 1..234 1215 100 Plus
Jafrac2-PC 242 CG1274-PC 43..241 32..233 641 60.4 Plus
Jafrac2-PB 242 CG1274-PB 43..241 32..233 641 60.4 Plus
Jafrac2-PA 242 CG1274-PA 43..241 32..233 641 60.4 Plus
Jafrac1-PE 194 CG1633-PE 3..190 41..230 594 57.9 Plus