Clone Sequence Records
BO18169.3prime Sequence
736 bp (697 high quality bases) assembled on 2006-10-13
> BO18169.3prime
ATGGTCTAGAAAGCTTGCGCCGTGCTTGCTGAAGTACTTCTTGGACTCCT
CCACATCGGGCTTAATGGTAGCCGGATTCGAGTTGGGATTCCAGTTGGCC
GGGCAGACTTCTCCGTGCTGCTCGACGAACTGGAAGGCTTTGATCAGGCG
CAGAACCTCGTCGACGGATCGGCCCACGGGCAAATCATTAATGGAGTACT
GGCGCAGGATGCCATTGGGGTCAATGATGAAGGTGCCGCGCAGCGAGATG
CCCTCCTTGTCCAGCAACACATCGTAGTCGGCAGAGATCTTCTTGGTCAA
ATCGGAGAGGAGCGGGTACTTCAGCTGGCCCACTCCGCCGTTCTTGCGGT
CGACATTGCACCAGGTGAGATGGCTGAAGTGGGAGTCCACGGAAACGCCC
AGAACCTCGGTGTTAATGTCATGGAACTCCTTGATCCTCTCGCTAAATGC
AACAATTTCAGTGGGGCAAACGAATGTGAAATCCAGTGGGTAGAAGAAGA
GCACCAGGTACTTGCCCCTGTAGTCTTCCAGCTTAACCTCCTGGAAGCTG
TTGTCCACCACAGCCAGACCCTTGAAATCGGGAGCAGGTTGCTGGACGCG
GACTGCCGCAAGGGGAGCGGTTTGATGCAGGAGGCGGGCGGCAATCTGTT
TCTGCTGACTCAGGATGGCCTTGCCCCATCAGCGGCACATTGCGAAATCA
TGAGCGTGCTACGAAAGACATTGTCAACTGATAACT
BO18169.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5826-PA | 705 | Prx5037-RA | 45..702 | 676..19 | 3240 | 99.6 | Minus |
CG1633-PB | 585 | Jafrac1-RB | 82..146 | 525..461 | 150 | 89.2 | Minus |
CG1633-PA | 585 | Jafrac1-RA | 82..146 | 525..461 | 150 | 89.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:38:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prx3-RA | 1017 | CG5826-RA | 144..845 | 721..19 | 3415 | 99.3 | Minus |
Jafrac1-RE | 976 | CG1633-RE | 185..249 | 525..461 | 220 | 89.2 | Minus |
Jafrac1-RD | 1080 | CG1633-RD | 289..353 | 525..461 | 220 | 89.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:38:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17545394..17545853 | 19..478 | 2285 | 99.8 | Plus |
3R | 32079331 | 3R | 17545910..17546051 | 479..620 | 695 | 99.3 | Plus |
3R | 32079331 | 3R | 17546183..17546249 | 621..688 | 290 | 98.5 | Plus |
X | 23542271 | X | 13331203..13331267 | 525..461 | 220 | 89.2 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:38:36 has no hits.
BO18169.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:19:22 Download gff for
BO18169.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5826-PA | 1..705 | 18..721 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:18:29 Download gff for
BO18169.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prx3-RA | 144..845 | 19..721 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:03:38 Download gff for
BO18169.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prx3-RA | 144..845 | 19..721 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:03:38 Download gff for
BO18169.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17545910..17546051 | 479..620 | 99 | <- | Plus |
3R | 17546183..17546249 | 621..688 | 98 | <- | Plus |
3R | 17546356..17546388 | 689..721 | 94 | | Plus |
3R | 17545394..17545853 | 19..478 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:18:29 Download gff for
BO18169.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13371905..13371971 | 621..688 | 98 | <- | Plus |
arm_3R | 13372078..13372110 | 689..721 | 94 | | Plus |
arm_3R | 13371116..13371575 | 19..478 | 99 | <- | Plus |
arm_3R | 13371632..13371773 | 479..620 | 99 | <- | Plus |
BO18169.5prime Sequence
695 bp (682 high quality bases) assembled on 2006-10-13
> BO18169.5prime
GAAGTTATCAGTCGACATGTCTTTCGTAGCACGCTCACTGATTCGCAATG
TGCCGCTGATGGGCAAGGCCATCCTGAGTCAGCAGAAACAGATTGCCGCC
CGCCTCCTGCATCAAACCGCTCCCCTTGCGGCAGTCCGCGTCCAGCAACC
TGCTCCCGATTTCAAGGGTCTGGCTGTGGTGGACAACAGCTTCCAGGAGG
TTAAGCTGGAAGACTACAGGGGCAAGTACCTGGTGCTCTTCTTCTACCCA
CTGGATTTCACATTCGTTTGCCCCACTGAAATTGTTGCATTTAGCGAGAG
GATCAAGGAGTTCCATGACATTAACACCGAGGTTCTGGGCGTTTCCGTGG
ACTCCCACTTCAGCCATCTCACCTGGTGCAATGTCGACCGCAAGAACGGC
GGAGTGGGCCAGCTGAAGTACCCGCTCCTCTCCGATTTGACCAAGAAGAT
CTCTGCCGACTACGATGTGTTGCTGGACAAGGAGGGCATCTCGCTGCGCG
GCACCTTCATCATTGACCCCAATGGCATCCTGCGCCAGTACTCCATTAAT
GATTTGCCCGTGGGCCGATCCGTCGACGAGGTTCTGCGCCTGATCAAAGC
CTTCCAGTTCGTCGAGCAGCACGGAGAAGTCTGCCCGGCCAACTGGAATC
CCAACTCGAATCCGGCTACCATTAAGCCCGATGTGAAGGAGTCCA
BO18169.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5826-PA | 705 | Prx5037-RA | 1..679 | 17..695 | 3320 | 99.5 | Plus |
CG1633-PB | 585 | Jafrac1-RB | 82..146 | 212..276 | 150 | 89.2 | Plus |
CG1633-PA | 585 | Jafrac1-RA | 82..146 | 212..276 | 150 | 89.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:29:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prx3-RA | 1017 | CG5826-RA | 144..822 | 17..695 | 3350 | 99.6 | Plus |
Jafrac1-RE | 976 | CG1633-RE | 185..249 | 212..276 | 220 | 89.2 | Plus |
Jafrac1-RD | 1080 | CG1633-RD | 289..353 | 212..276 | 220 | 89.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:28:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17545417..17545853 | 695..259 | 2155 | 99.5 | Minus |
3R | 32079331 | 3R | 17545910..17546051 | 258..117 | 695 | 99.3 | Minus |
3R | 32079331 | 3R | 17546183..17546249 | 116..50 | 335 | 100 | Minus |
X | 23542271 | X | 13331203..13331267 | 212..276 | 220 | 89.2 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:28:59 has no hits.
BO18169.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:19:22 Download gff for
BO18169.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5826-PA | 1..678 | 17..694 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:22:05 Download gff for
BO18169.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prx3-RA | 144..821 | 17..694 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:06:20 Download gff for
BO18169.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prx3-RA | 144..821 | 17..694 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:06:20 Download gff for
BO18169.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17546183..17546249 | 50..116 | 100 | <- | Minus |
3R | 17546356..17546388 | 17..49 | 100 | | Minus |
3R | 17545910..17546051 | 117..258 | 99 | <- | Minus |
3R | 17545418..17545853 | 259..694 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:22:05 Download gff for
BO18169.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13371140..13371575 | 259..694 | 99 | <- | Minus |
arm_3R | 13371632..13371773 | 117..258 | 99 | <- | Minus |
arm_3R | 13371905..13371971 | 50..116 | 100 | <- | Minus |
arm_3R | 13372078..13372110 | 17..49 | 100 | | Minus |
BO18169.complete Sequence
736 bp assembled on 2006-10-11
GenBank Submission: FJ634338
> BO18169.complete
GAAGTTATCAGTCGACATGTCTTTCGTAGCACGCTCACTGATTCGCAATG
TGCCGCTGATGGGCAAGGCCATCCTGAGTCAGCAGAAACAGATTGCCGCC
CGCCTCCTGCATCAAACCGCTCCCCTTGCGGCAGTCCGCGTCCAGCAACC
TGCTCCCGATTTCAAGGGTCTGGCTGTGGTGGACAACAGCTTCCAGGAGG
TTAAGCTGGAAGACTACAGGGGCAAGTACCTGGTGCTCTTCTTCTACCCA
CTGGATTTCACATTCGTTTGCCCCACTGAAATTGTTGCATTTAGCGAGAG
GATCAAGGAGTTCCATGACATTAACACCGAGGTTCTGGGCGTTTCCGTGG
ACTCCCACTTCAGCCATCTCACCTGGTGCAATGTCGACCGCAAGAACGGC
GGAGTGGGCCAGCTGAAGTACCCGCTCCTCTCCGATTTGACCAAGAAGAT
CTCTGCCGACTACGATGTGTTGCTGGACAAGGAGGGCATCTCGCTGCGCG
GCACCTTCATCATTGACCCCAATGGCATCCTGCGCCAGTACTCCATTAAT
GATTTGCCCGTGGGCCGATCCGTCGACGAGGTTCTGCGCCTGATCAAAGC
CTTCCAGTTCGTCGAGCAGCACGGAGAAGTCTGCCCGGCCAACTGGAATC
CCAACTCGAATCCGGCTACCATTAAGCCCGATGTGGAGGAGTCCAAGAAG
TACTTCAGCAAGCACGGCGCAAGCTTTCTAGACCAT
BO18169.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:30:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prx3-RA | 705 | CG5826-PA | 1..702 | 17..718 | 3480 | 99.7 | Plus |
Jafrac1-RE | 585 | CG1633-PE | 82..146 | 212..276 | 220 | 89.2 | Plus |
Jafrac1-RD | 585 | CG1633-PD | 82..146 | 212..276 | 220 | 89.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:30:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prx3-RA | 1017 | CG5826-RA | 144..845 | 17..718 | 3480 | 99.7 | Plus |
Jafrac1-RE | 976 | CG1633-RE | 185..249 | 212..276 | 220 | 89.2 | Plus |
Jafrac1-RD | 1080 | CG1633-RD | 289..353 | 212..276 | 220 | 89.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:30:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 17545394..17545853 | 718..259 | 2285 | 99.8 | Minus |
3R | 32079331 | 3R | 17545910..17546051 | 258..117 | 695 | 99.3 | Minus |
3R | 32079331 | 3R | 17546183..17546249 | 116..50 | 335 | 100 | Minus |
X | 23542271 | X | 13331203..13331267 | 212..276 | 220 | 89.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:30:12 has no hits.
BO18169.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:42 Download gff for
BO18169.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prx5037-RA | 1..705 | 17..719 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:40:59 Download gff for
BO18169.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prx5037-RA | 122..823 | 17..718 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:53:32 Download gff for
BO18169.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prx3-RA | 144..845 | 17..720 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:42 Download gff for
BO18169.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prx5037-RA | 122..823 | 17..718 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:21:35 Download gff for
BO18169.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prx3-RA | 144..845 | 17..720 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:21:35 Download gff for
BO18169.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 17545392..17545853 | 259..720 | 99 | <- | Minus |
3R | 17545910..17546051 | 117..258 | 99 | <- | Minus |
3R | 17546183..17546249 | 50..116 | 100 | <- | Minus |
3R | 17546356..17546388 | 17..49 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:53:32 Download gff for
BO18169.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13371114..13371575 | 259..720 | 99 | <- | Minus |
arm_3R | 13371632..13371773 | 117..258 | 99 | <- | Minus |
arm_3R | 13371905..13371971 | 50..116 | 100 | <- | Minus |
arm_3R | 13372078..13372110 | 17..49 | 100 | | Minus |
BO18169.pep Sequence
Translation from 16 to 736
> BO18169.pep
MSFVARSLIRNVPLMGKAILSQQKQIAARLLHQTAPLAAVRVQQPAPDFK
GLAVVDNSFQEVKLEDYRGKYLVLFFYPLDFTFVCPTEIVAFSERIKEFH
DINTEVLGVSVDSHFSHLTWCNVDRKNGGVGQLKYPLLSDLTKKISADYD
VLLDKEGISLRGTFIIDPNGILRQYSINDLPVGRSVDEVLRLIKAFQFVE
QHGEVCPANWNPNSNPATIKPDVEESKKYFSKHGASFLDH
BO18169.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:06:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prx3-PA | 234 | CG5826-PA | 1..234 | 1..234 | 1215 | 100 | Plus |
Jafrac2-PC | 242 | CG1274-PC | 43..241 | 32..233 | 641 | 60.4 | Plus |
Jafrac2-PB | 242 | CG1274-PB | 43..241 | 32..233 | 641 | 60.4 | Plus |
Jafrac2-PA | 242 | CG1274-PA | 43..241 | 32..233 | 641 | 60.4 | Plus |
Jafrac1-PE | 194 | CG1633-PE | 3..190 | 41..230 | 594 | 57.9 | Plus |