Clone Sequence Records
BO18170.3prime Sequence
791 bp (744 high quality bases) assembled on 2006-10-13
> BO18170.3prime
ATGGTCTAGAAAGCTTGCAACAAATGCCCAGCATTCGAGTGTTTTGATAA
CAAAGTCTTCTTGTGGCGCCAGAGGCTCATTGCCGTATGTGCTGCACTGT
TGCGATCGTCCCTGGTTCAGATCACCATCCAGCCACAGGCCAAAACGACC
GTCTCCAGCGCCAATCGAAAGGCTCTCCATGTTTCCTTTGATGAAGTACA
TATTCTCGCCAGTCCAATGGAACACCTTGAAGCTGGGGTTAAACTTGTAG
AGCAGGGACTCACCGGTGCCGTAAAAGTGATCCGACACATGCAGTGAGCA
GGAGGTGAGGGCACCAAATACGTTGTGCTCCGTATCCTCAATGACAATCA
GAACTGGACTCTCCAGACGCGCCATTTTGCGGTACAGGGAGTTCAGTGCG
AAACCATGTTGTGAGGTGCTGAAGATCAGGGACCAGGAGTATCCCTCGGC
TCTAGCCGGCAGATGTGAACAGAGCTTCTCGCGATGCTCCTCTGTAAGGA
TTTCTGTCTTGCCGATCAGGTCTGGTATGGGGAAGTCCAGGTCGAAGGAA
CCGGTGGCAAAGAGCGAGGTCTTGCGATATTCATCTGTGCTCATTGACAG
CACCTCCCAGGACTCGCGGGTCAGGTCGCTAATCTCCTCGCCATCCTGGC
TACCGCCTCCCATGCCGGCTTTGGTCGTGCCGCTCTTGGTCCACTCGGTG
TCCTCTTGAATCAGCTCGAAGCCACGCGCCTTGATCTGCTCTTCGTCCAG
CTCACCGTACAGGTGTTTCACCCAGGTGTTTATGAAGCGAT
BO18170.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:06:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32464-PO | 3078 | l(3)82Fd-RO | 2303..3075 | 791..19 | 3865 | 100 | Minus |
| CG32464-PP | 3945 | l(3)82Fd-RP | 3170..3942 | 791..19 | 3865 | 100 | Minus |
| CG32464-PN | 3813 | l(3)82Fd-RN | 3038..3810 | 791..19 | 3865 | 100 | Minus |
| CG32464-PM | 3039 | l(3)82Fd-RM | 2264..3036 | 791..19 | 3865 | 100 | Minus |
| CG32464-PG | 3102 | l(3)82Fd-RG | 2327..3099 | 791..19 | 3865 | 100 | Minus |
| CG32464-PB | 3813 | l(3)82Fd-RB | 3038..3810 | 791..19 | 3865 | 100 | Minus |
| CG32464-PJ | 3813 | l(3)82Fd-RJ | 3038..3810 | 791..19 | 3865 | 100 | Minus |
| CG32464-PL | 3813 | l(3)82Fd-RL | 3038..3810 | 791..19 | 3865 | 100 | Minus |
| CG32464-PF | 2610 | l(3)82Fd-RF | 1835..2607 | 791..19 | 3865 | 100 | Minus |
| CG32464-PK | 3168 | l(3)82Fd-RK | 2578..3165 | 606..19 | 2940 | 100 | Minus |
| CG32464-PA | 633 | l(3)82Fd-RA | 43..630 | 606..19 | 2940 | 100 | Minus |
| CG32464-PC | 804 | l(3)82Fd-RC | 216..801 | 604..19 | 2930 | 100 | Minus |
| CG32464-PI | 642 | l(3)82Fd-RI | 54..639 | 604..19 | 2930 | 100 | Minus |
| CG32464-PH | 579 | l(3)82Fd-RH | 1..576 | 594..19 | 2880 | 100 | Minus |
| CG32464-PK | 3168 | l(3)82Fd-RK | 2303..2490 | 791..604 | 940 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:23:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mtd-RAA | 3789 | CG32464-RA | 2014..2786 | 791..19 | 3865 | 100 | Minus |
| mtd-RY | 4905 | CG32464-RY | 3130..3902 | 791..19 | 3865 | 100 | Minus |
| mtd-RU | 5169 | CG32464-RU | 3394..4166 | 791..19 | 3865 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:23:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5292637..5292827 | 601..791 | 955 | 100 | Plus |
| 3R | 32079331 | 3R | 5274149..5274318 | 152..321 | 850 | 100 | Plus |
| 3R | 32079331 | 3R | 5274732..5274895 | 319..482 | 820 | 100 | Plus |
| 3R | 32079331 | 3R | 5273950..5274082 | 19..151 | 665 | 100 | Plus |
| 3R | 32079331 | 3R | 5274966..5275089 | 482..605 | 620 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:23:20 has no hits.
BO18170.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:19:23 Download gff for
BO18170.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32464-PM | 2264..3039 | 15..791 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 04:26:31 Download gff for
BO18170.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtd-RU | 3394..4170 | 14..791 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:09:45 Download gff for
BO18170.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtd-RU | 3394..4170 | 14..791 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:09:45 Download gff for
BO18170.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5273946..5274082 | 14..151 | 98 | <- | Plus |
| 3R | 5274149..5274318 | 152..321 | 100 | <- | Plus |
| 3R | 5274735..5274894 | 322..481 | 100 | <- | Plus |
| 3R | 5274966..5275087 | 482..603 | 100 | <- | Plus |
| 3R | 5292640..5292827 | 604..791 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 04:26:31 Download gff for
BO18170.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1118362..1118549 | 604..791 | 100 | | Plus |
| arm_3R | 1100457..1100616 | 322..481 | 100 | <- | Plus |
| arm_3R | 1100688..1100809 | 482..603 | 100 | <- | Plus |
| arm_3R | 1099668..1099804 | 14..151 | 98 | <- | Plus |
| arm_3R | 1099871..1100040 | 152..321 | 100 | <- | Plus |
BO18170.5prime Sequence
838 bp (791 high quality bases) assembled on 2006-10-13
> BO18170.5prime
GAAGTTATCAGTCGACATGCAGAACGTTATACTTACATCGCAATACTATT
GGTCACGTAGGGCTAGTCAAGATGTTTCCAGTTTGTCACGCAGCGTTGAC
AATTTGGCGATACCCGTGCGCAGGAGCAAATCGCGCAGCGTGGATCACGG
CCTTGCGGCTCCATTCGACTTGGACTCACTCCGCTCCAAAGTGGAGCAGC
GCTTCGAGAGCGTCGACAAATTATCAAGGCAAAAGTCTTCATTGCCCACC
ATACCCACCATTTCCTACACCGTGGGCAATCGCGACACCCTGACCTCCGT
GGCCGCCCGGTTCGACACCACGCCCTCGGAGCTGACCCACCTCAACCGGC
TGAACAGCTCCTTCATCTATCCGGGCCAGCAGCTGCTGGTGCCGGACAAG
AGCGCCAAGGACGACGCCTCCAGCAGCTCCACCCACGACGCGGACGGTGC
CAGCCTGTCCGGCAAATCGAGTCCGGTCGAGCGCAAGTTGTCCGGCGACG
AGAGCCGCGAGAAAGACATACTCGAGGGCCTGCGCCCCGGATCCCCAAAA
CCGGGACACATCGAGCGCGTGGGCGGCAGTAGCCAGCAGCAGCAGGCGGA
GGAGGAGGCCAACAAAAGCGACGATCCGGTGATCACACAGCGCTTCCTCA
AGATCAATGTGCGCCACATCACGGACGGACAGGGCGTGGTGGGCGGCGTC
CTGCTGGTCACGCCCAACGCCGTTATGTTCGATCCCAACGTCAGCGATCC
CCTGGTCATCGAGCACGGCCCGGAGAGCTACGGCGTCATTGCGCCCATGG
AGCTGGTGGTCAACGCCGCCATCTTCCACGACATTGCG
BO18170.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:06:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32464-PO | 3078 | l(3)82Fd-RO | 1..822 | 17..838 | 4085 | 99.8 | Plus |
| CG32464-PG | 3102 | l(3)82Fd-RG | 1..822 | 17..838 | 4085 | 99.8 | Plus |
| CG32464-PK | 3168 | l(3)82Fd-RK | 1..822 | 17..838 | 4085 | 99.8 | Plus |
| CG32464-PP | 3945 | l(3)82Fd-RP | 770..1557 | 51..838 | 3915 | 99.8 | Plus |
| CG32464-PN | 3813 | l(3)82Fd-RN | 770..1557 | 51..838 | 3915 | 99.8 | Plus |
| CG32464-PB | 3813 | l(3)82Fd-RB | 770..1557 | 51..838 | 3915 | 99.8 | Plus |
| CG32464-PJ | 3813 | l(3)82Fd-RJ | 770..1557 | 51..838 | 3915 | 99.8 | Plus |
| CG32464-PL | 3813 | l(3)82Fd-RL | 770..1557 | 51..838 | 3915 | 99.8 | Plus |
| CG32464-PD | 2037 | l(3)82Fd-RD | 168..882 | 124..838 | 3550 | 99.8 | Plus |
| CG32464-PM | 3039 | l(3)82Fd-RM | 172..783 | 227..838 | 3060 | 100 | Plus |
| CG32464-PF | 2610 | l(3)82Fd-RF | 30..354 | 514..838 | 1625 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:53:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mtd-RK | 4502 | CG32464-RK | 335..1156 | 17..838 | 4095 | 99.9 | Plus |
| mtd-RG | 4780 | CG32464-RG | 679..1500 | 17..838 | 4095 | 99.9 | Plus |
| mtd-RO | 4332 | CG32464-RO | 255..1076 | 17..838 | 4095 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:53:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5296313..5296637 | 838..514 | 1625 | 100 | Minus |
| 3R | 32079331 | 3R | 5298202..5298489 | 515..228 | 1440 | 100 | Minus |
| 3R | 32079331 | 3R | 5299469..5299576 | 228..121 | 525 | 99.1 | Minus |
| 3R | 32079331 | 3R | 5304110..5304183 | 124..51 | 370 | 100 | Minus |
| 3R | 32079331 | 3R | 5305709..5305745 | 53..17 | 185 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:53:19 has no hits.
BO18170.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:19:23 Download gff for
BO18170.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32464-PO | 1..822 | 17..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 17:04:04 Download gff for
BO18170.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtd-RO | 250..1076 | 12..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:48:45 Download gff for
BO18170.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtd-RO | 250..1076 | 12..838 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:48:45 Download gff for
BO18170.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5304111..5304182 | 52..123 | 100 | <- | Minus |
| 3R | 5305711..5305750 | 12..51 | 95 | | Minus |
| 3R | 5296313..5296635 | 516..838 | 100 | <- | Minus |
| 3R | 5298202..5298489 | 228..515 | 100 | <- | Minus |
| 3R | 5299470..5299573 | 124..227 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 17:04:04 Download gff for
BO18170.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1122035..1122357 | 516..838 | 100 | <- | Minus |
| arm_3R | 1123924..1124211 | 228..515 | 100 | <- | Minus |
| arm_3R | 1125192..1125295 | 124..227 | 99 | <- | Minus |
| arm_3R | 1129833..1129904 | 52..123 | 100 | <- | Minus |
| arm_3R | 1131433..1131472 | 12..51 | 95 | | Minus |
BO18170.complete Sequence
3133 bp assembled on 2010-05-05
GenBank Submission: KX798386
> BO18170.complete
GAAGTTATCAGTCGACATGCAGAACGTTATACTTACATCGCAATACTATT
GGTCACGTAGGGCTAGTCAAGATGTTTCCAGTTTGTCACGCAGCGTTGAC
AATTTGGCGATACCCGTGCGCAGGAGCAAATCGCGCAGCGTGGATCACGG
CCTTGCGGCTCCATTCGACTTGGACTCACTCCGCTCCAAAGTGGAGCAGC
GCTTCGAGAGCGTCGACAAATTATCAAGGCAAAAGTCTTCATTGCCCACC
ATACCCACCATTTCCTACACCGTGGGCAATCGCGACACCCTGACCTCCGT
GGCCGCCCGGTTCGACACCACGCCCTCGGAGCTGACCCACCTCAACCGGC
TGAACAGCTCCTTCATCTATCCGGGCCAGCAGCTGCTGGTGCCGGACAAG
AGCGCCAAGGACGACGCCTCCAGCAGCTCCACCCACGACGCGGACGGTGC
CAGCCTGTCCGGCAAATCGAGTCCGGTCGAGCGCAAGTTGTCCGGCGACG
AGAGCCGCGAGAAAGACATACTCGAGGGCCTGCGCCCCGGATCCCCAAAA
CCGGGACACATCGAGCGCGTGGGCGGCAGTAGCCAGCAGCAGCAGGCGGA
GGAGGAGGCCAACAAAAGCGACGATCCGGTGATCACACAGCGCTTCCTCA
AGATCAATGTGCGCCACATCACGGACGGACAGGGCGTGGTGGGCGGCGTC
CTGCTGGTCACGCCCAACGCCGTTATGTTCGATCCCAACGTCAGCGATCC
CCTGGTCATCGAGCACGGCCCGGAGAGCTACGGCGTCATTGCGCCCATGG
AGCTGGTGGTCAACGCCGCCATCTTCCACGACATTGCGCACATGCGAGTG
GCCGGAGGAGCAGGTCAGGGCCTGAACTCCGCCTCGGGAGACGCGGAGAA
ACCGGAAATCTACTATCCCAAACCAGTATTAGTCGAAGAAGACTCCAAGG
AGCTACCCGAGCAGCAGTCGCTGCTGGGCGAAGACGGTAATAAGCGCTTA
GATGCAGAAATAGGGTCGCTGGAAATCGCTGACGACCAAGAGTCGCTTTG
CTCCAGCACTGGACGCGATGGCGACGCGTTTCCCAAAGCCTTCGACCGCG
AACGTGTGGAGGACTCTTCTATGGAAGCCAAAGATAGCGCTAAGACTGAC
GCTCTAGACGATGAAGACAAGAAGGCCGGCCTGGGCCTCTCCAGCACTCG
CTCCACCCTCGAGGAGCGGCGCAAGAGTTTGTTGGATCACCACTGGGCCA
TTCCGAGCAAAGACCGCTATTGTTTGTCTAATTCCCGAAGATCCTCGGAA
GATGAGGGCGACAACGAGTCAAACGTTACCGTAGACAGTGGCGCACGAGT
CCAGGATCCGCACTCGGCCAATAGTTCGGTCAGCGGCGTGCCGCTTAGCC
AGCCCCCTGTGGCTGCTGCTGCAGCTGCCGCTGCCGTCGCACCCGCCTCC
GCCGTCGTTCCTCTGCCTCCCTCGGGCATTGATCTGGAGCACTTGGAGCA
GCTGTCCAAGCAGTCGTGCTACGACTCGGGCATCGATATCCGCGAGCCCG
TTCCCAACGTACAGCCGATACCAAAAAAAACCGTCTACAGCGACGCGGAC
ATTGTCCTCAGCTCCGACTGGGTACCACCGAAAACCATTGTGCCGACGCA
CTTCAGCGAGTCCCCGCCGCGCAGCACCATCCTCGGCCAGAGTCTCGACG
CCGGCACAGGAGGCGCAGGGGGCGTCCGTAAGAAGACCTCAAGCGTGAGC
TTCAGCGTCGACGACGAGGCCGCCCAGCAGGCTCAGGCCCAGTCGGCTGC
ACTGGCTGTCACAGACAAGCAGGCCGACAAGAAGAACAAGATGCTTAAAC
GTCTCTCATACCCCCTGACCTGGGTGGAGGGCTTGACTGGGGAGGGTGGT
GCCGTGCCGCCCGGCGGCGTGGGCAGTGGAAGCCTGAACAAGTCGGGAGA
CACAGACTCGGCGCCCAACACGGGTGACTCCAACCAAAGTGTATTTTCGA
AAGTATTCTCAAGACGTTCCTCAATCGGTACCTTTATTCGTCCTCACTCC
TCGGAGGGCACTTCGTCCAGCACCAAGCTGAAGGAGGCCAAGCAGGCGCC
CAAGTTGGACTACCGCTCCATGGTCTCCATGGACGACAAGCCGGAACTCT
TTATCAGTGTGGACAAACTCATCCCACGACCGGCTCGAGCCTGCCTTGAC
CCACCATTGTATCTACGCCTGCGCATGGGCAAGCCCATCGGCAAGGCCAT
TCCGCTGCCAACCTCTGTCATGTCCTACGGGAAGAACAAGTTGCGCGCTG
AGTACTGGTTCAGTGTGCCAAAGAATCGCGTTGATGAGCTCTATCGCTTC
ATAAACACCTGGGTGAAACACCTGTACGGTGAGCTGGACGAAGAGCAGAT
CAAGGCGCGTGGCTTCGAGCTGATTCAAGAGGACACCGAGTGGACCAAGA
GCGGCACGACCAAAGCCGGCATGGGAGGCGGTAGCCAGGATGGCGAGGAG
ATTAGCGACCTGACCCGCGAGTCCTGGGAGGTGCTGTCAATGAGCACAGA
TGAATATCGCAAGACCTCGCTCTTTGCCACCGGTTCCTTCGACCTGGACT
TCCCCATACCAGACCTGATCGGCAAGACAGAAATCCTTACAGAGGAGCAT
CGCGAGAAGCTCTGTTCACATCTGCCGGCTAGAGCCGAGGGATACTCCTG
GTCCCTGATCTTCAGCACCTCACAACATGGTTTCGCACTGAACTCCCTGT
ACCGCAAAATGGCGCGTCTGGAGAGTCCAGTTCTGATTGTCATTGAGGAT
ACGGAGCACAACGTATTTGGTGCCCTCACCTCCTGCTCACTGCATGTGTC
GGATCACTTTTACGGCACCGGTGAGTCCCTGCTCTACAAGTTTAACCCCA
GCTTCAAGGTGTTCCATTGGACTGGCGAGAATATGTACTTCATCAAAGGA
AACATGGAGAGCCTTTCGATTGGCGCTGGAGACGGTCGTTTTGGCCTGTG
GCTGGATGGTGATCTGAACCAGGGACGATCGCAACAGTGCAGCACATACG
GCAATGAGCCTCTGGCGCCACAAGAAGACTTTGTTATCAAAACACTCGAA
TGCTGGGCATTTGTTGCAAGCTTTCTAGACCAT
BO18170.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:32:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mtd-RG | 3102 | CG32464-PG | 1..3099 | 17..3115 | 15480 | 100 | Plus |
| mtd-RY | 3477 | CG32464-PY | 875..3474 | 516..3115 | 13000 | 100 | Plus |
| mtd-RAA | 2616 | CG32464-PAA | 30..2613 | 514..3115 | 12705 | 99.3 | Plus |
| mtd-RY | 3477 | CG32464-PY | 768..874 | 121..227 | 520 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:32:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mtd-RG | 4780 | CG32464-RG | 679..3777 | 17..3115 | 15480 | 100 | Plus |
| mtd-RY | 4905 | CG32464-RY | 1303..3902 | 516..3115 | 13000 | 100 | Plus |
| mtd-RAA | 3789 | CG32464-RA | 203..2786 | 514..3115 | 12705 | 99.3 | Plus |
| mtd-RY | 4905 | CG32464-RY | 1196..1302 | 121..227 | 520 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:32:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5294306..5294880 | 1840..1266 | 2875 | 100 | Minus |
| 3R | 32079331 | 3R | 5296147..5296637 | 1004..514 | 2455 | 100 | Minus |
| 3R | 32079331 | 3R | 5298202..5298489 | 515..228 | 1440 | 100 | Minus |
| 3R | 32079331 | 3R | 5292637..5292842 | 2533..2328 | 1030 | 100 | Minus |
| 3R | 32079331 | 3R | 5294062..5294236 | 2013..1839 | 875 | 100 | Minus |
| 3R | 32079331 | 3R | 5274149..5274318 | 2982..2813 | 850 | 100 | Minus |
| 3R | 32079331 | 3R | 5274732..5274895 | 2815..2652 | 820 | 100 | Minus |
| 3R | 32079331 | 3R | 5292998..5293160 | 2328..2166 | 815 | 100 | Minus |
| 3R | 32079331 | 3R | 5295641..5295797 | 1266..1110 | 785 | 100 | Minus |
| 3R | 32079331 | 3R | 5293219..5293372 | 2165..2012 | 770 | 100 | Minus |
| 3R | 32079331 | 3R | 5273950..5274082 | 3115..2983 | 665 | 100 | Minus |
| 3R | 32079331 | 3R | 5274966..5275089 | 2652..2529 | 620 | 100 | Minus |
| 3R | 32079331 | 3R | 5295856..5295964 | 1112..1004 | 545 | 100 | Minus |
| 3R | 32079331 | 3R | 5299469..5299576 | 228..121 | 525 | 99.1 | Minus |
| 3R | 32079331 | 3R | 5304110..5304183 | 124..51 | 370 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:32:17 has no hits.
BO18170.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-05 18:40:15 Download gff for
BO18170.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(3)82Fd-RG | 679..3777 | 17..3117 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:21:45 Download gff for
BO18170.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtd-RG | 679..3777 | 17..3117 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:31:14 Download gff for
BO18170.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mtd-RG | 679..3777 | 17..3117 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:31:14 Download gff for
BO18170.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5293219..5293370 | 2014..2165 | 100 | <- | Minus |
| 3R | 5274735..5274894 | 2653..2812 | 100 | <- | Minus |
| 3R | 5274966..5275087 | 2531..2652 | 100 | <- | Minus |
| 3R | 5292640..5292841 | 2329..2530 | 100 | <- | Minus |
| 3R | 5292998..5293160 | 2166..2328 | 100 | <- | Minus |
| 3R | 5273948..5274082 | 2983..3117 | 98 | <- | Minus |
| 3R | 5274149..5274318 | 2813..2982 | 100 | <- | Minus |
| 3R | 5294062..5294234 | 1841..2013 | 100 | <- | Minus |
| 3R | 5294306..5294879 | 1267..1840 | 100 | <- | Minus |
| 3R | 5295641..5295795 | 1112..1266 | 100 | <- | Minus |
| 3R | 5295857..5295963 | 1005..1111 | 100 | <- | Minus |
| 3R | 5296147..5296635 | 516..1004 | 100 | <- | Minus |
| 3R | 5298202..5298489 | 228..515 | 100 | <- | Minus |
| 3R | 5299470..5299573 | 124..227 | 99 | <- | Minus |
| 3R | 5304111..5304182 | 52..123 | 100 | <- | Minus |
| 3R | 5305711..5305745 | 17..51 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:21:45 Download gff for
BO18170.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1100688..1100809 | 2531..2652 | 100 | <- | Minus |
| arm_3R | 1129833..1129904 | 52..123 | 100 | <- | Minus |
| arm_3R | 1131433..1131467 | 17..51 | 100 | | Minus |
| arm_3R | 1118941..1119092 | 2014..2165 | 100 | <- | Minus |
| arm_3R | 1119784..1119956 | 1841..2013 | 100 | <- | Minus |
| arm_3R | 1118362..1118563 | 2329..2530 | 100 | <- | Minus |
| arm_3R | 1118720..1118882 | 2166..2328 | 100 | <- | Minus |
| arm_3R | 1099670..1099804 | 2983..3117 | 98 | <- | Minus |
| arm_3R | 1099871..1100040 | 2813..2982 | 100 | <- | Minus |
| arm_3R | 1100457..1100616 | 2653..2812 | 100 | <- | Minus |
| arm_3R | 1120028..1120601 | 1267..1840 | 100 | <- | Minus |
| arm_3R | 1121363..1121517 | 1112..1266 | 100 | <- | Minus |
| arm_3R | 1121579..1121685 | 1005..1111 | 100 | <- | Minus |
| arm_3R | 1121869..1122357 | 516..1004 | 100 | <- | Minus |
| arm_3R | 1123924..1124211 | 228..515 | 100 | <- | Minus |
| arm_3R | 1125192..1125295 | 124..227 | 99 | <- | Minus |
BO18170.pep Sequence
Translation from 16 to 3133
> BO18170.pep
MQNVILTSQYYWSRRASQDVSSLSRSVDNLAIPVRRSKSRSVDHGLAAPF
DLDSLRSKVEQRFESVDKLSRQKSSLPTIPTISYTVGNRDTLTSVAARFD
TTPSELTHLNRLNSSFIYPGQQLLVPDKSAKDDASSSSTHDADGASLSGK
SSPVERKLSGDESREKDILEGLRPGSPKPGHIERVGGSSQQQQAEEEANK
SDDPVITQRFLKINVRHITDGQGVVGGVLLVTPNAVMFDPNVSDPLVIEH
GPESYGVIAPMELVVNAAIFHDIAHMRVAGGAGQGLNSASGDAEKPEIYY
PKPVLVEEDSKELPEQQSLLGEDGNKRLDAEIGSLEIADDQESLCSSTGR
DGDAFPKAFDRERVEDSSMEAKDSAKTDALDDEDKKAGLGLSSTRSTLEE
RRKSLLDHHWAIPSKDRYCLSNSRRSSEDEGDNESNVTVDSGARVQDPHS
ANSSVSGVPLSQPPVAAAAAAAAVAPASAVVPLPPSGIDLEHLEQLSKQS
CYDSGIDIREPVPNVQPIPKKTVYSDADIVLSSDWVPPKTIVPTHFSESP
PRSTILGQSLDAGTGGAGGVRKKTSSVSFSVDDEAAQQAQAQSAALAVTD
KQADKKNKMLKRLSYPLTWVEGLTGEGGAVPPGGVGSGSLNKSGDTDSAP
NTGDSNQSVFSKVFSRRSSIGTFIRPHSSEGTSSSTKLKEAKQAPKLDYR
SMVSMDDKPELFISVDKLIPRPARACLDPPLYLRLRMGKPIGKAIPLPTS
VMSYGKNKLRAEYWFSVPKNRVDELYRFINTWVKHLYGELDEEQIKARGF
ELIQEDTEWTKSGTTKAGMGGGSQDGEEISDLTRESWEVLSMSTDEYRKT
SLFATGSFDLDFPIPDLIGKTEILTEEHREKLCSHLPARAEGYSWSLIFS
TSQHGFALNSLYRKMARLESPVLIVIEDTEHNVFGALTSCSLHVSDHFYG
TGESLLYKFNPSFKVFHWTGENMYFIKGNMESLSIGAGDGRFGLWLDGDL
NQGRSQQCSTYGNEPLAPQEDFVIKTLECWAFVASFLDH
BO18170.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:08:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mtd-PG | 1033 | CG32464-PG | 1..1033 | 1..1033 | 5325 | 100 | Plus |
| mtd-PO | 1025 | CG32464-PO | 1..1025 | 1..1033 | 5262 | 99.2 | Plus |
| mtd-PJ | 1270 | CG32464-PJ | 258..1270 | 13..1033 | 5195 | 99.2 | Plus |
| mtd-PB | 1270 | CG32464-PB | 258..1270 | 13..1033 | 5195 | 99.2 | Plus |
| mtd-PN | 1270 | CG32464-PN | 258..1270 | 13..1033 | 5195 | 99.2 | Plus |
