Clone Sequence Records
BO18172.3prime Sequence
821 bp (765 high quality bases) assembled on 2006-10-13
> BO18172.3prime
ATGGTCTAGAAAGCTTGCAATCTCTAGCTTGGCATCGTCCGGCGTGCCGC
GATGTATTAACAACTTGATGCGCTCATTACGTGCAGTTATTTTCGAATGC
AGATTTTTGACACGTTCCCGGCATGCCTGTTGCTCGGCTAATGCGCGCTC
GCGATCGTGCGGCAAGTACGTGGGCGCCATCACCAGGCGGAGCTGTTGCT
CCTCCTGGATGATACGCTGGCGCAGGGACTGCATCTGCTGTTGGTAAACG
TCGATCTGGGCCAGCGTCTGCTCGAGGCTCTGCGACTTGGCCTTGACCAA
TTCGCCGAGGCCGTCGAGCACGCGCACCAGATCATCGACGTTCTCGCTCA
GGCGCGGATCACCGCCCATGCCATTGCGGAAATGAACCTCCAGTTTTTCG
ATGGACAGTCTCAGTTTCGTTTTCTGCACATTGATATCGGCCAGGGTCTT
CTCACAGAAACCGAGCTGATCGCGCAGCGGTTTCTTCTGCTGCTGCGAGG
AGTCCAGTCCCTGCTTCGTCTTTTCGTGCCAGGAGCGTATATCCTTAATC
TTGCGTTCACATTGGTCCCATTCCTCGCAGGCCTCTTGCAGCAGGGAGTT
CCTCTCTAGCAGCACCGCTTCCACGGATATCTTCGCATCCTCGGCCTCCT
GCAGTTTGTCCTTGAGATCGCCCACAGTCGTCACTTGGCCAATGTGCTCC
AGTTCCTTGTCCATTTCGCTCAGATGCTTCACAATCGGTTTAATACTCTT
CACAGACGTCACATAGTCGTTCAATTTGTTGCGTGCCTCGGGCAGGGTGC
GCAGCTCGATGGTCTGGTCAA
BO18172.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33715-PB | 23235 | Msp-300-RB | 22430..23232 | 821..19 | 4015 | 100 | Minus |
CG33715-PE | 28821 | Msp-300-RE | 419..1116 | 821..124 | 3490 | 100 | Minus |
CG33715-PD | 35124 | Msp-300-RD | 22430..23125 | 821..126 | 3480 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:52:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Msp300-RF | 2610 | CG42768-RF | 1526..2328 | 821..19 | 4015 | 100 | Minus |
Msp300-RB | 25760 | CG42768-RB | 24676..25478 | 821..19 | 4015 | 100 | Minus |
Msp300-RG | 43121 | CG42768-RG | 1262..1959 | 821..124 | 3490 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:52:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5155587..5155850 | 389..126 | 1320 | 100 | Minus |
2L | 23513712 | 2L | 5154997..5155217 | 821..601 | 1105 | 100 | Minus |
2L | 23513712 | 2L | 5155321..5155536 | 601..386 | 1080 | 100 | Minus |
2L | 23513712 | 2L | 5157864..5157981 | 136..19 | 560 | 98.3 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:52:26 has no hits.
BO18172.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:19:25 Download gff for
BO18172.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33715-PB | 22432..23235 | 18..819 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:31:10 Download gff for
BO18172.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Msp-300-RB | 24678..25478 | 19..819 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:00:30 Download gff for
BO18172.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Msp300-RB | 24678..25478 | 19..819 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:00:30 Download gff for
BO18172.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5154999..5155217 | 601..819 | 100 | -> | Minus |
2L | 5155322..5155534 | 388..600 | 100 | -> | Minus |
2L | 5155589..5155849 | 127..387 | 100 | -> | Minus |
2L | 5157874..5157981 | 19..126 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:31:10 Download gff for
BO18172.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5154999..5155217 | 601..819 | 100 | -> | Minus |
arm_2L | 5155322..5155534 | 388..600 | 100 | -> | Minus |
arm_2L | 5155589..5155849 | 127..387 | 100 | -> | Minus |
arm_2L | 5157874..5157981 | 19..126 | 100 | | Minus |
BO18172.5prime Sequence
764 bp (707 high quality bases) assembled on 2006-10-13
> BO18172.5prime
GAAGTTATCAGTCGACATGGAGACCAAAGAGAAGGATTTCAAGCGGGCCA
AGACCGTGCGCACCGAATATGTGGACGGTGTGGACGAGGTGCAGCGTTGG
CTGCTCCAGGCAGAGGTGCAGGTGCAGGAGAGAAGCCTCACACCCACACA
GATGAAGGAGCTGCTGCAGCGCATTAACCACGAGATCACCGCCATCTACG
AACGCTTCACCCTGGTCAAGACCAACGGTCAGCTGATCATCGAGAACTGT
CGCAACAGCGAGGAGAAGACGCTGGTGCAGACGACCATCGATCAGTTGGC
CGCATCGCTGGCCCAGGTACGCGGTTGGCTGGATGAGAAGAAGCAGGCGG
TGGGCGATAGTCTGGACGCGTGGACGAGGTTCATGAACCTCTACCAGATC
GTGATGTCGTGGGCATCCGAGAAGCGCAACTTCATTGACCAGACCATCGA
GCTGCGCACCCTGCCCGAGGCACGCAACAAATTGAACGACTATGTGACGT
CTGTGAAGAGTATTAAACCGATTGTGAAGCATCTGAGCGAAATGGACAAG
GAACTGGAGCACATTGGCCAAGTGACGACTGTGGGCGATCTCAAGGACAA
ACTGCAGGAGGCCGAGGATGCGAAGATATCCGTGGAAGCGGTGCTGCTAG
AGAGGAACTCCCTGCTGCAAGAGGCCTGCGAGGAATGGGACCAATGTGAA
CGCAAGATTAAGGATATACGCTCCTGGCACGAAAAGACGAAGCAGGGACT
GGACTCCTCGCAGC
BO18172.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33715-PB | 23235 | Msp-300-RB | 22011..22759 | 16..764 | 3745 | 100 | Plus |
CG33715-PD | 35124 | Msp-300-RD | 22011..22759 | 16..764 | 3745 | 100 | Plus |
CG33715-PE | 28821 | Msp-300-RE | 1..748 | 17..764 | 3740 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:52:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Msp300-RI | 36339 | CG42768-RI | 23145..23893 | 16..764 | 3745 | 100 | Plus |
Msp300-RH | 37913 | CG42768-RH | 23145..23893 | 16..764 | 3745 | 100 | Plus |
Msp300-RG | 43121 | CG42768-RG | 843..1591 | 16..764 | 3745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:52:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5154578..5155217 | 16..655 | 3200 | 100 | Plus |
2L | 23513712 | 2L | 5155321..5155430 | 655..764 | 550 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:52:39 has no hits.
BO18172.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:19:26 Download gff for
BO18172.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33715-PD | 22005..22759 | 10..764 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:21:57 Download gff for
BO18172.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Msp-300-RG | 837..1591 | 10..764 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:28:58 Download gff for
BO18172.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Msp300-RG | 837..1591 | 10..764 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:28:58 Download gff for
BO18172.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5155322..5155430 | 656..764 | 100 | | Plus |
2L | 5154572..5155217 | 10..655 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:21:57 Download gff for
BO18172.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5154572..5155217 | 10..655 | 99 | -> | Plus |
arm_2L | 5155322..5155430 | 656..764 | 100 | | Plus |
BO18172.complete Sequence
1255 bp assembled on 2006-10-11
GenBank Submission: FJ634339
> BO18172.complete
GAAGTTATCAGTCGACATGGAGACCAAAGAGAAGGATTTCAAGCGGGCCA
AGACCGTGCGCACCGAATATGTGGACGGTGTGGACGAGGTGCAGCGTTGG
CTGCTCCAGGCAGAGGTGCAGGTGCAGGAGAGAAGCCTCACACCCACACA
GATGAAGGAGCTGCTGCAGCGCATTAACCACGAGATCACCGCCATCTACG
AACGCTTCACCCTGGTCAAGACCAACGGTCAGCTGATCATCGAGAACTGT
CGCAACAGCGAGGAGAAGACGCTGGTGCAGACGACCATCGATCAGTTGGC
CGCATCGCTGGCCCAGGTACGCGGTTGGCTGGATGAGAAGAAGCAGGCGG
TGGGCGATAGTCTGGACGCGTGGACGAGGTTCATGAACCTCTACCAGATC
GTGATGTCGTGGGCATCCGAGAAGCGCAACTTCATTGACCAGACCATCGA
GCTGCGCACCCTGCCCGAGGCACGCAACAAATTGAACGACTATGTGACGT
CTGTGAAGAGTATTAAACCGATTGTGAAGCATCTGAGCGAAATGGACAAG
GAACTGGAGCACATTGGCCAAGTGACGACTGTGGGCGATCTCAAGGACAA
ACTGCAGGAGGCCGAGGATGCGAAGATATCCGTGGAAGCGGTGCTGCTAG
AGAGGAACTCCCTGCTGCAAGAGGCCTGCGAGGAATGGGACCAATGTGAA
CGCAAGATTAAGGATATACGCTCCTGGCACGAAAAGACGAAGCAGGGACT
GGACTCCTCGCAGCAGCAGAAGAAACCGCTGCGCGATCAGCTCGGTTTCT
GTGAGAAGACCCTGGCCGATATCAATGTGCAGAAAACGAAACTGAGACTG
TCCATCGAAAAACTGGAGGTTCATTTCCGCAATGGCATGGGCGGTGATCC
GCGCCTGAGCGAGAACGTCGATGATCTGGTGCGCGTGCTCGACGGCCTCG
GCGAATTGGTCAAGGCCAAGTCGCAGAGCCTCGAGCAGACGCTGGCCCAG
ATCGACGTTTACCAACAGCAGATGCAGTCCCTGCGCCAGCGTATCATCCA
GGAGGAGCAACAGCTCCGCCTGGTGATGGCGCCCACGTACTTGCCGCACG
ATCGCGAGCGCGCATTAGCCGAGCAACAGGCATGCCGGGAACGTGTCAAA
AATCTGCATTCGAAAATAACTGCACGTAATGAGCGCATCAAGTTGTTAAT
ACATCGCGGCACGCCGGACGATGCCAAGCTAGAGATTGCAAGCTTTCTAG
ACCAT
BO18172.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:04:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Msp300-RB | 25149 | CG42768-PB | 23925..25146 | 16..1237 | 6110 | 100 | Plus |
Msp300-RF | 1224 | CG42768-PF | 1..1221 | 17..1237 | 6105 | 100 | Plus |
Msp300-RG | 40623 | CG42768-PG | 1..1116 | 17..1132 | 5580 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:04:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Msp300-RF | 2610 | CG42768-RF | 1107..2328 | 16..1237 | 6110 | 100 | Plus |
Msp300-RB | 25760 | CG42768-RB | 24257..25478 | 16..1237 | 6110 | 100 | Plus |
Msp300-RG | 43121 | CG42768-RG | 843..1959 | 16..1132 | 5585 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:04:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5154578..5155217 | 16..655 | 3200 | 100 | Plus |
2L | 23513712 | 2L | 5155587..5155850 | 867..1130 | 1320 | 100 | Plus |
2L | 23513712 | 2L | 5155321..5155536 | 655..870 | 1080 | 100 | Plus |
2L | 23513712 | 2L | 5157864..5157981 | 1120..1237 | 560 | 98.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:04:39 has no hits.
BO18172.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:43 Download gff for
BO18172.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Msp-300-RB | 23919..25149 | 10..1238 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:41:01 Download gff for
BO18172.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Msp-300-RF | 1101..2328 | 10..1237 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:09 Download gff for
BO18172.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Msp-300-RB | 24258..25478 | 17..1239 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:43 Download gff for
BO18172.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Msp-300-RB | 23919..25146 | 10..1237 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:28 Download gff for
BO18172.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Msp300-RB | 24258..25478 | 17..1239 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:59:28 Download gff for
BO18172.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5154579..5155217 | 17..655 | 100 | -> | Plus |
2L | 5155322..5155534 | 656..868 | 100 | -> | Plus |
2L | 5155589..5155849 | 869..1129 | 100 | -> | Plus |
2L | 5157874..5157981 | 1130..1239 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:09 Download gff for
BO18172.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5154579..5155217 | 17..655 | 100 | -> | Plus |
arm_2L | 5155322..5155534 | 656..868 | 100 | -> | Plus |
arm_2L | 5155589..5155849 | 869..1129 | 100 | -> | Plus |
arm_2L | 5157874..5157981 | 1130..1239 | 98 | | Plus |
BO18172.pep Sequence
Translation from 16 to 1255
> BO18172.pep
METKEKDFKRAKTVRTEYVDGVDEVQRWLLQAEVQVQERSLTPTQMKELL
QRINHEITAIYERFTLVKTNGQLIIENCRNSEEKTLVQTTIDQLAASLAQ
VRGWLDEKKQAVGDSLDAWTRFMNLYQIVMSWASEKRNFIDQTIELRTLP
EARNKLNDYVTSVKSIKPIVKHLSEMDKELEHIGQVTTVGDLKDKLQEAE
DAKISVEAVLLERNSLLQEACEEWDQCERKIKDIRSWHEKTKQGLDSSQQ
QKKPLRDQLGFCEKTLADINVQKTKLRLSIEKLEVHFRNGMGGDPRLSEN
VDDLVRVLDGLGELVKAKSQSLEQTLAQIDVYQQQMQSLRQRIIQEEQQL
RLVMAPTYLPHDRERALAEQQACRERVKNLHSKITARNERIKLLIHRGTP
DDAKLEIASFLDH
BO18172.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:06:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Msp300-PF | 407 | CG42768-PF | 1..407 | 1..407 | 2062 | 100 | Plus |
Msp300-PB | 8382 | CG42768-PB | 7976..8382 | 1..407 | 2062 | 100 | Plus |
Msp300-PM | 6685 | CG42768-PM | 1..380 | 1..380 | 1894 | 98.4 | Plus |
Msp300-PE | 9606 | CG42768-PE | 1..380 | 1..380 | 1894 | 98.4 | Plus |
Msp300-PG | 13540 | CG42768-PG | 1..380 | 1..380 | 1894 | 98.4 | Plus |