Clone BO18172 Report

Search the DGRC for BO18172

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:181
Well:72
Vector:pDNR-Dual
Associated Gene/TranscriptMsp-300-RF
Protein status:BO18172.pep: validated full length
Sequenced Size:1255

Clone Sequence Records

BO18172.3prime Sequence

821 bp (765 high quality bases) assembled on 2006-10-13

> BO18172.3prime
ATGGTCTAGAAAGCTTGCAATCTCTAGCTTGGCATCGTCCGGCGTGCCGC
GATGTATTAACAACTTGATGCGCTCATTACGTGCAGTTATTTTCGAATGC
AGATTTTTGACACGTTCCCGGCATGCCTGTTGCTCGGCTAATGCGCGCTC
GCGATCGTGCGGCAAGTACGTGGGCGCCATCACCAGGCGGAGCTGTTGCT
CCTCCTGGATGATACGCTGGCGCAGGGACTGCATCTGCTGTTGGTAAACG
TCGATCTGGGCCAGCGTCTGCTCGAGGCTCTGCGACTTGGCCTTGACCAA
TTCGCCGAGGCCGTCGAGCACGCGCACCAGATCATCGACGTTCTCGCTCA
GGCGCGGATCACCGCCCATGCCATTGCGGAAATGAACCTCCAGTTTTTCG
ATGGACAGTCTCAGTTTCGTTTTCTGCACATTGATATCGGCCAGGGTCTT
CTCACAGAAACCGAGCTGATCGCGCAGCGGTTTCTTCTGCTGCTGCGAGG
AGTCCAGTCCCTGCTTCGTCTTTTCGTGCCAGGAGCGTATATCCTTAATC
TTGCGTTCACATTGGTCCCATTCCTCGCAGGCCTCTTGCAGCAGGGAGTT
CCTCTCTAGCAGCACCGCTTCCACGGATATCTTCGCATCCTCGGCCTCCT
GCAGTTTGTCCTTGAGATCGCCCACAGTCGTCACTTGGCCAATGTGCTCC
AGTTCCTTGTCCATTTCGCTCAGATGCTTCACAATCGGTTTAATACTCTT
CACAGACGTCACATAGTCGTTCAATTTGTTGCGTGCCTCGGGCAGGGTGC
GCAGCTCGATGGTCTGGTCAA

BO18172.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG33715-PB 23235 Msp-300-RB 22430..23232 821..19 4015 100 Minus
CG33715-PE 28821 Msp-300-RE 419..1116 821..124 3490 100 Minus
CG33715-PD 35124 Msp-300-RD 22430..23125 821..126 3480 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:52:27
Subject Length Description Subject Range Query Range Score Percent Strand
Msp300-RF 2610 CG42768-RF 1526..2328 821..19 4015 100 Minus
Msp300-RB 25760 CG42768-RB 24676..25478 821..19 4015 100 Minus
Msp300-RG 43121 CG42768-RG 1262..1959 821..124 3490 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:52:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5155587..5155850 389..126 1320 100 Minus
2L 23513712 2L 5154997..5155217 821..601 1105 100 Minus
2L 23513712 2L 5155321..5155536 601..386 1080 100 Minus
2L 23513712 2L 5157864..5157981 136..19 560 98.3 Minus
Blast to na_te.dros performed on 2015-02-12 03:52:26 has no hits.

BO18172.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:19:25 Download gff for BO18172.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33715-PB 22432..23235 18..819 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:31:10 Download gff for BO18172.3prime
Subject Subject Range Query Range Percent Splice Strand
Msp-300-RB 24678..25478 19..819 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:00:30 Download gff for BO18172.3prime
Subject Subject Range Query Range Percent Splice Strand
Msp300-RB 24678..25478 19..819 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:00:30 Download gff for BO18172.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 5154999..5155217 601..819 100 -> Minus
2L 5155322..5155534 388..600 100 -> Minus
2L 5155589..5155849 127..387 100 -> Minus
2L 5157874..5157981 19..126 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:31:10 Download gff for BO18172.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5154999..5155217 601..819 100 -> Minus
arm_2L 5155322..5155534 388..600 100 -> Minus
arm_2L 5155589..5155849 127..387 100 -> Minus
arm_2L 5157874..5157981 19..126 100   Minus

BO18172.5prime Sequence

764 bp (707 high quality bases) assembled on 2006-10-13

> BO18172.5prime
GAAGTTATCAGTCGACATGGAGACCAAAGAGAAGGATTTCAAGCGGGCCA
AGACCGTGCGCACCGAATATGTGGACGGTGTGGACGAGGTGCAGCGTTGG
CTGCTCCAGGCAGAGGTGCAGGTGCAGGAGAGAAGCCTCACACCCACACA
GATGAAGGAGCTGCTGCAGCGCATTAACCACGAGATCACCGCCATCTACG
AACGCTTCACCCTGGTCAAGACCAACGGTCAGCTGATCATCGAGAACTGT
CGCAACAGCGAGGAGAAGACGCTGGTGCAGACGACCATCGATCAGTTGGC
CGCATCGCTGGCCCAGGTACGCGGTTGGCTGGATGAGAAGAAGCAGGCGG
TGGGCGATAGTCTGGACGCGTGGACGAGGTTCATGAACCTCTACCAGATC
GTGATGTCGTGGGCATCCGAGAAGCGCAACTTCATTGACCAGACCATCGA
GCTGCGCACCCTGCCCGAGGCACGCAACAAATTGAACGACTATGTGACGT
CTGTGAAGAGTATTAAACCGATTGTGAAGCATCTGAGCGAAATGGACAAG
GAACTGGAGCACATTGGCCAAGTGACGACTGTGGGCGATCTCAAGGACAA
ACTGCAGGAGGCCGAGGATGCGAAGATATCCGTGGAAGCGGTGCTGCTAG
AGAGGAACTCCCTGCTGCAAGAGGCCTGCGAGGAATGGGACCAATGTGAA
CGCAAGATTAAGGATATACGCTCCTGGCACGAAAAGACGAAGCAGGGACT
GGACTCCTCGCAGC

BO18172.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG33715-PB 23235 Msp-300-RB 22011..22759 16..764 3745 100 Plus
CG33715-PD 35124 Msp-300-RD 22011..22759 16..764 3745 100 Plus
CG33715-PE 28821 Msp-300-RE 1..748 17..764 3740 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:52:40
Subject Length Description Subject Range Query Range Score Percent Strand
Msp300-RI 36339 CG42768-RI 23145..23893 16..764 3745 100 Plus
Msp300-RH 37913 CG42768-RH 23145..23893 16..764 3745 100 Plus
Msp300-RG 43121 CG42768-RG 843..1591 16..764 3745 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:52:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5154578..5155217 16..655 3200 100 Plus
2L 23513712 2L 5155321..5155430 655..764 550 100 Plus
Blast to na_te.dros performed on 2015-02-10 20:52:39 has no hits.

BO18172.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:19:26 Download gff for BO18172.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33715-PD 22005..22759 10..764 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:21:57 Download gff for BO18172.5prime
Subject Subject Range Query Range Percent Splice Strand
Msp-300-RG 837..1591 10..764 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:28:58 Download gff for BO18172.5prime
Subject Subject Range Query Range Percent Splice Strand
Msp300-RG 837..1591 10..764 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:28:58 Download gff for BO18172.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5155322..5155430 656..764 100   Plus
2L 5154572..5155217 10..655 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:21:57 Download gff for BO18172.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5154572..5155217 10..655 99 -> Plus
arm_2L 5155322..5155430 656..764 100   Plus

BO18172.complete Sequence

1255 bp assembled on 2006-10-11

GenBank Submission: FJ634339

> BO18172.complete
GAAGTTATCAGTCGACATGGAGACCAAAGAGAAGGATTTCAAGCGGGCCA
AGACCGTGCGCACCGAATATGTGGACGGTGTGGACGAGGTGCAGCGTTGG
CTGCTCCAGGCAGAGGTGCAGGTGCAGGAGAGAAGCCTCACACCCACACA
GATGAAGGAGCTGCTGCAGCGCATTAACCACGAGATCACCGCCATCTACG
AACGCTTCACCCTGGTCAAGACCAACGGTCAGCTGATCATCGAGAACTGT
CGCAACAGCGAGGAGAAGACGCTGGTGCAGACGACCATCGATCAGTTGGC
CGCATCGCTGGCCCAGGTACGCGGTTGGCTGGATGAGAAGAAGCAGGCGG
TGGGCGATAGTCTGGACGCGTGGACGAGGTTCATGAACCTCTACCAGATC
GTGATGTCGTGGGCATCCGAGAAGCGCAACTTCATTGACCAGACCATCGA
GCTGCGCACCCTGCCCGAGGCACGCAACAAATTGAACGACTATGTGACGT
CTGTGAAGAGTATTAAACCGATTGTGAAGCATCTGAGCGAAATGGACAAG
GAACTGGAGCACATTGGCCAAGTGACGACTGTGGGCGATCTCAAGGACAA
ACTGCAGGAGGCCGAGGATGCGAAGATATCCGTGGAAGCGGTGCTGCTAG
AGAGGAACTCCCTGCTGCAAGAGGCCTGCGAGGAATGGGACCAATGTGAA
CGCAAGATTAAGGATATACGCTCCTGGCACGAAAAGACGAAGCAGGGACT
GGACTCCTCGCAGCAGCAGAAGAAACCGCTGCGCGATCAGCTCGGTTTCT
GTGAGAAGACCCTGGCCGATATCAATGTGCAGAAAACGAAACTGAGACTG
TCCATCGAAAAACTGGAGGTTCATTTCCGCAATGGCATGGGCGGTGATCC
GCGCCTGAGCGAGAACGTCGATGATCTGGTGCGCGTGCTCGACGGCCTCG
GCGAATTGGTCAAGGCCAAGTCGCAGAGCCTCGAGCAGACGCTGGCCCAG
ATCGACGTTTACCAACAGCAGATGCAGTCCCTGCGCCAGCGTATCATCCA
GGAGGAGCAACAGCTCCGCCTGGTGATGGCGCCCACGTACTTGCCGCACG
ATCGCGAGCGCGCATTAGCCGAGCAACAGGCATGCCGGGAACGTGTCAAA
AATCTGCATTCGAAAATAACTGCACGTAATGAGCGCATCAAGTTGTTAAT
ACATCGCGGCACGCCGGACGATGCCAAGCTAGAGATTGCAAGCTTTCTAG
ACCAT

BO18172.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:04:40
Subject Length Description Subject Range Query Range Score Percent Strand
Msp300-RB 25149 CG42768-PB 23925..25146 16..1237 6110 100 Plus
Msp300-RF 1224 CG42768-PF 1..1221 17..1237 6105 100 Plus
Msp300-RG 40623 CG42768-PG 1..1116 17..1132 5580 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:04:41
Subject Length Description Subject Range Query Range Score Percent Strand
Msp300-RF 2610 CG42768-RF 1107..2328 16..1237 6110 100 Plus
Msp300-RB 25760 CG42768-RB 24257..25478 16..1237 6110 100 Plus
Msp300-RG 43121 CG42768-RG 843..1959 16..1132 5585 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:04:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5154578..5155217 16..655 3200 100 Plus
2L 23513712 2L 5155587..5155850 867..1130 1320 100 Plus
2L 23513712 2L 5155321..5155536 655..870 1080 100 Plus
2L 23513712 2L 5157864..5157981 1120..1237 560 98.3 Plus
Blast to na_te.dros performed on 2014-11-27 15:04:39 has no hits.

BO18172.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:43 Download gff for BO18172.complete
Subject Subject Range Query Range Percent Splice Strand
Msp-300-RB 23919..25149 10..1238 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:41:01 Download gff for BO18172.complete
Subject Subject Range Query Range Percent Splice Strand
Msp-300-RF 1101..2328 10..1237 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:09 Download gff for BO18172.complete
Subject Subject Range Query Range Percent Splice Strand
Msp-300-RB 24258..25478 17..1239 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:43 Download gff for BO18172.complete
Subject Subject Range Query Range Percent Splice Strand
Msp-300-RB 23919..25146 10..1237 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:59:28 Download gff for BO18172.complete
Subject Subject Range Query Range Percent Splice Strand
Msp300-RB 24258..25478 17..1239 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:59:28 Download gff for BO18172.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5154579..5155217 17..655 100 -> Plus
2L 5155322..5155534 656..868 100 -> Plus
2L 5155589..5155849 869..1129 100 -> Plus
2L 5157874..5157981 1130..1239 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:09 Download gff for BO18172.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5154579..5155217 17..655 100 -> Plus
arm_2L 5155322..5155534 656..868 100 -> Plus
arm_2L 5155589..5155849 869..1129 100 -> Plus
arm_2L 5157874..5157981 1130..1239 98   Plus

BO18172.pep Sequence

Translation from 16 to 1255

> BO18172.pep
METKEKDFKRAKTVRTEYVDGVDEVQRWLLQAEVQVQERSLTPTQMKELL
QRINHEITAIYERFTLVKTNGQLIIENCRNSEEKTLVQTTIDQLAASLAQ
VRGWLDEKKQAVGDSLDAWTRFMNLYQIVMSWASEKRNFIDQTIELRTLP
EARNKLNDYVTSVKSIKPIVKHLSEMDKELEHIGQVTTVGDLKDKLQEAE
DAKISVEAVLLERNSLLQEACEEWDQCERKIKDIRSWHEKTKQGLDSSQQ
QKKPLRDQLGFCEKTLADINVQKTKLRLSIEKLEVHFRNGMGGDPRLSEN
VDDLVRVLDGLGELVKAKSQSLEQTLAQIDVYQQQMQSLRQRIIQEEQQL
RLVMAPTYLPHDRERALAEQQACRERVKNLHSKITARNERIKLLIHRGTP
DDAKLEIASFLDH

BO18172.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:06:55
Subject Length Description Subject Range Query Range Score Percent Strand
Msp300-PF 407 CG42768-PF 1..407 1..407 2062 100 Plus
Msp300-PB 8382 CG42768-PB 7976..8382 1..407 2062 100 Plus
Msp300-PM 6685 CG42768-PM 1..380 1..380 1894 98.4 Plus
Msp300-PE 9606 CG42768-PE 1..380 1..380 1894 98.4 Plus
Msp300-PG 13540 CG42768-PG 1..380 1..380 1894 98.4 Plus