Clone BO18175 Report

Search the DGRC for BO18175

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:181
Well:75
Vector:pDNR-Dual
Associated Gene/Transcriptescl-RA
Protein status:BO18175.pep: validated full length
Sequenced Size:1420

Clone Sequence Records

BO18175.3prime Sequence

773 bp (727 high quality bases) assembled on 2006-10-13

> BO18175.3prime
ATGGTCTAGAAAGCTTGCATTGACGCGATCCCATCGCCACACGGTGCTGT
CGTCGCACACGCAAACTAAAATGGAACCGTCTTTGGAGAAGGAAGTCTGT
CGGATGGTGGAGTTGCTTTTGGGATGAACCAGCTGGCTACACTTTGTTAA
ATTGGGATCATTGCAGTCCAATTCCCAGACAAATGTTGTGCCCAGTTGAT
TGCCCAAGGCCAGAATCTTTTGCCAGGCGTTGAAGGCGAAGCGTACGAAC
CAGATCTCGCACATCTTGTAGTCAAAGTGATGCAGCACCGTGGTGGCCGA
CTCCTGTGGCTTAATCTCATGCCACGATTCTGAAAGTTTGCCCGGCTTCC
AGCAAACAATTGAGTTCTCGCAGGATTTCGAAAAGACAAAGTCGCCGAAC
CACTGAACGCAATCCACATAATTTCGATGTATATCCCTTGTCGAGAAGTC
CGGAAAGTGCTCCTTGATCGTGGGAAACGGACCCGTATTCTTGTTGGGAC
TAAAACCAGAGCTCAGCTCGATGGCCTCTTTTATATCGGGCTTATCCAGT
CGCCAGAGCTTCAGTGAGTGATCCATTCCACTGGACATGATGCGATCACC
GCGCAAATCAAAGTCCACAGACAACACTTCGTCGCGGTGTCCTTCTACGC
CGCCGAAAACCGCCACACACACGTCCGACTGAATGTTCCAAAGGCGCAGG
GAGTGATCCTTGCTGCCGGACAGAAGTAACTGCGGTCTAGTCGGATGAAA
CTTCAGCTCGTTAATGGCGTGCC

BO18175.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG5202-PA 1389 escl-RA 632..1386 773..19 3775 100 Minus
CG31864-PA 372 CG31864-RA 275..372 255..158 490 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:30:03
Subject Length Description Subject Range Query Range Score Percent Strand
escl-RC 1532 CG5202-RC 678..1432 773..19 3775 100 Minus
escl-RA 1809 CG5202-RA 678..1432 773..19 3775 100 Minus
Qtzl-RC 926 CG31864-RC 349..585 255..19 1185 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:29:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11991717..11992471 773..19 3775 100 Minus
2L 23513712 2L 11996146..11996382 255..19 1185 100 Minus
2L 23513712 2L 11827797..11828224 341..768 265 70.8 Plus
Blast to na_te.dros performed on 2015-02-10 17:29:59 has no hits.

BO18175.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:19:28 Download gff for BO18175.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5202-PA 632..1389 18..773 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:41:15 Download gff for BO18175.3prime
Subject Subject Range Query Range Percent Splice Strand
escl-RA 678..1432 19..773 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:57:43 Download gff for BO18175.3prime
Subject Subject Range Query Range Percent Splice Strand
escl-RA 678..1432 19..773 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:57:43 Download gff for BO18175.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 11991717..11992471 19..773 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:41:15 Download gff for BO18175.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11991717..11992471 19..773 100   Minus

BO18175.5prime Sequence

839 bp (758 high quality bases) assembled on 2006-10-13

> BO18175.5prime
GAAGTTATCAGTCGACATGACCGAAACGAATCCCAGTGAAATATCTCCTC
CGAGCGAAGAGCCACCGGCAGAGGACGAATCCACTGACCACTCTCCAGCG
GAGGCAGTGCTGAGCAATAATTCCTCGAGTGTCTGCAATGTTGTGGAGCC
GGATGATGAGCACGAAGTTAATTCCGTGGATCGGGAGGACACCGCCAGTT
TGTTCAGCACTACTACGACCACCACCAGAAGCAAATCGCCAAATACACGA
AAATTGAACCGCCTGTGTCGGCGGATCAAGGCACCCAAAATGGTTCAGCC
CTTGTACAAATATAGCTCCCATGTCCGCGAGGACCACAACCATCAGATCT
TCGGAGTGCAGTTCAATCCGTTCCTGGACAGAGGCCAGCCGCAGGTGTTC
GCCACCGTTGGCAAGGATCGGGTTTCCATTTATGAGTGCGAGAGGAGCAC
CGGACAGGAGTCCTGCGAAGGCATTCGACTGCTGCAAGTCTACGCAGACC
CAGATACCGATGAAAGTTTCTACACATGCGCTTGGTCCTACGACTCTGTG
ACCGGCGATCCTGTGCTTGCCGCGGCTGGTTACCGCGGCGTCATTCGCAT
ATTCAATCCGGTTAAGCACCAGTGCAGCAAAAACTACATTGGTCACGGGC
ACGCCATTAACGAGCTGAAGTTTCATCCGACTAGACCGCAGTTACTTCTG
TCCGGCAGCAAGGATCACTCCCTGCGCCTTTGGAACATTCAGTCGGACGT
GTGTGTGGCGGTTTTCGGCGGCGTAAAAGGACACCGCGACGAAGTGTTGT
CTGTGGACTTTGATTTGCGCGGGGATCGCATCATGTCCA

BO18175.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG5202-PA 1389 escl-RA 1..823 17..839 4065 99.7 Plus
CG5202-PB 552 escl-RB 1..489 17..505 2445 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:29:15
Subject Length Description Subject Range Query Range Score Percent Strand
escl-RC 1532 CG5202-RC 47..869 17..839 4085 99.8 Plus
escl-RA 1809 CG5202-RA 47..869 17..839 4085 99.8 Plus
esc-RA 1704 CG14941-RA 663..862 632..831 190 73.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:29:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11991575..11991908 506..839 1640 99.4 Plus
2L 23513712 2L 11990973..11991271 17..315 1495 100 Plus
2L 23513712 2L 11991328..11991519 314..505 960 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:29:11 has no hits.

BO18175.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:19:29 Download gff for BO18175.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5202-PA 1..822 17..838 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:22:06 Download gff for BO18175.5prime
Subject Subject Range Query Range Percent Splice Strand
escl-RA 42..868 9..838 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:06:48 Download gff for BO18175.5prime
Subject Subject Range Query Range Percent Splice Strand
escl-RA 42..868 9..838 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:06:48 Download gff for BO18175.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 11990968..11991271 9..315 98 -> Plus
2L 11991330..11991519 316..505 100 -> Plus
2L 11991575..11991907 506..838 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:22:06 Download gff for BO18175.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11990968..11991271 9..315 98 -> Plus
arm_2L 11991330..11991519 316..505 100 -> Plus
arm_2L 11991575..11991907 506..838 99   Plus

BO18175.complete Sequence

1420 bp assembled on 2006-10-11

GenBank Submission: FJ634340

> BO18175.complete
GAAGTTATCAGTCGACATGACCGAAACGAATCCCAGTGAAATATCTCCTC
CGAGCGAAGAGCCACCGGCAGAGGACGAATCCACTGACCACTCTCCAGCG
GAGGCAGTGCTGAGCAATAATTCCTCGAGTGTCTGCAATGTTGTGGAGCC
GGATGATGAGCACGAAGTTAATTCCGTGGATCGGGAGGACACCGCCAGTT
TGTTCAGCACTACTACGACCACCACCAGAAGCAAATCGCCAAATACACGA
AAATTGAACCGCCTGTGTCGGCGGATCAAGGCACCCAAAATGGTTCAGCC
CTTGTACAAATATAGCTCCCATGTCCGCGAGGACCACAACCATCAGATCT
TCGGAGTGCAGTTCAATCCGTTCCTGGACAGAGGCCAGCCGCAGGTGTTC
GCCACCGTTGGCAAGGATCGGGTTTCCATTTATGAGTGCGAGAGGAGCAC
CGGACAGGAGTCCTGCGAAGGCATTCGACTGCTGCAAGTCTACGCAGACC
CAGATACCGATGAAAGTTTCTACACATGCGCTTGGTCCTACGACTCTGTG
ACCGGCGATCCTGTGCTTGCCGCGGCTGGTTACCGCGGCGTCATTCGCAT
ATTCAATCCGGTTAAGCACCAGTGCAGCAAAAACTACATTGGTCACGGGC
ACGCCATTAACGAGCTGAAGTTTCATCCGACTAGACCGCAGTTACTTCTG
TCCGGCAGCAAGGATCACTCCCTGCGCCTTTGGAACATTCAGTCGGACGT
GTGTGTGGCGGTTTTCGGCGGCGTAGAAGGACACCGCGACGAAGTGTTGT
CTGTGGACTTTGATTTGCGCGGTGATCGCATCATGTCCAGTGGAATGGAT
CACTCACTGAAGCTCTGGCGACTGGATAAGCCCGATATAAAAGAGGCCAT
CGAGCTGAGCTCTGGTTTTAGTCCCAACAAGAATACGGGTCCGTTTCCCA
CGATCAAGGAGCACTTTCCGGACTTCTCGACAAGGGATATACATCGAAAT
TATGTGGATTGCGTTCAGTGGTTCGGCGACTTTGTCTTTTCGAAATCCTG
CGAGAACTCAATTGTTTGCTGGAAGCCGGGCAAACTTTCAGAATCGTGGC
ATGAGATTAAGCCACAGGAGTCGGCCACCACGGTGCTGCATCACTTTGAC
TACAAGATGTGCGAGATCTGGTTCGTACGCTTCGCCTTCAACGCCTGGCA
AAAGATTCTGGCCTTGGGCAATCAACTGGGCACAACATTTGTCTGGGAAT
TGGACTGCAATGATCCCAATTTAACAAAGTGTAGCCAGCTGGTTCATCCC
AAAAGCAACTCCACCATCCGACAGACTTCCTTCTCCAAAGACGGTTCCAT
TTTAGTTTGCGTGTGCGACGACAGCACCGTGTGGCGATGGGATCGCGTCA
ATGCAAGCTTTCTAGACCAT

BO18175.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:12:27
Subject Length Description Subject Range Query Range Score Percent Strand
escl-RC 1389 CG5202-PC 1..1386 17..1402 6930 100 Plus
escl-RA 1389 CG5202-PA 1..1386 17..1402 6930 100 Plus
Qtzl-RC 372 CG31864-PC 275..372 1166..1263 490 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:12:29
Subject Length Description Subject Range Query Range Score Percent Strand
escl-RC 1532 CG5202-RC 47..1432 17..1402 6930 100 Plus
escl-RA 1809 CG5202-RA 47..1432 17..1402 6930 100 Plus
Qtzl-RC 926 CG31864-RC 349..585 1166..1402 1185 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:12:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 11991575..11992471 506..1402 4485 100 Plus
2L 23513712 2L 11990973..11991271 17..315 1495 100 Plus
2L 23513712 2L 11996146..11996382 1166..1402 1185 100 Plus
2L 23513712 2L 11991328..11991519 314..505 960 100 Plus
2L 23513712 2L 11827797..11828245 1080..632 310 71.3 Minus
Blast to na_te.dros performed on 2014-11-28 00:12:26 has no hits.

BO18175.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:23 Download gff for BO18175.complete
Subject Subject Range Query Range Percent Splice Strand
escl-RA 1..1389 17..1403 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:40:34 Download gff for BO18175.complete
Subject Subject Range Query Range Percent Splice Strand
escl-RA 42..1432 9..1402 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:47:32 Download gff for BO18175.complete
Subject Subject Range Query Range Percent Splice Strand
escl-RA 47..1432 17..1404 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:24 Download gff for BO18175.complete
Subject Subject Range Query Range Percent Splice Strand
escl-RA 42..1432 9..1402 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:16:17 Download gff for BO18175.complete
Subject Subject Range Query Range Percent Splice Strand
escl-RA 47..1432 17..1404 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:16:17 Download gff for BO18175.complete
Subject Subject Range Query Range Percent Splice Strand
2L 11991575..11992471 506..1404 99   Plus
2L 11990973..11991271 17..315 100 -> Plus
2L 11991330..11991519 316..505 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:47:32 Download gff for BO18175.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 11991575..11992471 506..1404 99   Plus
arm_2L 11990973..11991271 17..315 100 -> Plus
arm_2L 11991330..11991519 316..505 100 -> Plus

BO18175.pep Sequence

Translation from 16 to 1420

> BO18175.pep
MTETNPSEISPPSEEPPAEDESTDHSPAEAVLSNNSSSVCNVVEPDDEHE
VNSVDREDTASLFSTTTTTTRSKSPNTRKLNRLCRRIKAPKMVQPLYKYS
SHVREDHNHQIFGVQFNPFLDRGQPQVFATVGKDRVSIYECERSTGQESC
EGIRLLQVYADPDTDESFYTCAWSYDSVTGDPVLAAAGYRGVIRIFNPVK
HQCSKNYIGHGHAINELKFHPTRPQLLLSGSKDHSLRLWNIQSDVCVAVF
GGVEGHRDEVLSVDFDLRGDRIMSSGMDHSLKLWRLDKPDIKEAIELSSG
FSPNKNTGPFPTIKEHFPDFSTRDIHRNYVDCVQWFGDFVFSKSCENSIV
CWKPGKLSESWHEIKPQESATTVLHHFDYKMCEIWFVRFAFNAWQKILAL
GNQLGTTFVWELDCNDPNLTKCSQLVHPKSNSTIRQTSFSKDGSILVCVC
DDSTVWRWDRVNASFLDH

BO18175.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:09:29
Subject Length Description Subject Range Query Range Score Percent Strand
escl-PC 462 CG5202-PC 1..462 1..462 2513 100 Plus
escl-PA 462 CG5202-PA 1..462 1..462 2513 100 Plus
esc-PA 425 CG14941-PA 2..419 35..460 1356 58.4 Plus