Clone Sequence Records
BO18175.3prime Sequence
773 bp (727 high quality bases) assembled on 2006-10-13
> BO18175.3prime
ATGGTCTAGAAAGCTTGCATTGACGCGATCCCATCGCCACACGGTGCTGT
CGTCGCACACGCAAACTAAAATGGAACCGTCTTTGGAGAAGGAAGTCTGT
CGGATGGTGGAGTTGCTTTTGGGATGAACCAGCTGGCTACACTTTGTTAA
ATTGGGATCATTGCAGTCCAATTCCCAGACAAATGTTGTGCCCAGTTGAT
TGCCCAAGGCCAGAATCTTTTGCCAGGCGTTGAAGGCGAAGCGTACGAAC
CAGATCTCGCACATCTTGTAGTCAAAGTGATGCAGCACCGTGGTGGCCGA
CTCCTGTGGCTTAATCTCATGCCACGATTCTGAAAGTTTGCCCGGCTTCC
AGCAAACAATTGAGTTCTCGCAGGATTTCGAAAAGACAAAGTCGCCGAAC
CACTGAACGCAATCCACATAATTTCGATGTATATCCCTTGTCGAGAAGTC
CGGAAAGTGCTCCTTGATCGTGGGAAACGGACCCGTATTCTTGTTGGGAC
TAAAACCAGAGCTCAGCTCGATGGCCTCTTTTATATCGGGCTTATCCAGT
CGCCAGAGCTTCAGTGAGTGATCCATTCCACTGGACATGATGCGATCACC
GCGCAAATCAAAGTCCACAGACAACACTTCGTCGCGGTGTCCTTCTACGC
CGCCGAAAACCGCCACACACACGTCCGACTGAATGTTCCAAAGGCGCAGG
GAGTGATCCTTGCTGCCGGACAGAAGTAACTGCGGTCTAGTCGGATGAAA
CTTCAGCTCGTTAATGGCGTGCC
BO18175.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5202-PA | 1389 | escl-RA | 632..1386 | 773..19 | 3775 | 100 | Minus |
CG31864-PA | 372 | CG31864-RA | 275..372 | 255..158 | 490 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:30:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
escl-RC | 1532 | CG5202-RC | 678..1432 | 773..19 | 3775 | 100 | Minus |
escl-RA | 1809 | CG5202-RA | 678..1432 | 773..19 | 3775 | 100 | Minus |
Qtzl-RC | 926 | CG31864-RC | 349..585 | 255..19 | 1185 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:29:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11991717..11992471 | 773..19 | 3775 | 100 | Minus |
2L | 23513712 | 2L | 11996146..11996382 | 255..19 | 1185 | 100 | Minus |
2L | 23513712 | 2L | 11827797..11828224 | 341..768 | 265 | 70.8 | Plus |
Blast to na_te.dros performed on 2015-02-10 17:29:59 has no hits.
BO18175.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:19:28 Download gff for
BO18175.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5202-PA | 632..1389 | 18..773 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:41:15 Download gff for
BO18175.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
escl-RA | 678..1432 | 19..773 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:57:43 Download gff for
BO18175.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
escl-RA | 678..1432 | 19..773 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:57:43 Download gff for
BO18175.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11991717..11992471 | 19..773 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:41:15 Download gff for
BO18175.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11991717..11992471 | 19..773 | 100 | | Minus |
BO18175.5prime Sequence
839 bp (758 high quality bases) assembled on 2006-10-13
> BO18175.5prime
GAAGTTATCAGTCGACATGACCGAAACGAATCCCAGTGAAATATCTCCTC
CGAGCGAAGAGCCACCGGCAGAGGACGAATCCACTGACCACTCTCCAGCG
GAGGCAGTGCTGAGCAATAATTCCTCGAGTGTCTGCAATGTTGTGGAGCC
GGATGATGAGCACGAAGTTAATTCCGTGGATCGGGAGGACACCGCCAGTT
TGTTCAGCACTACTACGACCACCACCAGAAGCAAATCGCCAAATACACGA
AAATTGAACCGCCTGTGTCGGCGGATCAAGGCACCCAAAATGGTTCAGCC
CTTGTACAAATATAGCTCCCATGTCCGCGAGGACCACAACCATCAGATCT
TCGGAGTGCAGTTCAATCCGTTCCTGGACAGAGGCCAGCCGCAGGTGTTC
GCCACCGTTGGCAAGGATCGGGTTTCCATTTATGAGTGCGAGAGGAGCAC
CGGACAGGAGTCCTGCGAAGGCATTCGACTGCTGCAAGTCTACGCAGACC
CAGATACCGATGAAAGTTTCTACACATGCGCTTGGTCCTACGACTCTGTG
ACCGGCGATCCTGTGCTTGCCGCGGCTGGTTACCGCGGCGTCATTCGCAT
ATTCAATCCGGTTAAGCACCAGTGCAGCAAAAACTACATTGGTCACGGGC
ACGCCATTAACGAGCTGAAGTTTCATCCGACTAGACCGCAGTTACTTCTG
TCCGGCAGCAAGGATCACTCCCTGCGCCTTTGGAACATTCAGTCGGACGT
GTGTGTGGCGGTTTTCGGCGGCGTAAAAGGACACCGCGACGAAGTGTTGT
CTGTGGACTTTGATTTGCGCGGGGATCGCATCATGTCCA
BO18175.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5202-PA | 1389 | escl-RA | 1..823 | 17..839 | 4065 | 99.7 | Plus |
CG5202-PB | 552 | escl-RB | 1..489 | 17..505 | 2445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:29:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
escl-RC | 1532 | CG5202-RC | 47..869 | 17..839 | 4085 | 99.8 | Plus |
escl-RA | 1809 | CG5202-RA | 47..869 | 17..839 | 4085 | 99.8 | Plus |
esc-RA | 1704 | CG14941-RA | 663..862 | 632..831 | 190 | 73.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:29:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11991575..11991908 | 506..839 | 1640 | 99.4 | Plus |
2L | 23513712 | 2L | 11990973..11991271 | 17..315 | 1495 | 100 | Plus |
2L | 23513712 | 2L | 11991328..11991519 | 314..505 | 960 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:29:11 has no hits.
BO18175.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:19:29 Download gff for
BO18175.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5202-PA | 1..822 | 17..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:22:06 Download gff for
BO18175.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
escl-RA | 42..868 | 9..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:06:48 Download gff for
BO18175.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
escl-RA | 42..868 | 9..838 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:06:48 Download gff for
BO18175.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11990968..11991271 | 9..315 | 98 | -> | Plus |
2L | 11991330..11991519 | 316..505 | 100 | -> | Plus |
2L | 11991575..11991907 | 506..838 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:22:06 Download gff for
BO18175.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11990968..11991271 | 9..315 | 98 | -> | Plus |
arm_2L | 11991330..11991519 | 316..505 | 100 | -> | Plus |
arm_2L | 11991575..11991907 | 506..838 | 99 | | Plus |
BO18175.complete Sequence
1420 bp assembled on 2006-10-11
GenBank Submission: FJ634340
> BO18175.complete
GAAGTTATCAGTCGACATGACCGAAACGAATCCCAGTGAAATATCTCCTC
CGAGCGAAGAGCCACCGGCAGAGGACGAATCCACTGACCACTCTCCAGCG
GAGGCAGTGCTGAGCAATAATTCCTCGAGTGTCTGCAATGTTGTGGAGCC
GGATGATGAGCACGAAGTTAATTCCGTGGATCGGGAGGACACCGCCAGTT
TGTTCAGCACTACTACGACCACCACCAGAAGCAAATCGCCAAATACACGA
AAATTGAACCGCCTGTGTCGGCGGATCAAGGCACCCAAAATGGTTCAGCC
CTTGTACAAATATAGCTCCCATGTCCGCGAGGACCACAACCATCAGATCT
TCGGAGTGCAGTTCAATCCGTTCCTGGACAGAGGCCAGCCGCAGGTGTTC
GCCACCGTTGGCAAGGATCGGGTTTCCATTTATGAGTGCGAGAGGAGCAC
CGGACAGGAGTCCTGCGAAGGCATTCGACTGCTGCAAGTCTACGCAGACC
CAGATACCGATGAAAGTTTCTACACATGCGCTTGGTCCTACGACTCTGTG
ACCGGCGATCCTGTGCTTGCCGCGGCTGGTTACCGCGGCGTCATTCGCAT
ATTCAATCCGGTTAAGCACCAGTGCAGCAAAAACTACATTGGTCACGGGC
ACGCCATTAACGAGCTGAAGTTTCATCCGACTAGACCGCAGTTACTTCTG
TCCGGCAGCAAGGATCACTCCCTGCGCCTTTGGAACATTCAGTCGGACGT
GTGTGTGGCGGTTTTCGGCGGCGTAGAAGGACACCGCGACGAAGTGTTGT
CTGTGGACTTTGATTTGCGCGGTGATCGCATCATGTCCAGTGGAATGGAT
CACTCACTGAAGCTCTGGCGACTGGATAAGCCCGATATAAAAGAGGCCAT
CGAGCTGAGCTCTGGTTTTAGTCCCAACAAGAATACGGGTCCGTTTCCCA
CGATCAAGGAGCACTTTCCGGACTTCTCGACAAGGGATATACATCGAAAT
TATGTGGATTGCGTTCAGTGGTTCGGCGACTTTGTCTTTTCGAAATCCTG
CGAGAACTCAATTGTTTGCTGGAAGCCGGGCAAACTTTCAGAATCGTGGC
ATGAGATTAAGCCACAGGAGTCGGCCACCACGGTGCTGCATCACTTTGAC
TACAAGATGTGCGAGATCTGGTTCGTACGCTTCGCCTTCAACGCCTGGCA
AAAGATTCTGGCCTTGGGCAATCAACTGGGCACAACATTTGTCTGGGAAT
TGGACTGCAATGATCCCAATTTAACAAAGTGTAGCCAGCTGGTTCATCCC
AAAAGCAACTCCACCATCCGACAGACTTCCTTCTCCAAAGACGGTTCCAT
TTTAGTTTGCGTGTGCGACGACAGCACCGTGTGGCGATGGGATCGCGTCA
ATGCAAGCTTTCTAGACCAT
BO18175.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:12:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
escl-RC | 1389 | CG5202-PC | 1..1386 | 17..1402 | 6930 | 100 | Plus |
escl-RA | 1389 | CG5202-PA | 1..1386 | 17..1402 | 6930 | 100 | Plus |
Qtzl-RC | 372 | CG31864-PC | 275..372 | 1166..1263 | 490 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:12:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
escl-RC | 1532 | CG5202-RC | 47..1432 | 17..1402 | 6930 | 100 | Plus |
escl-RA | 1809 | CG5202-RA | 47..1432 | 17..1402 | 6930 | 100 | Plus |
Qtzl-RC | 926 | CG31864-RC | 349..585 | 1166..1402 | 1185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:12:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 11991575..11992471 | 506..1402 | 4485 | 100 | Plus |
2L | 23513712 | 2L | 11990973..11991271 | 17..315 | 1495 | 100 | Plus |
2L | 23513712 | 2L | 11996146..11996382 | 1166..1402 | 1185 | 100 | Plus |
2L | 23513712 | 2L | 11991328..11991519 | 314..505 | 960 | 100 | Plus |
2L | 23513712 | 2L | 11827797..11828245 | 1080..632 | 310 | 71.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:12:26 has no hits.
BO18175.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:23 Download gff for
BO18175.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
escl-RA | 1..1389 | 17..1403 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:40:34 Download gff for
BO18175.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
escl-RA | 42..1432 | 9..1402 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:47:32 Download gff for
BO18175.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
escl-RA | 47..1432 | 17..1404 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:24 Download gff for
BO18175.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
escl-RA | 42..1432 | 9..1402 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:16:17 Download gff for
BO18175.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
escl-RA | 47..1432 | 17..1404 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:16:17 Download gff for
BO18175.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 11991575..11992471 | 506..1404 | 99 | | Plus |
2L | 11990973..11991271 | 17..315 | 100 | -> | Plus |
2L | 11991330..11991519 | 316..505 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:47:32 Download gff for
BO18175.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 11991575..11992471 | 506..1404 | 99 | | Plus |
arm_2L | 11990973..11991271 | 17..315 | 100 | -> | Plus |
arm_2L | 11991330..11991519 | 316..505 | 100 | -> | Plus |
BO18175.pep Sequence
Translation from 16 to 1420
> BO18175.pep
MTETNPSEISPPSEEPPAEDESTDHSPAEAVLSNNSSSVCNVVEPDDEHE
VNSVDREDTASLFSTTTTTTRSKSPNTRKLNRLCRRIKAPKMVQPLYKYS
SHVREDHNHQIFGVQFNPFLDRGQPQVFATVGKDRVSIYECERSTGQESC
EGIRLLQVYADPDTDESFYTCAWSYDSVTGDPVLAAAGYRGVIRIFNPVK
HQCSKNYIGHGHAINELKFHPTRPQLLLSGSKDHSLRLWNIQSDVCVAVF
GGVEGHRDEVLSVDFDLRGDRIMSSGMDHSLKLWRLDKPDIKEAIELSSG
FSPNKNTGPFPTIKEHFPDFSTRDIHRNYVDCVQWFGDFVFSKSCENSIV
CWKPGKLSESWHEIKPQESATTVLHHFDYKMCEIWFVRFAFNAWQKILAL
GNQLGTTFVWELDCNDPNLTKCSQLVHPKSNSTIRQTSFSKDGSILVCVC
DDSTVWRWDRVNASFLDH
BO18175.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:09:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
escl-PC | 462 | CG5202-PC | 1..462 | 1..462 | 2513 | 100 | Plus |
escl-PA | 462 | CG5202-PA | 1..462 | 1..462 | 2513 | 100 | Plus |
esc-PA | 425 | CG14941-PA | 2..419 | 35..460 | 1356 | 58.4 | Plus |