Clone BO18176 Report

Search the DGRC for BO18176

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:181
Well:76
Vector:pDNR-Dual
Associated Gene/TranscriptDcp2-RB
Protein status:BO18176.pep: Imported from assembly
Sequenced Size:1726

Clone Sequence Records

BO18176.3prime Sequence

790 bp (725 high quality bases) assembled on 2006-10-13

> BO18176.3prime
ATGGTCTAGAAAGCTTGCGCAAAACACATTTGCTATGAAGTTCTTGGTAA
AGGAGAAATTCGTCCACGAATTCAAATTTGGCGTAAAGTCGATTCCCAGC
TGCTGCTGCTGCTGTTGTTGCTGTTCTAGTTGCAACTGTTGCTGATGGTG
CTGCTGCGGCTGCTGCGACTGTGCCCGCTTCAGAATCCTCAAATTTGTGC
CCGATGCCATGCGCTGCAGCCTGTGCATGTACTGGGCATCCGGAGCTGAT
GTTGTTGCTCCTGTGGCACTGCCTGCTCCAAGGTTAAGCGGCACTGAAGC
AGGTCGTGGTCGTTGTTGCTGCTGCTGCTTCTCTTGTGTTTGCTGCTCGT
TGTTTGGTGTCTTTTGAGCTGCCGCCGCTGCCGATAGCATGGCTATCAAA
TCCATGCCCGTTGTGGGCTGCTGTTGTCCCAGGATTTTGACTGGCTGCTG
TGGATTGTACTGCTTATCACTCTGCGACTTGGTGCGCGATCGTTGCTGCT
GTTGTTGCTGCTGCTTTTGCGCCTTAGCTGCCTTAAGTTGTTGCTGCTTC
TCCTTGCGTATTAAATCGAAGGAGCTGACAATCTTCTCATTGCTTGCCGA
TTGCTGCGCATCGTTCTGACTTTGGCTATGGAACAGTTGACGCTTCGAGG
ATACAGTACCTCCTACGACGGCGCCATTTGACGTCATTGGCGTTGCTATT
GTAGTTGGCGTTGCCTGATTGCTGCCCGCAGCCGCATTTTGCTTATTGCG
TTTCCCATTGCTATTGCATATGTTCATCGAGTTGATAGCA

BO18176.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:07:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG6169-PB 1695 CG6169-RB 925..1692 786..19 3815 99.8 Minus
CG6169-PA 2376 CG6169-RA 1606..2373 786..19 3815 99.8 Minus
CG6169-PD 1695 CG6169-RD 925..1692 786..19 3815 99.8 Minus
CG6169-PC 2325 CG6169-RC 1552..2322 786..19 3760 99.4 Minus
CG9355-PA 2100 dy-RA 299..325 125..99 135 100 Minus
CG10555-PA 2781 CG10555-RA 2363..2389 125..99 135 100 Minus
CG31868-PA 2907 Samuel-RA 1949..1975 125..99 135 100 Minus
CG11641-PA 2985 CG11641-RA 992..1018 125..99 135 100 Minus
CG3696-PB 6456 kis-RB 3539..3565 125..99 135 100 Minus
CG3696-PA 15969 kis-RA 13052..13078 125..99 135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:11:51
Subject Length Description Subject Range Query Range Score Percent Strand
DCP2-RD 2690 CG6169-RD 1471..2242 790..19 3830 99.7 Minus
DCP2-RA 3665 CG6169-RA 2446..3217 790..19 3830 99.7 Minus
DCP2-RB 2850 CG6169-RB 1631..2402 790..19 3830 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:11:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15821448..15822013 19..584 2815 99.8 Plus
3L 28110227 3L 15822071..15822278 583..790 1025 99.5 Plus
Blast to na_te.dros performed 2015-02-10 18:11:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2254..2701 518..76 335 57.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2294..2532 532..299 271 61.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2371..2995 774..137 255 55.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2413..2886 554..88 251 56.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6755..7035 380..107 214 58.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2305..2677 428..77 211 58.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..6937 517..294 208 58.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2576 378..92 197 57.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6719..6996 386..101 192 57.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6449..6956 609..108 190 56.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6746..7098 380..33 183 56.1 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6715..7230 562..68 170 55.6 Minus
roo 9092 roo DM_ROO 9092bp 1082..1164 380..298 162 70.6 Minus
roo 9092 roo DM_ROO 9092bp 1057..1144 387..294 139 67 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1498..1567 366..295 138 69.4 Minus
roo 9092 roo DM_ROO 9092bp 1045..1164 367..244 123 58.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1522..1578 364..306 118 71.2 Minus
gypsy8 4955 gypsy8 GYPSY8 4955bp 1736..1773 350..313 109 76.3 Minus

BO18176.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:19:30 Download gff for BO18176.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6169-PD 922..1695 15..789 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:48:33 Download gff for BO18176.3prime
Subject Subject Range Query Range Percent Splice Strand
Dcp2-RB 1632..2410 10..789 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:16:03 Download gff for BO18176.3prime
Subject Subject Range Query Range Percent Splice Strand
DCP2-RB 1632..2410 10..789 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:16:03 Download gff for BO18176.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 15821440..15822011 10..582 99 <- Plus
3L 15822071..15822277 583..789 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:48:33 Download gff for BO18176.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15814540..15815111 10..582 99 <- Plus
arm_3L 15815171..15815377 583..789 99   Plus

BO18176.5prime Sequence

786 bp (745 high quality bases) assembled on 2006-10-13

> BO18176.5prime
GAAGTTATCAGTCGACATGGAGCTAAACAATCTAATACGTATGTGTTTCC
AAATCGAACTGGCCCATTGGTTCTATTTGGATTTCTTTTGTGCCCCCGAA
TCTGGCGAGGATGGCGAGACCCCGAAGTGCGTGCAACGAAAGCTGCCATC
GGTGGGCATCAAGCAGTTTGCCATGCAGTTGTTCCAACACATTCCCTTCC
TGAACAAACATTTTGGCACCGTGGATCAAATCCTGGACGAGTGGAAGAAC
TACAAGCTATCGGTGCCCACTTATGGCGCTATTCTGGTGTCCGAGGATCA
CAATCACTGCTTGCTAGTGCAGTCCTACTTCGCGCGCAACTCCTGGGGAT
TTCCCAAGGGCAAGATCAATGAGAACGAAGACCCAGCCCATTGTGCAGCG
AGAGAGGTTTATGAGGAGACCGGGTTCGATATCACGGACCTAATCGATGC
CAACGACTACATCGAGGCGTTCATCAACTACCAGTACACGCGGCTGTACG
TGGTGCGAAACATACCGATGGACACGCAGTTCGCGCCCCGCACTCGCAAC
GAGATCAAGTGCTGCGACTGGTTCCGTATCGATGCGCTGCCGGTGAACAA
GAACGATGCCATATCAAAGGCCAAGTTGGGCAAGACCTCCAACTCCTTCT
TCATGATTATGCCGTTTGTGAAGCGCCTGAAGAAGTGGGTGAACGATCGG
AAGGCTGGAATCGAGCCGCGTCGCCGCAAATTCTCTGGTCAGCAATCGCC
AAAAGCGGGCCTCGCCACCAATATGAACGGAAATTG

BO18176.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:07:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG6169-PA 2376 CG6169-RA 679..1451 14..786 3765 99.6 Plus
CG6169-PB 1695 CG6169-RB 1..770 17..786 3750 99.6 Plus
CG6169-PD 1695 CG6169-RD 1..770 17..786 3750 99.6 Plus
CG6169-PC 2325 CG6169-RC 586..979 14..407 1945 99.7 Plus
CG6169-PC 2325 CG6169-RC 1018..1397 407..786 1825 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:12:02
Subject Length Description Subject Range Query Range Score Percent Strand
DCP2-RE 5934 CG6169-RE 1523..2295 14..786 3805 99.6 Plus
DCP2-RD 2690 CG6169-RD 548..1320 14..786 3805 99.6 Plus
DCP2-RA 3665 CG6169-RA 1523..2295 14..786 3805 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:11:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15822429..15822810 786..405 1835 98.7 Minus
3L 28110227 3L 15822962..15823185 407..184 1090 99.1 Minus
3L 28110227 3L 15823247..15823420 187..14 870 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:11:59 has no hits.

BO18176.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:19:30 Download gff for BO18176.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6169-PA 675..1451 8..786 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 06:48:34 Download gff for BO18176.5prime
Subject Subject Range Query Range Percent Splice Strand
Dcp2-RA 1519..2295 8..786 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:17:02 Download gff for BO18176.5prime
Subject Subject Range Query Range Percent Splice Strand
DCP2-RA 1519..2295 8..786 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:17:02 Download gff for BO18176.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 15822429..15822808 407..786 99 <- Minus
3L 15822963..15823181 188..406 99 <- Minus
3L 15823247..15823424 8..187 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 06:48:34 Download gff for BO18176.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15815529..15815908 407..786 99 <- Minus
arm_3L 15816063..15816281 188..406 99 <- Minus
arm_3L 15816347..15816524 8..187 98   Minus

BO18176.complete Sequence

1726 bp assembled on 2008-11-10

GenBank Submission: KX795153

> BO18176.complete
GAAGTTATCAGTCGACATGGAGCTAAACAATCTAATACGTATGTGTTTCC
AAATCGAACTGGCCCATTGGTTCTATTTGGATTTCTTTTGTGCCCCCGAA
TCTGGCGAGGATGGCGAGACCCCGAAGTGCGTGCAACGAAAGCTGCCATC
GGTGGGCATCAAGCAGTTTGCCATGCAGTTGTTCCAACACATTCCCTTCC
TGAACAAACATTTTGGCACCGTGGATCAAATCCTGGACGAGTGGAAGAAC
TACAAGCTATCGGTGCCCACTTATGGCGCTATTCTGGTGTCCGAGGATCA
CAATCACTGCTTGCTAGTGCAGTCCTACTTCGCGCGCAACTCCTGGGGAT
TTCCCAAGGGCAAGATCAATGAGAACGAAGACCCAGCCCATTGTGCAACG
AGAGAGGTTTATGAGGAGACCGGGTTCGATATCACGGACCTAATCGATGC
CAACGACTACATCGAGGCGTTCATCAACTACCAGTACACGCGGCTGTACG
TGGTGCGAAACATACCGATGGACACGCAGTTCGCGCCCCGCACTCGCAAC
GAGATCAAGTGCTGCGACTGGTTCCGTATCGATGCGCTGCCGGTGAACAA
GAACGATGCCATATCAAAGGCCAAGTTGGGCAAGACCTCCAACTCCTTCT
TCATGATTATGCCGTTTGTGAAGCGCCTGAAGAAGTGGGTGAACGATCGG
AAGGCTGGAATCGAGCCGCGTCGCCGCAAATTCTCTGGTCAGCAATCGCC
AAAAGCGGCCTCGCCCACCAATATGAACGGAAATTGCAAGAAGGACGTCA
CAGGAGTGCGAAATGAATCGCAACGACAGAGGCACAAGTCCATGGGCGAC
TTGGATGGCGTCAAATTGAATAATCTCAATGGCAAGGGGACCGTTGGAAC
GGGAGCGGGATCGGCAGCTTCCGCCTCCGCCACCGCTGCCATCAACTCGA
TGAACATATGCAATAGCAATGGGAAACGCAATAAGCAAAATGCGGCTGCG
GGCAGCAATCAGGCAACGCCAACTACAATAGCAACGCCAATGACGTCAAA
TGGCGCCGTCGTAGGAGGTACTGTATCCTCGAAGCGTCAACTGTTCCATA
GCCAAAGTCAGAACGATGCGCAGCAATCGGCAAGCAATGAGAAGATTGTC
AGCTCCTTCGATTTAATACGCAAGGAGAAGCAGCAACAACTTAAGGCAGC
TAAGGCGCAAAAGCAGCAGCAACAACAGCAGCAACGATCGCGCACCAAGT
CGCAGAGTGATAAGCAGTACAATCCACAGCAGCCAGTCAAAATCCTGGGA
CAACAGCAGCCCACAACGGGCATGGATTTGATAGCCATGCTATCGGCAGC
GGCGGCAGCTCAAAAGACACCAAACAACGAGCAGCAAACACAAGAGAAGC
AGCAGCAGCAACAACGACCACGACCTGCTTCAGTGTCGCTTAACCTTGGA
GCAGGCAGTGCCACAGGAGCAACAACATCAGCTCCGGATGCCCAGTACAT
GCACAGGCTGCAGCGCATGGCATCGGGCACAAATTTGAGGATTCTGAAGC
GGGCACAGTCGCAGCAGCCGCAGCAGCACCATCAGCAACAGTTGCAACTA
GAACAGCAACAACAGCAGCAGCAGCAGCTGGGAATCGACTTTACGCCAAA
TTTGAATTCGTGGACGAATTTCTCCTTTACCAAGAACTTCATAGCAAATG
TGTTTTGCGCAAGCTTTCTAGACCAT

BO18176.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:32:38
Subject Length Description Subject Range Query Range Score Percent Strand
DCP2-RA 2376 CG6169-PA 679..2373 14..1708 8475 100 Plus
DCP2-RD 1695 CG6169-PD 1..1692 17..1708 8460 100 Plus
DCP2-RB 1695 CG6169-PB 1..1692 17..1708 8460 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:32:40
Subject Length Description Subject Range Query Range Score Percent Strand
DCP2-RD 2690 CG6169-RD 548..2242 14..1708 8475 100 Plus
DCP2-RA 3665 CG6169-RA 1523..3217 14..1708 8475 100 Plus
DCP2-RB 2850 CG6169-RB 708..2402 14..1708 8475 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:32:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15822071..15822810 1144..405 3700 100 Minus
3L 28110227 3L 15821448..15822013 1708..1143 2830 100 Minus
3L 28110227 3L 15822962..15823185 407..184 1105 99.6 Minus
3L 28110227 3L 15823247..15823420 187..14 870 100 Minus
Blast to na_te.dros performed 2014-11-27 13:32:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2254..2701 1209..1651 326 57.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2294..2532 1195..1428 271 61.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2413..2886 1173..1639 251 56.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6755..7035 1347..1620 214 58.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..6941 1210..1437 210 58.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2460..2587 1544..1668 209 64.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2305..2677 1299..1650 204 58 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6719..6996 1341..1626 183 56.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6449..6956 1118..1619 181 56.4 Plus
roo 9092 roo DM_ROO 9092bp 1082..1164 1347..1429 162 70.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6715..7230 1165..1659 161 55.2 Plus
roo 9092 roo DM_ROO 9092bp 1057..1144 1340..1433 139 67 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1498..1567 1361..1432 138 69.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1522..1578 1363..1421 118 71.2 Plus
roo 9092 roo DM_ROO 9092bp 1045..1164 1360..1483 114 58.1 Plus

BO18176.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:17:31 Download gff for BO18176.complete
Subject Subject Range Query Range Percent Splice Strand
Dcp2-RD 603..2309 8..1717 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:58:04 Download gff for BO18176.complete
Subject Subject Range Query Range Percent Splice Strand
Dcp2-RB 711..2402 17..1710 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:26:58 Download gff for BO18176.complete
Subject Subject Range Query Range Percent Splice Strand
Dcp2-RD 610..2301 17..1710 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:20:54 Download gff for BO18176.complete
Subject Subject Range Query Range Percent Splice Strand
DCP2-RB 711..2402 17..1710 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:20:54 Download gff for BO18176.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15821446..15822011 1145..1710 99 <- Minus
3L 15822071..15822808 407..1144 100 <- Minus
3L 15822963..15823181 188..406 100 <- Minus
3L 15823247..15823417 17..187 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:58:04 Download gff for BO18176.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15814546..15815111 1145..1710 99 <- Minus
arm_3L 15815171..15815908 407..1144 100 <- Minus
arm_3L 15816063..15816281 188..406 100 <- Minus
arm_3L 15816347..15816517 17..187 100   Minus

BO18176.pep Sequence

Translation from 16 to 1726

> BO18176.pep
MELNNLIRMCFQIELAHWFYLDFFCAPESGEDGETPKCVQRKLPSVGIKQ
FAMQLFQHIPFLNKHFGTVDQILDEWKNYKLSVPTYGAILVSEDHNHCLL
VQSYFARNSWGFPKGKINENEDPAHCATREVYEETGFDITDLIDANDYIE
AFINYQYTRLYVVRNIPMDTQFAPRTRNEIKCCDWFRIDALPVNKNDAIS
KAKLGKTSNSFFMIMPFVKRLKKWVNDRKAGIEPRRRKFSGQQSPKAASP
TNMNGNCKKDVTGVRNESQRQRHKSMGDLDGVKLNNLNGKGTVGTGAGSA
ASASATAAINSMNICNSNGKRNKQNAAAGSNQATPTTIATPMTSNGAVVG
GTVSSKRQLFHSQSQNDAQQSASNEKIVSSFDLIRKEKQQQLKAAKAQKQ
QQQQQQRSRTKSQSDKQYNPQQPVKILGQQQPTTGMDLIAMLSAAAAAQK
TPNNEQQTQEKQQQQQRPRPASVSLNLGAGSATGATTSAPDAQYMHRLQR
MASGTNLRILKRAQSQQPQQHHQQQLQLEQQQQQQQQLGIDFTPNLNSWT
NFSFTKNFIANVFCASFLDH

BO18176.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:06:59
Subject Length Description Subject Range Query Range Score Percent Strand
DCP2-PD 564 CG6169-PD 1..564 1..564 2950 100 Plus
DCP2-PA 791 CG6169-PA 228..791 1..564 2950 100 Plus
DCP2-PB 564 CG6169-PB 1..564 1..564 2950 100 Plus
DCP2-PE 792 CG6169-PE 228..792 1..564 2938 99.8 Plus
Smr-PF 3601 CG4013-PF 9..238 292..537 204 27.5 Plus