Clone Sequence Records
BO18186.3prime Sequence
722 bp (650 high quality bases) assembled on 2006-10-13
> BO18186.3prime
ATGGTCTAGAAAGCTTGCGGCCACCACAATGTCCTGGCTGTTCTCATCGC
TCTCCAGCTCGTCGCCCATCTCCAGTTCGTCCTGCTTGCTGCAGTCGTCG
TCCTCCTCCTCCAGACCCTTGCCCTGATCGATGGCCCCGGCATCCCGGAG
GCATGCCGATTCCAGGTGCTTGTTGAGGTACGATTTGAGGGCGAAGGTCT
TGTTGCAGCGATGGCACTTGAAGTTCTTATCGCCCGAATGGGTCTGCATG
TGGGCCCGCAGATTGGAGCGGTCGGCAAAGGCTTTGCCGCAATGGACACA
GGCGTAGGGCTTCTCGCCGGTGTGGGACCGAAGGTGTCCCTGGAGTAGCC
AGGGTCTGGAGAAGAGCTTGCCGCAGATGTCGCAGCTGTGCGAGAGCTTG
TGCGTGAGCAAGTGCATCGCCAGGGCGGGCATGGAAACATAGGCCTTGCC
GCAGGTGTTGCACTTCTTGGCCGACTGTGAGTCCAGCGAGCGATGGGTCT
GCTTGTGGCGCGAGAGGTTCGATGATGTGGCATACTGTTTGCCACACTCG
CAGCACTTGTAGCAGCCCCTCTTCCGCTTGGCGTAGTTCTCCCCGTTGCC
GGAGGAGCTGTGTCCCAGGCTGGCTGCCGGATTCTCTGGCGGCTCCGATG
GCGGACCACCTCCTGACGAGGCATTGCTCTGGGCACTCTTGGGACGCGGC
TGCATCGGTTCCTGCCTGTCCT
BO18186.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:08:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12605-PB | 1860 | CG12605-RB | 1154..1857 | 722..19 | 3520 | 100 | Minus |
| CG12605-PC | 1425 | CG12605-RC | 719..1422 | 722..19 | 3520 | 100 | Minus |
| CG12605-PA | 1860 | CG12605-RA | 1154..1857 | 722..19 | 3520 | 100 | Minus |
| CG1130-PA | 1962 | scrt-RA | 1404..1628 | 556..332 | 550 | 89.7 | Minus |
| CG1130-PA | 1962 | scrt-RA | 1669..1811 | 291..149 | 190 | 85.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:39:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12605-RE | 2770 | CG12605-RE | 1928..2631 | 722..19 | 3520 | 100 | Minus |
| CG12605-RD | 7025 | CG12605-RD | 2043..2746 | 722..19 | 3520 | 100 | Minus |
| CG12605-RA | 4340 | CG12605-RA | 1962..2665 | 722..19 | 3520 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:39:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3958530..3959233 | 19..722 | 3520 | 100 | Plus |
| 3L | 28110227 | 3L | 3987495..3987907 | 561..149 | 1225 | 86.4 | Minus |
| 3L | 28110227 | 3L | 584701..584843 | 235..377 | 205 | 76.2 | Plus |
| 2L | 23513712 | 2L | 15477110..15477181 | 308..379 | 180 | 83.3 | Plus |
Blast to na_te.dros performed 2015-02-13 13:39:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G5 | 4856 | G5 G5_DM 4856bp | 2449..2529 | 288..207 | 110 | 61 | Minus |
BO18186.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:19:38 Download gff for
BO18186.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12605-PA | 1154..1860 | 18..722 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:46:35 Download gff for
BO18186.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12605-RA | 1962..2665 | 19..722 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:40:29 Download gff for
BO18186.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12605-RA | 1962..2665 | 19..722 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:40:29 Download gff for
BO18186.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3958530..3959233 | 19..722 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:46:35 Download gff for
BO18186.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3958530..3959233 | 19..722 | 100 | | Plus |
BO18186.5prime Sequence
832 bp (757 high quality bases) assembled on 2006-10-13
> BO18186.5prime
GAAGTTATCAGTCGACATGTCCGTGGACTTTATACTGCCCAATCGCAATA
AGATCCAAACGATTGCCTATGCGAGTGCCAGCAAGAAGTATGTGCCCGGT
GGATCGGGATCCACCCTGAGCTCCGGATCGGTATCGGCATCGGGTGCCGA
CTTGCAGAGCTGGCGACGACCCAAGCCCAGGACCTCCGGAAAGGTGAAGT
TCGATGATAAATCCCCGCTGACTGCCAGTTCGGTGCTAAAAAATGCCAAT
GGAAATGGCCTGGGAACTGGAGGCAAGTCACCTCTCAAATCGCTGGCCAA
AAGGAACTCGCGTTCAATTCTCAAGCGGGAGATCATCGATCTGGACGACG
AGGATGGCGAGGAGCAGGAGGATCAGCTCTGCGAACATCTGGAATGGTCC
GCCGCCCAATCTCTGGTCCAAATGAACTCCTCCAAGCAGGAAAAGCAACG
GCGAGCAGGAACTACAGGATCTCCTGCAACTGTGGCAGCGCCAGTCTCCG
CCTCAGTGTCGCTGCGCCGTCCAGTGGGCAGAGCTCCGGCGGAGGATGGC
AAGGTGATTTTCTATGCCCCGCCCGCCAGCGCCAGTGGATCTCCGCGTCA
GCCGGAGCCGGTGGCCTTGAAGAGGGAGCGCGAGCGGGACAAGGAGCGCG
AGAGGGAAAAAGAACGCGAGCGGGACCGCATGCGGGAACAACAATTGGTC
GCGGCGACGGCAGCGGCATCGATTTACCGGGGTCGCAGCGTGGAGGAAAC
GGAAGCGGCCCACGATCTGCTCTCCCTGTCACAGAGTCTGCCGCCCCTGA
TCCCGCCATGCGTGGTCCACATCATGAAGCAG
BO18186.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:09:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12605-PB | 1860 | CG12605-RB | 1..816 | 17..832 | 4030 | 99.7 | Plus |
| CG12605-PA | 1860 | CG12605-RA | 1..816 | 17..832 | 4030 | 99.7 | Plus |
| CG12605-PC | 1425 | CG12605-RC | 56..381 | 507..832 | 1580 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:46:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12605-RE | 2770 | CG12605-RE | 775..1590 | 17..832 | 4050 | 99.8 | Plus |
| CG12605-RD | 7025 | CG12605-RD | 890..1705 | 17..832 | 4050 | 99.8 | Plus |
| CG12605-RA | 4340 | CG12605-RA | 809..1624 | 17..832 | 4050 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:46:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3961572..3962061 | 506..17 | 2450 | 100 | Minus |
| 3L | 28110227 | 3L | 3959571..3959899 | 832..504 | 1615 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:46:11 has no hits.
BO18186.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:19:38 Download gff for
BO18186.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12605-PA | 1..816 | 17..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-27 02:57:21 Download gff for
BO18186.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12605-RA | 795..1624 | 4..832 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:53:04 Download gff for
BO18186.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12605-RA | 795..1624 | 4..832 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:53:04 Download gff for
BO18186.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3959571..3959896 | 507..832 | 99 | <- | Minus |
| 3L | 3961572..3962075 | 4..506 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-27 02:57:21 Download gff for
BO18186.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3959571..3959896 | 507..832 | 99 | <- | Minus |
| arm_3L | 3961572..3962075 | 4..506 | 99 | | Minus |
BO18186.complete Sequence
1891 bp assembled on 2010-05-05
GenBank Submission: KX795259
> BO18186.complete
GAAGTTATCAGTCGACATGTCCGTGGACTTTATACTGCCCAATCGCAATA
AGATCCAAACGATTGCCTATGCGAGTGCCAGCAAGAAGTATGTGCCCGGT
GGATCGGGATCCACCCTGAGCTCCGGATCGGTATCGGCATCGGGTGCCGA
CTTGCAGAGCTGGCGACGACCCAAGCCCAGGACCTCCGGAAAGGTGAAGT
TCGATGATAAATCCCCGCTGACTGCCAGTTCGGTGCTAAAAAATGCCAAT
GGAAATGGCCTGGGAACTGGAGGCAAGTCACCTCTCAAATCGCTGGCCAA
AAGGAACTCGCGTTCAATTCTCAAGCGGGAGATCATCGATCTGGACGACG
AGGATGGCGAGGAGCAGGAGGATCAGCTCTGCGAACATCTGGAATGGTCC
GCCGCCCAATCTCTGGTCCAAATGAACTCCTCCAAGCAGGAAAAGCAACG
GCGAGCAGGAACTACAGGATCTCCTGCAACTGTGGCAGCGCCAGTCTCCG
CCTCAGTGTCGCTGCGCCGTCCAGTGGGCAGAGCTCCGGCGGAGGATGGC
AAGGTGATTTTCTATGCCCCGCCCGCCAGCGCCAGTGGATCTCCGCGTCA
GCCGGAGCCGGTGGCCTTGAAGAGGGAGCGCGAGCGGGACAAGGAGCGCG
AGAGGGAAAAAGAACGCGAGCGGGACCGCATGCGGGAACAACAATTGGTC
GCGGCGACGGCAGCGGCATCGATTTACCGGGGTCGCAGCGTGGAGGAAAC
GGAAGCGGCCCACGATCTGCTCTCCCTGTCACAGAGTCTGCCGCCCCTGA
TCCCGCCATGCGTGGTCACCATCATGAAGCAGGAGCAGGAGCAACTGCGC
TCCCCGGAAATCCAGGAGATATCGAACAGCGCTTCCAGCCGATCGCCCCA
GTCGACCATCCGGTTCATTGGCAGCAGCTCATACGACCTGATGGGTGGCT
CCTCGGAGGGGGCCAACAATTGCTCGCCTCTGACGCCGCCGAACTCGGAC
CACAGCTCCGACGTGGATATCGACATGTCTTCCTCCTCCGAATCAGGTCT
GCAGCAGTGGGGCAAGCCCAATCCGCAGCAAAACCAGCAGCGTGCCTCGG
CCCTCAAGATGTGCCTCAACATGCTGGATGGCAGGACCAAGGCGAGCAAG
GCGGCTGCTGTGACCAAGCAGGACAGGCAGGAACCGATGCAGCCGCGTCC
CAAGAGTGCCCAGAGCAATGCCTCGTCAGGAGGTGGTCCGCCATCGGAGC
CGCCAGAGAATCCGGCAGCCAGCCTGGGACACAGCTCCTCCGGCAACGGG
GAGAACTACGCCAAGCGGAAGAGGGGCTGCTACAAGTGCTGCGAGTGTGG
CAAACAGTATGCCACATCATCGAACCTCTCGCGCCACAAGCAGACCCATC
GCTCGCTGGACTCACAGTCGGCCAAGAAGTGCAACACCTGCGGCAAGGCC
TATGTTTCCATGCCCGCCCTGGCGATGCACTTGCTCACGCACAAGCTCTC
GCACAGCTGCGACATCTGCGGCAAGCTCTTCTCCAGACCCTGGCTACTCC
AGGGACACCTTCGGTCCCACACCGGCGAGAAGCCCTACGCCTGTGTCCAT
TGCGGCAAAGCCTTTGCCGACCGCTCCAATCTGCGGGCCCACATGCAGAC
CCATTCGGGCGATAAGAACTTCAAGTGCCATCGCTGCAACAAGACCTTCG
CCCTCAAATCGTACCTCAACAAGCACCTGGAATCGGCATGCCTCCGGGAT
GCCGGGGCCATCGATCAGGGCAAGGGTCTGGAGGAGGAGGACGACGACTG
CAGCAAGCAGGACGAACTGGAGATGGGCGACGAGCTGGAGAGCGATGAGA
ACAGCCAGGACATTGTGGTGGCCGCAAGCTTTCTAGACCAT
BO18186.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:31:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12605-RE | 1860 | CG12605-PE | 1..1857 | 17..1873 | 9285 | 100 | Plus |
| CG12605-RD | 1860 | CG12605-PD | 1..1857 | 17..1873 | 9285 | 100 | Plus |
| CG12605-RA | 1860 | CG12605-PA | 1..1857 | 17..1873 | 9285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:31:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12605-RE | 2770 | CG12605-RE | 775..2631 | 17..1873 | 9285 | 100 | Plus |
| CG12605-RD | 7025 | CG12605-RD | 890..2746 | 17..1873 | 9285 | 100 | Plus |
| CG12605-RA | 4340 | CG12605-RA | 809..2665 | 17..1873 | 9285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:31:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3958530..3959899 | 1873..504 | 6850 | 100 | Minus |
| 3L | 28110227 | 3L | 3961572..3962061 | 506..17 | 2450 | 100 | Minus |
| 3L | 28110227 | 3L | 3987495..3987907 | 1331..1743 | 1225 | 86.4 | Plus |
| 3L | 28110227 | 3L | 584701..584843 | 1657..1515 | 205 | 76.2 | Minus |
Blast to na_te.dros performed 2014-11-28 02:31:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dsil\Loa | 7779 | Dsil\Loa DSV28T24 7779bp AKA(S39346) Derived from X60177 (Rel. 37, Last updated, Version 8). | 3963..4016 | 1044..992 | 114 | 70.4 | Minus |
BO18186.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-05 18:40:12 Download gff for
BO18186.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12605-RA | 809..2665 | 17..1875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:21:31 Download gff for
BO18186.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12605-RA | 809..2665 | 17..1875 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:31:03 Download gff for
BO18186.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12605-RA | 809..2665 | 17..1875 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:31:03 Download gff for
BO18186.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3958528..3959896 | 507..1875 | 99 | <- | Minus |
| 3L | 3961572..3962061 | 17..506 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:21:31 Download gff for
BO18186.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3958528..3959896 | 507..1875 | 99 | <- | Minus |
| arm_3L | 3961572..3962061 | 17..506 | 100 | | Minus |
BO18186.pep Sequence
Translation from 16 to 1891
> BO18186.pep
MSVDFILPNRNKIQTIAYASASKKYVPGGSGSTLSSGSVSASGADLQSWR
RPKPRTSGKVKFDDKSPLTASSVLKNANGNGLGTGGKSPLKSLAKRNSRS
ILKREIIDLDDEDGEEQEDQLCEHLEWSAAQSLVQMNSSKQEKQRRAGTT
GSPATVAAPVSASVSLRRPVGRAPAEDGKVIFYAPPASASGSPRQPEPVA
LKRERERDKEREREKERERDRMREQQLVAATAAASIYRGRSVEETEAAHD
LLSLSQSLPPLIPPCVVTIMKQEQEQLRSPEIQEISNSASSRSPQSTIRF
IGSSSYDLMGGSSEGANNCSPLTPPNSDHSSDVDIDMSSSSESGLQQWGK
PNPQQNQQRASALKMCLNMLDGRTKASKAAAVTKQDRQEPMQPRPKSAQS
NASSGGGPPSEPPENPAASLGHSSSGNGENYAKRKRGCYKCCECGKQYAT
SSNLSRHKQTHRSLDSQSAKKCNTCGKAYVSMPALAMHLLTHKLSHSCDI
CGKLFSRPWLLQGHLRSHTGEKPYACVHCGKAFADRSNLRAHMQTHSGDK
NFKCHRCNKTFALKSYLNKHLESACLRDAGAIDQGKGLEEEDDDCSKQDE
LEMGDELESDENSQDIVVAASFLDH
BO18186.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:08:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12605-PE | 619 | CG12605-PE | 1..619 | 1..619 | 3217 | 100 | Plus |
| CG12605-PD | 619 | CG12605-PD | 1..619 | 1..619 | 3217 | 100 | Plus |
| CG12605-PA | 619 | CG12605-PA | 1..619 | 1..619 | 3217 | 100 | Plus |
| CG12605-PB | 619 | CG12605-PB | 1..619 | 1..619 | 3217 | 100 | Plus |
| CG12605-PC | 474 | CG12605-PC | 19..474 | 164..619 | 2396 | 99.8 | Plus |
