Clone Sequence Records
BO18195.3prime Sequence
777 bp (735 high quality bases) assembled on 2006-10-13
> BO18195.3prime
ATGGTCTAGAAAGCTTGCGCAGCCCGCCGCATGCGACGCCTCTGCCCACG
GCTGTAGTCCGTGCAACGCAGCCAGCGGTGCCCCGTTCACGCCCCCCTGG
GAACCCAGGGGTGCCGAAGGAGGCGCGAATCCCTTGCTGATGGCCTCCGC
CTGGAGGGACAGCATCAGTCTGTTCGCCGCCTGCCGCTCCGCCTCGCGCT
CCTCGGCCGTCTGTCGTCTCCACTTGGTGCGTCGGTTCTGGAACCACGTC
TTCACCTGGGCATCGGTCATCTTCAGTCCGCGGGCCAGTGCCGCTCGCTC
CGCGGATGCCAGATACTTTTGCTTGTGGAAGCGCTTCTCCAACTCGGCCA
CCTGGATGCGCGTGAAGGATGTGCGTGGCTTTTTCCTCTTCGGCGGCGTG
CGATTCTGGTAGGGATGTCCGATCCGTCGGGCGATCGGAAAGGCAGCTGC
CAACCGATCCTTGACCGCCTGATGTGCCAGCGCCGCGTGATGCAGTGGCG
GTAGTGCCCAGGTGAGCGGCGTTCTCTGGGGCGGTACACGTAGCACATGA
CCGCCGGCCGCTGAGGGATAGAGATGCGGATACGAGTATAGTGCTGCGGC
GCTTCCGTATGTCGAGTTGGCGATGCTGGTGGCCAGCTTATAGGCCAGGT
CGTGGTCCTCCTGCTGCAGTAGCTCCTTCTCCTCGCCCTTTTCGCCGCTG
TTGTTGTTGTTGCTGCTGGAGCCCGGACTGCTGCTGAGCAGGTGGTTGTT
GTTGTTGTGGTGGTGGTGACTCGTCTC
BO18195.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7937-PA | 1020 | C15-RA | 259..1017 | 777..19 | 3795 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:49:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| C15-RA | 1856 | CG7937-RA | 531..1289 | 777..19 | 3795 | 100 | Minus |
| HHEX-RA | 1267 | CG7056-RA | 922..996 | 288..214 | 180 | 82.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:49:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21502339..21502669 | 777..447 | 1655 | 100 | Minus |
| 3R | 32079331 | 3R | 21507128..21507359 | 449..218 | 1160 | 100 | Minus |
| 3R | 32079331 | 3R | 21512047..21512247 | 219..19 | 1005 | 100 | Minus |
| 3R | 32079331 | 3R | 21077133..21077207 | 214..288 | 180 | 82.7 | Plus |
Blast to na_te.dros performed on 2015-02-08 11:49:37 has no hits.
BO18195.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:19:47 Download gff for
BO18195.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7937-PA | 259..1020 | 15..777 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:37:13 Download gff for
BO18195.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| C15-RA | 531..1292 | 15..777 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:42:30 Download gff for
BO18195.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| C15-RA | 531..1292 | 15..777 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:42:30 Download gff for
BO18195.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21502339..21502669 | 447..777 | 100 | -> | Minus |
| 3R | 21507131..21507359 | 218..446 | 100 | -> | Minus |
| 3R | 21512049..21512253 | 14..217 | 98 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:37:13 Download gff for
BO18195.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17328061..17328391 | 447..777 | 100 | -> | Minus |
| arm_3R | 17332853..17333081 | 218..446 | 100 | -> | Minus |
| arm_3R | 17337771..17337975 | 14..217 | 98 | -> | Minus |
BO18195.5prime Sequence
804 bp (685 high quality bases) assembled on 2006-10-13
> BO18195.5prime
GAAGTTATCAGTCGACATGTCCAGCCACGAGGAGGATGACCATGAGCACG
AGAACGAGCACGGCGAAGAGGTGGAGGAACAGGAGATCCACGTGGATGTG
GACTCGGACTCGCGGATGTCATGTGGCAGCGGATCCGATGTGGATATGGA
CGGCGGCAGCTGCTACGACGAGTCCGAAACGCCATTGAGCGAGTCCCTGC
AGTCGGAGCAGACGCGCTCCTCGTCCAGTGAGAATCTGCCCTTCAGCATA
TCACGCCTGCTATCCAAGCCCTTCGAGACGAGTCACCACCACCACAACAA
CAACAACCACCTGCTCAGCAGCAGTCCGGGCTCCAGCAGCAACAACAACA
ACAGCGGCGAAAAGGGCGAGGAGAAGGAGCTACTGCAGCAGGAGGACCAC
GACCTGGCCTATAAGCTGGCCACCAGCATCGCCAACTCGACATACGGAAG
CGCCGCAGCACTATACTCGTATCCGCATCTCTATCCCTCAGCGGCCGGCG
GTCATGTGCTACGTGTACCGCCCCAGAGAACGCCGCTCACCTGGGCACTA
CCGCCACTGCATCACGCGGCGCTGGCACATCAGGCGGTCAAGGATCGGTT
GGCAGCTGCCTTTCCGATCGCCCGACGGATCGGACATCCCTACCAGAATC
GCACGCCGCCGAAGAGGAAAAAGCCACGCACATCCTTCCCGCGCATCCAG
GTGGCCGAGTTGGAGAAGCGCTTCCCCAAGCAAAAGTTATCTGGGATCCG
CGGAGCGAGCGGCACTGGCCCGCGGGATGAAAATGACCGATGCCCCGGTG
AAGA
BO18195.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:19:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7937-PA | 1020 | C15-RA | 1..721 | 17..737 | 3555 | 99.7 | Plus |
| CG7937-PA | 1020 | C15-RA | 721..787 | 738..804 | 210 | 92.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:53:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| C15-RA | 1856 | CG7937-RA | 273..1059 | 17..804 | 3810 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:53:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21502252..21502669 | 188..605 | 2090 | 100 | Plus |
| 3R | 32079331 | 3R | 21500258..21500430 | 17..189 | 865 | 100 | Plus |
| 3R | 32079331 | 3R | 21507128..21507328 | 603..804 | 855 | 96 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:53:25 has no hits.
BO18195.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:19:47 Download gff for
BO18195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7937-PA | 1..786 | 17..803 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 06:22:13 Download gff for
BO18195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| C15-RA | 273..1058 | 17..803 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:29:25 Download gff for
BO18195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| C15-RA | 273..1058 | 17..803 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:29:25 Download gff for
BO18195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21500258..21500430 | 17..189 | 100 | -> | Plus |
| 3R | 21502254..21502669 | 190..605 | 100 | -> | Plus |
| 3R | 21507131..21507327 | 606..803 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 06:22:13 Download gff for
BO18195.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17325980..17326152 | 17..189 | 100 | -> | Plus |
| arm_3R | 17327976..17328391 | 190..605 | 100 | -> | Plus |
| arm_3R | 17332853..17333049 | 606..803 | 95 | | Plus |
BO18195.complete Sequence
1051 bp assembled on 2006-10-11
GenBank Submission: FJ634341
> BO18195.complete
GAAGTTATCAGTCGACATGTCCAGCCACGAGGAGGATGACCATGAGCACG
AGAACGAGCACGGCGAAGAGGTGGAGGAACAGGAGATCCACGTGGATGTG
GACTCGGACTCGCGGATGTCATGTGGCAGCGGATCCGATGTGGATATGGA
CGGCGGCAGCTGCTACGACGAGTCCGAAACGCCATTGAGCGAGTCCCTGC
AGTCGGAGCAGACGCGCTCCTCGTCCAGTGAGAATCTGCCCTTCAGCATA
TCACGCCTGCTATCCAAGCCCTTCGAGACGAGTCACCACCACCACAACAA
CAACAACCACCTGCTCAGCAGCAGTCCGGGCTCCAGCAGCAACAACAACA
ACAGCGGCGAAAAGGGCGAGGAGAAGGAGCTACTGCAGCAGGAGGACCAC
GACCTGGCCTATAAGCTGGCCACCAGCATCGCCAACTCGACATACGGAAG
CGCCGCAGCACTATACTCGTATCCGCATCTCTATCCCTCAGCGGCCGGCG
GTCATGTGCTACGTGTACCGCCCCAGAGAACGCCGCTCACCTGGGCACTA
CCGCCACTGCATCACGCGGCGCTGGCACATCAGGCGGTCAAGGATCGGTT
GGCAGCTGCCTTTCCGATCGCCCGACGGATCGGACATCCCTACCAGAATC
GCACGCCGCCGAAGAGGAAAAAGCCACGCACATCCTTCACGCGCATCCAG
GTGGCCGAGTTGGAGAAGCGCTTCCACAAGCAAAAGTATCTGGCATCCGC
GGAGCGAGCGGCACTGGCCCGCGGACTGAAGATGACCGATGCCCAGGTGA
AGACGTGGTTCCAGAACCGACGCACCAAGTGGAGACGACAGACGGCCGAG
GAGCGCGAGGCGGAGCGGCAGGCGGCGAACAGACTGATGCTGTCCCTCCA
GGCGGAGGCCATCAGCAAGGGATTCGCGCCTCCTTCGGCACCCCTGGGTT
CCCAGGGGGGCGTGAACGGGGCACCGCTGGCTGCGTTGCACGGACTACAG
CCGTGGGCAGAGGCGTCGCATGCGGCGGGCTGCGCAAGCTTTCTAGACCA
T
BO18195.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:15:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| C15-RA | 1020 | CG7937-PA | 1..1017 | 17..1033 | 5085 | 100 | Plus |
| HHEX-RA | 972 | CG7056-PA | 679..753 | 764..838 | 180 | 82.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:15:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| C15-RA | 1856 | CG7937-RA | 273..1289 | 17..1033 | 5085 | 100 | Plus |
| HHEX-RA | 1267 | CG7056-RA | 922..996 | 764..838 | 180 | 82.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:15:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21502252..21502669 | 188..605 | 2090 | 100 | Plus |
| 3R | 32079331 | 3R | 21507128..21507359 | 603..834 | 1160 | 100 | Plus |
| 3R | 32079331 | 3R | 21512047..21512247 | 833..1033 | 1005 | 100 | Plus |
| 3R | 32079331 | 3R | 21500258..21500430 | 17..189 | 865 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:15:54 has no hits.
BO18195.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:21:25 Download gff for
BO18195.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| C15-RA | 1..1020 | 17..1037 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:50:25 Download gff for
BO18195.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| C15-RA | 4..1020 | 17..1035 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:53 Download gff for
BO18195.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| C15-RA | 273..1289 | 17..1035 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:21:25 Download gff for
BO18195.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| C15-RA | 2..1023 | 15..1037 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:14:19 Download gff for
BO18195.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| C15-RA | 273..1289 | 17..1035 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:14:19 Download gff for
BO18195.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21500258..21500430 | 17..189 | 100 | -> | Plus |
| 3R | 21502254..21502669 | 190..605 | 100 | -> | Plus |
| 3R | 21507131..21507359 | 606..834 | 100 | -> | Plus |
| 3R | 21512049..21512247 | 835..1035 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:53 Download gff for
BO18195.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17325980..17326152 | 17..189 | 100 | -> | Plus |
| arm_3R | 17327976..17328391 | 190..605 | 100 | -> | Plus |
| arm_3R | 17332853..17333081 | 606..834 | 100 | -> | Plus |
| arm_3R | 17337771..17337969 | 835..1035 | 99 | | Plus |
BO18195.pep Sequence
Translation from 16 to 1051
> BO18195.pep
MSSHEEDDHEHENEHGEEVEEQEIHVDVDSDSRMSCGSGSDVDMDGGSCY
DESETPLSESLQSEQTRSSSSENLPFSISRLLSKPFETSHHHHNNNNHLL
SSSPGSSSNNNNSGEKGEEKELLQQEDHDLAYKLATSIANSTYGSAAALY
SYPHLYPSAAGGHVLRVPPQRTPLTWALPPLHHAALAHQAVKDRLAAAFP
IARRIGHPYQNRTPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAAL
ARGLKMTDAQVKTWFQNRRTKWRRQTAEEREAERQAANRLMLSLQAEAIS
KGFAPPSAPLGSQGGVNGAPLAALHGLQPWAEASHAAGCASFLDH
BO18195.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:09:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| C15-PA | 339 | CG7937-PA | 1..339 | 1..339 | 1779 | 100 | Plus |
| Hmx-PE | 592 | CG43748-PE | 313..567 | 50..309 | 242 | 28.6 | Plus |
| Hmx-PC | 592 | CG43748-PC | 313..567 | 50..309 | 242 | 28.6 | Plus |
| Hmx-PD | 718 | CG43748-PD | 313..567 | 50..309 | 242 | 28.6 | Plus |
| CG18599-PA | 475 | CG18599-PA | 90..377 | 5..278 | 209 | 24.2 | Plus |
