Clone Sequence Records
BO18202.3prime Sequence
712 bp (711 high quality bases) assembled on 2006-10-13
> BO18202.3prime
ATGGTCTAGAAAGCTTGCGATGCCCACGAATCCGTAGACTTCCAGCACCC
GAATCTCGAAGTCGCCCGACGGACACAGCGGCGGATTGTTAAAGGTCTTG
CAGCTGTCCGTCTTTCCGAAACGAATGTTCTCGTCCATCCAGATGGCCTG
CCCCTCGCCGCCACCAATAGTGATCATCTTGGAGTCGGCCGCCATAAATA
GTTCGGAGCTGTGTCCCAGGTCCTTGTCGCCCTCAATGCCCACCCATGGG
TACTTGGCTCTTTCTGGATATAGGGAGAACAAAAAGGTTTCGCCCGTACC
GAAGTAGGCCTGTCGCTGGCCCTTGTCATCTTTTACATTTCTTTCAAACC
AGCGCGAAGAGCAGTAGGCACCAAATACCTCATTATTGCACGTCTTGATC
ATGAGCAGCGTGGGTTCATGCTGCTCCACCCGAACGTAGAACGTGGTTAG
TGAGCAGCCGTGCTCCTCCGTGGTGTAGAGCAGCACCGGTTGGTACATTG
TTATCCGCACGGGCAGCCAGGACCACAGCGTGAACAGCTCTCGGATGGTC
AGGGTGTGGGACATCATTTGGATGTTGACCTGCGACTGACTAGTGGGCAG
ATTATCACTTGAACGCGATTTGATTAATTGCTTCGAACCGCTGGTGAGCA
CGGAGCGGCTTTTTAGTAGCATTTCAGTCTTGATAAATATTCTAGAAATA
TACTGGGTACTC
BO18202.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:11:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9339-PE | 1707 | CG9339-RE | 1011..1704 | 712..19 | 3470 | 100 | Minus |
| CG9339-PF | 1722 | CG9339-RF | 1026..1719 | 712..19 | 3470 | 100 | Minus |
| CG9339-PD | 1707 | CG9339-RD | 1011..1704 | 712..19 | 3470 | 100 | Minus |
| CG9339-PG | 1707 | CG9339-RG | 1011..1704 | 712..19 | 3470 | 100 | Minus |
| CG9339-PB | 1764 | CG9339-RB | 1243..1761 | 537..19 | 2595 | 100 | Minus |
| CG9339-PC | 1779 | CG9339-RC | 1258..1776 | 537..19 | 2595 | 100 | Minus |
| CG9339-PH | 1764 | CG9339-RH | 1243..1761 | 537..19 | 2595 | 100 | Minus |
| CG9339-PA | 1764 | CG9339-RA | 1243..1761 | 537..19 | 2595 | 100 | Minus |
| CG9339-PB | 1764 | CG9339-RB | 1011..1186 | 712..537 | 880 | 100 | Minus |
| CG9339-PC | 1779 | CG9339-RC | 1026..1201 | 712..537 | 880 | 100 | Minus |
| CG9339-PH | 1764 | CG9339-RH | 1011..1186 | 712..537 | 880 | 100 | Minus |
| CG9339-PA | 1764 | CG9339-RA | 1011..1186 | 712..537 | 880 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 16:07:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43739-RA | 4863 | CG43739-RA | 1753..2446 | 712..19 | 3470 | 100 | Minus |
| sky-RI | 4658 | CG9339-RI | 1548..2241 | 712..19 | 3470 | 100 | Minus |
| sky-RG | 4863 | CG9339-RG | 1753..2446 | 712..19 | 3470 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 16:07:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20873957..20874179 | 158..380 | 1115 | 100 | Plus |
| 2L | 23513712 | 2L | 20876912..20877085 | 538..711 | 870 | 100 | Plus |
| 2L | 23513712 | 2L | 20874271..20874434 | 376..539 | 820 | 100 | Plus |
| 2L | 23513712 | 2L | 20873752..20873891 | 19..158 | 700 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 16:07:55 has no hits.
BO18202.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:19:48 Download gff for
BO18202.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9339-PG | 1011..1707 | 15..712 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 12:41:10 Download gff for
BO18202.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sky-RD | 1913..2609 | 15..712 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:29:46 Download gff for
BO18202.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sky-RG | 1753..2449 | 15..712 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:29:46 Download gff for
BO18202.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20873748..20873890 | 15..157 | 98 | <- | Plus |
| 2L | 20873957..20874177 | 158..378 | 100 | <- | Plus |
| 2L | 20874274..20874432 | 379..537 | 100 | <- | Plus |
| 2L | 20876912..20877085 | 538..712 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 12:41:10 Download gff for
BO18202.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20873748..20873890 | 15..157 | 98 | <- | Plus |
| arm_2L | 20873957..20874177 | 158..378 | 100 | <- | Plus |
| arm_2L | 20874274..20874432 | 379..537 | 100 | <- | Plus |
| arm_2L | 20876912..20877085 | 538..712 | 99 | | Plus |
BO18202.5prime Sequence
790 bp (749 high quality bases) assembled on 2006-10-13
> BO18202.5prime
GAAGTTATCAGTCGACATGGTTGGCAAAGTCTTGGGCATCAAAGACTTGG
AGCAGTTCAGTAGCCGGCGCAGCAGCGTCTACGTCGATCCCGAGTGCGAC
AAGTTCTTCGAGCTGCCGCTCTTCATCGCGGCCAGCTCGAACGACATCAC
CACCAAATGCCAGTGCTTCCAGTTCAGTCCAGGCAAGGAACCGGCACTGC
GCTCCTACACGGAAATCCAGCAGCTGCTGCAGCAGGGCAAGAAGCGCGAC
GTGAAGAACATACTCAGGGAGAACTCGTGGCCCATTAACTCCCCGATCCG
AGCCCAGCTATGGCCGATGTTGTGTGGCCAGCACCAGACCAAACAGCAAA
TGCTAGATGGCTTCTACTGGGAGATGGTTCACCAGGTCTTTGGCACCACG
GAGCTGTCGGAGAAGCCGATCATGCTGCCCGCCTTTGTGGATGCCACCCA
CTGTTTGCCCTACCACTTGACCAGCACGGGACGAGCCGTGGCCGATCGCA
TCGTGAATGTCCTGGGCTACGACTGCCCCGATATTACCTACAGTCCAGTA
TTGTATCCCATTACATCGATACTTTTGCATTTCATGTCGGAGGAGGAGGC
GTACATATGTCTGGCCGGTCTGGTCGGTAGCAAGGAGAAGGTATTCATCA
ATCAAACCAAACTACAGCACGAAGTCACTTGAAAGACGGTGATGCAGATA
GCCAAAAAGCACACAAAAAGTGCTACTTCGTATTTCCAACGTATTTGCCC
GGGCCTGAAGCTAGAACGCATCTTCATGGACTGGTGCTGG
BO18202.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:11:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9339-PC | 1779 | CG9339-RC | 1..774 | 17..790 | 3845 | 99.8 | Plus |
| CG9339-PF | 1722 | CG9339-RF | 1..774 | 17..790 | 3845 | 99.8 | Plus |
| CG9339-PB | 1764 | CG9339-RB | 151..759 | 182..790 | 3020 | 99.8 | Plus |
| CG9339-PE | 1707 | CG9339-RE | 151..759 | 182..790 | 3020 | 99.8 | Plus |
| CG9339-PD | 1707 | CG9339-RD | 151..759 | 182..790 | 3020 | 99.8 | Plus |
| CG9339-PH | 1764 | CG9339-RH | 151..759 | 182..790 | 3020 | 99.8 | Plus |
| CG9339-PG | 1707 | CG9339-RG | 151..759 | 182..790 | 3020 | 99.8 | Plus |
| CG9339-PA | 1764 | CG9339-RA | 151..759 | 182..790 | 3020 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:16:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sky-RI | 4658 | CG9339-RI | 523..1296 | 17..790 | 3855 | 99.9 | Plus |
| sky-RF | 3041 | CG9339-RF | 566..1339 | 17..790 | 3855 | 99.9 | Plus |
| sky-RC | 4758 | CG9339-RC | 566..1339 | 17..790 | 3855 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:16:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20881987..20882194 | 590..383 | 1040 | 100 | Minus |
| 2L | 23513712 | 2L | 20882260..20882467 | 387..180 | 1040 | 100 | Minus |
| 2L | 23513712 | 2L | 20885281..20885454 | 190..17 | 840 | 98.9 | Minus |
| 2L | 23513712 | 2L | 20877553..20877678 | 715..590 | 615 | 99.2 | Minus |
| 2L | 23513712 | 2L | 20877403..20877477 | 790..716 | 375 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:16:19 has no hits.
BO18202.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:19:49 Download gff for
BO18202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9339-PF | 1..774 | 17..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:36:00 Download gff for
BO18202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sky-RC | 566..1339 | 17..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:28:38 Download gff for
BO18202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sky-RC | 566..1339 | 17..790 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:28:38 Download gff for
BO18202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20882262..20882464 | 183..385 | 100 | <- | Minus |
| 2L | 20885289..20885454 | 17..182 | 100 | | Minus |
| 2L | 20877403..20877477 | 716..790 | 100 | <- | Minus |
| 2L | 20877553..20877677 | 591..715 | 99 | <- | Minus |
| 2L | 20881987..20882191 | 386..590 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:36:00 Download gff for
BO18202.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20877403..20877477 | 716..790 | 100 | <- | Minus |
| arm_2L | 20877553..20877677 | 591..715 | 99 | <- | Minus |
| arm_2L | 20881987..20882191 | 386..590 | 100 | <- | Minus |
| arm_2L | 20882262..20882464 | 183..385 | 100 | <- | Minus |
| arm_2L | 20885289..20885454 | 17..182 | 100 | | Minus |
BO18202.complete Sequence
1753 bp assembled on 2010-05-05
GenBank Submission: KX797464
> BO18202.complete
GAAGTTATCAGTCGACATGGTTGGCAAAGTCTTGGGCATCAAAGACTTGG
AGCAGTTCAGTAGCCGGCGCAGCAGCGTCTACGTCGATCCCGAGTGCGAC
AAGTTCTTCGAGCTGCCGCTCTTCATCGCGGCCAGCTCGAACGACATCAC
CACCAAATGCCAGTGCTTCCAGTTCAGTCCAGGCAAGGAACCGGCACTGC
GCTCCTACACGGAAATCCAGCAGCTGCTGCAGCAGGGCAAGAAGCGCGAC
GTGAAGAACATACTCAGGGAGAACTCGTGGCCCATTAACTCCCCGATCCG
AGCCCAGCTATGGCCGATGTTGTGTGGCCAGCACCAGACCAAACAGCAAA
TGCTAGATGGCTTCTACTGGGAGATGGTTCACCAGGTCTTTGGCACCACG
GAGCTGTCGGAGAAGCCGATCATGCTGCCCGCCTTTGTGGATGCCACCCA
CTGTTTGCCCTACCACTTGACCAGCACGGGACGAGCCGTGGCCGATCGCA
TCGTGAATGTCCTGGGCTACGACTGCCCCGATATTACCTACAGTCCAGTA
TTGTATCCCATTACATCGATACTTTTGCATTTCATGTCGGAGGAGGAGGC
GTACATATGTCTGGCCGGTCTGGTCGGTAGCAAGGAGAAGGTATTCATCA
ATCAAACCAAACTACAGCACGAAGTCACTTGGAAGACGGTGATGCAGATA
GCCAAAAAGCACACAAAAAGTGCTACTTCGTATTTCCAACGTATTTGCCC
GGGCCTGAAGCTAGAACGCATCTTCATGGACTGGTGCTGGTGGATTCTAG
CCGGTCTACCCTTCCAGCATCTGGTGCGGATCATGGACTGCTACTTCCAC
GAGGGCATCAAGGTCCTGTACCGCGTGGCCCTCGTCATACTCAACCTGTT
TCACAAGGAGTGCCAGTCGAACAACGAATGGAGTCCGGACAACATTAAAA
ACGACATTGGCAACGCTTTGATCAAGTTCTGCAAGAAGATACCAGTGTCG
CCGGCGAAGTTGCTCCATGCCGCGTTTAGTATTAGGGGACTGAGTACCCA
GTATATTTCTAGAATATTTATCAAGACTGAAATGCTACTAAAAAGCCGCT
CCGTGCTCACCAGCGGTTCGAAGCAATTAATCAAATCGCGTTCAAGTGAT
AATCTGCCCACTAGTCAGTCGCAGGTCAACATCCAAATGATGTCCCACAC
CCTGACCATCCGAGAGCTGTTCACGCTGTGGTCCTGGCTGCCCGTGCGGA
TAACAATGTACCAACCGGTGCTGCTCTACACCACGGAGGAGCACGGCTGC
TCACTAACCACGTTCTACGTTCGGGTGGAGCAGCATGAACCCACGCTGCT
CATGATCAAGACGTGCAATAATGAGGTATTTGGTGCCTACTGCTCTTCGC
GCTGGTTTGAAAGAAATGTAAAAGATGACAAGGGCCAGCGACAGGCCTAC
TTCGGTACGGGCGAAACCTTTTTGTTCTCCCTATATCCAGAAAGAGCCAA
GTACCCATGGGTGGGCATTGAGGGCGACAAGGACCTGGGACACAGCTCCG
AACTATTTATGGCGGCCGACTCCAAGATGATCACTATTGGTGGCGGCGAG
GGGCAGGCCATCTGGATGGACGAGAACATTCGTTTCGGAAAGACGGACAG
CTGCAAGACCTTTAACAATCCGCCGCTGTGTCCGTCGGGCGACTTCGAGA
TTCGGGTGCTGGAAGTCTACGGATTCGTGGGCATCGCAAGCTTTCTAGAC
CAT
BO18202.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:32:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sky-RI | 1722 | CG9339-PI | 1..1719 | 17..1735 | 8595 | 100 | Plus |
| sky-RF | 1722 | CG9339-PF | 1..1719 | 17..1735 | 8595 | 100 | Plus |
| sky-RG | 1707 | CG9339-PG | 151..1704 | 182..1735 | 7770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:32:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sky-RI | 4658 | CG9339-RI | 523..2241 | 17..1735 | 8595 | 100 | Plus |
| sky-RF | 3041 | CG9339-RF | 566..2284 | 17..1735 | 8595 | 100 | Plus |
| CG43739-RA | 4863 | CG43739-RA | 893..2446 | 182..1735 | 7770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:31:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20877149..20877477 | 1044..716 | 1645 | 100 | Minus |
| 2L | 23513712 | 2L | 20873957..20874179 | 1596..1374 | 1115 | 100 | Minus |
| 2L | 23513712 | 2L | 20881987..20882194 | 590..383 | 1040 | 100 | Minus |
| 2L | 23513712 | 2L | 20882260..20882467 | 387..180 | 1040 | 100 | Minus |
| 2L | 23513712 | 2L | 20876912..20877085 | 1216..1043 | 870 | 100 | Minus |
| 2L | 23513712 | 2L | 20885281..20885454 | 190..17 | 840 | 98.9 | Minus |
| 2L | 23513712 | 2L | 20874271..20874434 | 1378..1215 | 820 | 100 | Minus |
| 2L | 23513712 | 2L | 20873752..20873891 | 1735..1596 | 700 | 100 | Minus |
| 2L | 23513712 | 2L | 20877553..20877678 | 715..590 | 630 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:32:00 has no hits.
BO18202.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-05 18:40:14 Download gff for
BO18202.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9339-RF | 564..2282 | 17..1737 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:21:38 Download gff for
BO18202.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sky-RF | 566..2284 | 17..1737 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:31:09 Download gff for
BO18202.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sky-RF | 566..2284 | 17..1737 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:31:09 Download gff for
BO18202.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20881987..20882191 | 386..590 | 100 | <- | Minus |
| 2L | 20882262..20882464 | 183..385 | 100 | <- | Minus |
| 2L | 20885289..20885454 | 17..182 | 100 | | Minus |
| 2L | 20877553..20877677 | 591..715 | 100 | <- | Minus |
| 2L | 20873750..20873890 | 1597..1737 | 98 | <- | Minus |
| 2L | 20873957..20874177 | 1376..1596 | 100 | <- | Minus |
| 2L | 20874274..20874432 | 1217..1375 | 100 | <- | Minus |
| 2L | 20876912..20877083 | 1045..1216 | 100 | <- | Minus |
| 2L | 20877149..20877477 | 716..1044 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:21:38 Download gff for
BO18202.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20873750..20873890 | 1597..1737 | 98 | <- | Minus |
| arm_2L | 20873957..20874177 | 1376..1596 | 100 | <- | Minus |
| arm_2L | 20874274..20874432 | 1217..1375 | 100 | <- | Minus |
| arm_2L | 20876912..20877083 | 1045..1216 | 100 | <- | Minus |
| arm_2L | 20877149..20877477 | 716..1044 | 100 | <- | Minus |
| arm_2L | 20877553..20877677 | 591..715 | 100 | <- | Minus |
| arm_2L | 20881987..20882191 | 386..590 | 100 | <- | Minus |
| arm_2L | 20882262..20882464 | 183..385 | 100 | <- | Minus |
| arm_2L | 20885289..20885454 | 17..182 | 100 | | Minus |
BO18202.pep Sequence
Translation from 16 to 1753
> BO18202.pep
MVGKVLGIKDLEQFSSRRSSVYVDPECDKFFELPLFIAASSNDITTKCQC
FQFSPGKEPALRSYTEIQQLLQQGKKRDVKNILRENSWPINSPIRAQLWP
MLCGQHQTKQQMLDGFYWEMVHQVFGTTELSEKPIMLPAFVDATHCLPYH
LTSTGRAVADRIVNVLGYDCPDITYSPVLYPITSILLHFMSEEEAYICLA
GLVGSKEKVFINQTKLQHEVTWKTVMQIAKKHTKSATSYFQRICPGLKLE
RIFMDWCWWILAGLPFQHLVRIMDCYFHEGIKVLYRVALVILNLFHKECQ
SNNEWSPDNIKNDIGNALIKFCKKIPVSPAKLLHAAFSIRGLSTQYISRI
FIKTEMLLKSRSVLTSGSKQLIKSRSSDNLPTSQSQVNIQMMSHTLTIRE
LFTLWSWLPVRITMYQPVLLYTTEEHGCSLTTFYVRVEQHEPTLLMIKTC
NNEVFGAYCSSRWFERNVKDDKGQRQAYFGTGETFLFSLYPERAKYPWVG
IEGDKDLGHSSELFMAADSKMITIGGGEGQAIWMDENIRFGKTDSCKTFN
NPPLCPSGDFEIRVLEVYGFVGIASFLDH
BO18202.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:08:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sky-PI | 573 | CG9339-PI | 1..573 | 1..573 | 3060 | 100 | Plus |
| sky-PF | 573 | CG9339-PF | 1..573 | 1..573 | 3060 | 100 | Plus |
| sky-PC | 592 | CG9339-PC | 1..592 | 1..573 | 3030 | 96.8 | Plus |
| sky-PG | 568 | CG9339-PG | 51..568 | 56..573 | 2772 | 100 | Plus |
| sky-PD | 568 | CG9339-PD | 51..568 | 56..573 | 2772 | 100 | Plus |
