Clone Sequence Records
BO18204.3prime Sequence
715 bp (685 high quality bases) assembled on 2006-10-13
> BO18204.3prime
ATGGTCTAGAAAGCTTGCCTTTCCCTGCAATTTGGACAGAAAGTCCATAA
GAAACTGATGCCTACTACGTAGTTCTTCTATACTGCGATTCTTTAGCTTG
GCGCGCATACGCCGAATGAGCTGCTCTCGATCCCGTGCCCCTATTTTCAT
TTCGATCAGGATTACTTTGTCCTCTTCACGAGTCCAAGGTGCCGAGTGGG
AACTACCAGACTCAGAGTGCGATGTGGTGGCAGGTAATGCCGCTGCCGAT
TCCGATCTATCTTCGGTGGTGGTGCAGTTCGCCAGCGTGGCCACAACATC
CAGCTTGCAGTCCTCATCGCTATCGAATTGTGTTGTGATCACGTGCTGTG
GTGTGTTGCCAGCACTTAATTGCAGTGGCTCCAGCTCCTCCTCCGATTGA
TCTGTGTCCATTTTGAGATTTGTACAGAAAGGCATATTCTCGGCACTTTC
ATCCAGGCTGACTACCTCGACTTTCGTAATAGCTTCAGAGCTGCATTGGT
TTGGAGGTTGCTGCTTGGCTTGCGCAATAATTCGAATGCCCGCCTTTGTA
TCTGCTGCATCCCGCACGCTCTCCTGATCGATCAGCGTGCGCAAGCGCTT
TGCACACTCAATGGCTGGCGAAGATGAAGGCTGAGACTCATGGATAACAA
CCATTGGCTGATTATTGGCACGTTGTCTGCTCTGAGTTTGATTAAGAGGA
GATCGGATCCTTCTT
BO18204.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:11:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33456-PA | 1998 | CG33456-RA | 1305..1995 | 709..19 | 3455 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:17:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mute-RD | 3340 | CG34415-RD | 2222..2917 | 715..19 | 3460 | 99.9 | Minus |
| mute-RC | 5751 | CG34415-RC | 4633..5328 | 715..19 | 3460 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:17:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16948719..16949409 | 19..709 | 3455 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:17:55 has no hits.
BO18204.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:19:51 Download gff for
BO18204.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33456-PA | 1300..1998 | 16..715 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 13:51:43 Download gff for
BO18204.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mute-RC | 4633..5338 | 8..715 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:01:53 Download gff for
BO18204.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mute-RC | 4633..5338 | 8..715 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:01:53 Download gff for
BO18204.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16948709..16949414 | 8..715 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 13:51:43 Download gff for
BO18204.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12836214..12836919 | 8..715 | 99 | | Plus |
BO18204.5prime Sequence
786 bp (758 high quality bases) assembled on 2006-10-13
> BO18204.5prime
GAAGTTATCAGTCGACATGTTCTGCAGCAATACAAACTCTAAAACGGCAG
CGCAGCCAAAGAGATCTAGGAGTGATGATGAGGCGGCGAAGCTGAGAAGA
GCCAACCGGCAGGAGGAGATGCTTCGCCAAATGCTCCAGCCGGATACTAC
AGAAGAGCGCAATCGCAAAGATGCCATTTTTGCCATGAATTTTTATGAAA
AGGTAGAGGAGGCCTTGCTGAGTGCCAATCGCCTAGATGATTGCAAAAAA
TTCAACAGTATTTTGCAAAACTTCGACCCCAGGCAGGAGAAAGTTTCATC
TTTGTATTTGAAAGTGGAAGAAATTTTGCTACCCACTCATCCCGAACTGG
CTGAAGTATTCCTCAACTTTTTGCTACCTGCCGAGGCCGCTGAGATGGGA
AAATTCTTTGAGCACTTTATGATATGCAATGCTACCAACTTTATCAACAA
ACTTAACATTTACTTCAGTAAGCAGCCAGCTCAAATCAGGAAGATTTATG
CCTGTCTAAACGAGTTGGCCGAAATGCCTAATGTCAGCATGAAAAAAGTT
GAAAATAAGATAATGCCCTTGCTCAAGGGCAATCAATTTCTGATCGATTG
GTTTGTGCAACAATTCCCACAGGGAAAACCACCAAAAAGAATCCTTTCTC
CTGTAGAGACCATAAATTTGCATGACGTTCAAAACAATACAACGGGAGAA
TATACGGAAACTATTCAAGAGTTTACAGATGTACCTACGCCCAGTAAACC
AGGTTGTCACTTAAAGTATATCAATGGTCGCATATT
BO18204.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:11:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33456-PA | 1998 | CG33456-RA | 1..770 | 17..786 | 3825 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:21:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mute-RD | 3340 | CG34415-RD | 923..1692 | 17..786 | 3835 | 99.9 | Plus |
| mute-RC | 5751 | CG34415-RC | 3334..4103 | 17..786 | 3835 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:21:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16950152..16950481 | 639..310 | 1650 | 100 | Minus |
| 2R | 25286936 | 2R | 16950742..16950901 | 176..17 | 800 | 100 | Minus |
| 2R | 25286936 | 2R | 16949944..16950092 | 786..638 | 730 | 99.3 | Minus |
| 2R | 25286936 | 2R | 16950541..16950674 | 310..177 | 670 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:21:31 has no hits.
BO18204.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:19:51 Download gff for
BO18204.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33456-PA | 1..770 | 17..786 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:27:52 Download gff for
BO18204.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mute-RC | 3334..4103 | 17..786 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:46:57 Download gff for
BO18204.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mute-RC | 3334..4103 | 17..786 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:46:57 Download gff for
BO18204.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16949944..16950090 | 640..786 | 99 | <- | Minus |
| 2R | 16950152..16950480 | 311..639 | 100 | <- | Minus |
| 2R | 16950541..16950674 | 177..310 | 100 | <- | Minus |
| 2R | 16950742..16950901 | 17..176 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:27:52 Download gff for
BO18204.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12837449..12837595 | 640..786 | 99 | <- | Minus |
| arm_2R | 12837657..12837985 | 311..639 | 100 | <- | Minus |
| arm_2R | 12838046..12838179 | 177..310 | 100 | <- | Minus |
| arm_2R | 12838247..12838406 | 17..176 | 100 | | Minus |
BO18204.complete Sequence
2029 bp assembled on 2010-05-05
GenBank Submission: KX795654
> BO18204.complete
GAAGTTATCAGTCGACATGTTCTGCAGCAATACAAACTCTAAAACGGCAG
CGCAGCCAAAGAGATCTAGGAGTGATGATGAGGCGGCGAAGCTGAGAAGA
GCCAACCGGCAGGAGGAGATGCTTCGCCAAATGCTCCAGCCGGATACTAC
AGAAGAGCGCAATCGCAAAGATGCCATTTTTGCCATGAATTTTTATGAAA
AGGTAGAGGAGGCCTTGCTGAGTGCCAATCGCCTAGATGATTGCAAAAAA
TTCAACAGTATTTTGCAAAACTTCGACCCCAGGCAGGAGAAAGTTTCATC
TTTGTATTTGAAAGTGGAAGAAATTTTGCTACCCACTCATCCCGAACTGG
CTGAAGTATTCCTCAACTTTTTGCTACCTGCCGAGGCCGCTGAGATGGGA
AAATTCTTTGAGCACTTTATGATATGCAATGCTACCAACTTTATCAACAA
ACTTAACATTTACTTCAGTAAGCAGCCAGCTCAAATCAGGAAGATTTATG
CCTGTCTAAACGAGTTGGCCGAAATGCCTAATGTCAGCATGAAAAAAGTT
GAAAATAAGATAATGCCCTTGCTCAAGGGCAATCAATTTCTGATCGATTG
GTTTGTGCAACAATTCCCACAGGGAAAACCACCAAAAAGAATCCTTTCTC
CTGTAGAGACCATAAATTTGCATGACGTTCAAAACAATACAACGGGAGAA
TATACGGAAACTATTCAAGAGTTTACAGATGTACCTACGCCAAGTAAACC
AGGTTGTCACTTAAAGTATATCAATGGTCGCATATTTTATGGAGCCAAGA
TCCTATTGCCTGCCAAACTGTCTTTTATGGCTGCCAGTATTTACAATGAA
CAATCTCATGACGTGCCACCCGTCTCCAGTGACTCGATAAACTGCGCCCA
TGGTATTCGTGCCCAGGGAGAAAAACTTCTTAGTATGGCTTCCAATACAG
ATAGCGACGATGGCGCGGATCGGAGTGAGGAAGATGATGCCAGCCGCGCC
TTGATTATTGATACCACGAGTGATGAGCAGAACAGCTGCTCATCTATTGA
GATGTGCGATGAGACAGGCTTAAGAGCACATGCAATCAGATTGAATCCCG
GCTTGTATACCAACTCAAGCTTTAACAATGCAGCGACCAGTACGCCCAAT
CTGGGCAACTCTCACCAATCCCATCATCCGCACGCCAAAAAAACTGCCAT
AAACTTTGGTGAAATATCCCCACGCAAGCAATCGGCATTTAACAACTCGG
GATTGAGTCCCTTATCGGCGGCCCCCAACAGTTCCCCTCAAGTCGACAAA
CGAAAGTCACCTACTAAGAAGATCCGATCTCCTCTTAATCAAACTCAGAG
CAGACAACGTGCCAATAATCAGCCAATGGTTGTTATCCATGAGTCTCAGC
CTTCATCTTCGCCAGCCATTGAGTGTGCAAAGCGCTTGCGCACGCTGATC
GATCAGGAGAGCGTGCGGGATGCAGCAGATACAAAGGCGGGCATTCGAAT
TATTGCGCAAGCCAAGCAGCAACCTCCAAACCAATGCAGCTCTGAAGCTA
TTACGAAAGTCGAGGTAGTCAGCCTGGATGAAAGTGCCGAGAATATGCCT
TTCTGTACAAATCTCAAAATGGACACAGATCAATCGGAGGAGGAGCTGGA
GCCACTGCAATTAAGTGCTGGCAACACACCACAGCACGTGATCACAACAC
AATTCGATAGCGATGAGGACTGCAAGCTGGATGTTGTGGCCACGCTGGCG
AACTGCACCACCACCGAAGATAGATCGGAATCGGCAGCGGCATTACCTGC
CACCACATCGCACTCTGAGTCTGGTAGTTCCCACTCGGCACCTTGGACTC
GTGAAGAGGACAAAGTAATCCTGATCGAAATGAAAATAGGGGCACGGGAT
CGAGAGCAGCTCATTCGGCGTATGCGCGCCAAGCTAAAGAATCGCAGTAT
AGAAGAACTACGTAGTAGGCATCAGTTTCTTATGGACTTTCTGTCCAAAT
TGCAGGGAAAGGCAAGCTTTCTAGACCAT
BO18204.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:31:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mute-RD | 1998 | CG34415-PD | 1..1995 | 17..2011 | 9975 | 100 | Plus |
| mute-RC | 5220 | CG34415-PC | 3223..5217 | 17..2011 | 9975 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:31:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mute-RD | 3340 | CG34415-RD | 923..2917 | 17..2011 | 9975 | 100 | Plus |
| mute-RC | 5751 | CG34415-RC | 3334..5328 | 17..2011 | 9975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:31:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16948719..16950092 | 2011..638 | 6870 | 100 | Minus |
| 2R | 25286936 | 2R | 16950152..16950481 | 639..310 | 1650 | 100 | Minus |
| 2R | 25286936 | 2R | 16950742..16950901 | 176..17 | 800 | 100 | Minus |
| 2R | 25286936 | 2R | 16950541..16950674 | 310..177 | 670 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:31:49 has no hits.
BO18204.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-05-05 18:40:13 Download gff for
BO18204.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34415-RD | 918..2907 | 22..2013 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:21:34 Download gff for
BO18204.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mute-RC | 3339..5328 | 22..2013 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:31:06 Download gff for
BO18204.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mute-RC | 3339..5328 | 22..2013 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:31:06 Download gff for
BO18204.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16950152..16950480 | 311..639 | 100 | <- | Minus |
| 2R | 16950541..16950674 | 177..310 | 100 | <- | Minus |
| 2R | 16950742..16950896 | 22..176 | 100 | | Minus |
| 2R | 16948716..16950090 | 640..2013 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:21:34 Download gff for
BO18204.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12836221..12837595 | 640..2013 | 99 | <- | Minus |
| arm_2R | 12837657..12837985 | 311..639 | 100 | <- | Minus |
| arm_2R | 12838046..12838179 | 177..310 | 100 | <- | Minus |
| arm_2R | 12838247..12838401 | 22..176 | 100 | | Minus |
BO18204.pep Sequence
Translation from 16 to 2029
> BO18204.pep
MFCSNTNSKTAAQPKRSRSDDEAAKLRRANRQEEMLRQMLQPDTTEERNR
KDAIFAMNFYEKVEEALLSANRLDDCKKFNSILQNFDPRQEKVSSLYLKV
EEILLPTHPELAEVFLNFLLPAEAAEMGKFFEHFMICNATNFINKLNIYF
SKQPAQIRKIYACLNELAEMPNVSMKKVENKIMPLLKGNQFLIDWFVQQF
PQGKPPKRILSPVETINLHDVQNNTTGEYTETIQEFTDVPTPSKPGCHLK
YINGRIFYGAKILLPAKLSFMAASIYNEQSHDVPPVSSDSINCAHGIRAQ
GEKLLSMASNTDSDDGADRSEEDDASRALIIDTTSDEQNSCSSIEMCDET
GLRAHAIRLNPGLYTNSSFNNAATSTPNLGNSHQSHHPHAKKTAINFGEI
SPRKQSAFNNSGLSPLSAAPNSSPQVDKRKSPTKKIRSPLNQTQSRQRAN
NQPMVVIHESQPSSSPAIECAKRLRTLIDQESVRDAADTKAGIRIIAQAK
QQPPNQCSSEAITKVEVVSLDESAENMPFCTNLKMDTDQSEEELEPLQLS
AGNTPQHVITTQFDSDEDCKLDVVATLANCTTTEDRSESAAALPATTSHS
ESGSSHSAPWTREEDKVILIEMKIGARDREQLIRRMRAKLKNRSIEELRS
RHQFLMDFLSKLQGKASFLDH
BO18204.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:08:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mute-PD | 665 | CG34415-PD | 1..665 | 1..665 | 3419 | 100 | Plus |
| mute-PC | 1739 | CG34415-PC | 1075..1739 | 1..665 | 3419 | 100 | Plus |
