Clone Sequence Records
BO18206.5prime Sequence
540 bp (458 high quality bases) assembled on 2006-10-13
> BO18206.5prime
GAAGTTATCATTCGACATGGCTGACGCCGCCCACCAGGAGTTCGCCCGCC
GGCTGGCCCTTTTCTCTATCAACGTGTACGGCAAGCTGTCGGGGCAGAAG
CCCGGCGAGAACATCGTCTTCTCGCCCTTTTCCATCCAGACTTGTGCGGC
GATGGCCAGGCTGGGTGCAGAAAACGAGACGGCTACCCAGCTGGACCAGG
GACTGGGCTTGGCCTCTAGTGACCCAGAGCAAATCGCACACAGTTTTCAC
CAAGTGCTGGCCGCCTACCATGACAGTCAGATCTTGCGCATCGCCAACAA
GATTTTCGTCATGGATGGCTACCAGCTGCGCCAGGAGTTTGATCAGCTGT
TATCCAAGCAGTTCCTCTCGGCGGCTCAGAGCGTGGACTTTTCCAAAAAT
GTACAAGCAGCGGCCACCATCAACAATTGGGTTGAGCAGCGCACCAACCA
TCTGATCAAGGAACTTGTGTCGGCTGATGTATTGAACTCCGAATCTCGAC
TCGTCCTTGTGAAACGCATTCACTTTCAGGGCACCTGGCA
BO18206.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:12:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9453-PC | 1257 | Spn4-RC | 117..641 | 16..540 | 2375 | 98 | Plus |
CG9453-PB | 1275 | Spn4-RB | 96..620 | 16..540 | 2375 | 98 | Plus |
CG9453-PD | 1236 | Spn4-RD | 96..620 | 16..540 | 2375 | 98 | Plus |
CG9453-PE | 1236 | Spn4-RE | 96..620 | 16..540 | 2375 | 98 | Plus |
CG9453-PF | 1236 | Spn4-RF | 96..620 | 16..540 | 2375 | 98 | Plus |
CG9453-PI | 1221 | Spn4-RI | 96..620 | 16..540 | 2375 | 98 | Plus |
CG9453-PA | 1179 | Spn4-RA | 1..524 | 17..540 | 2370 | 98 | Plus |
CG9453-PG | 1140 | Spn4-RG | 1..524 | 17..540 | 2370 | 98 | Plus |
CG9453-PH | 1140 | Spn4-RH | 1..524 | 17..540 | 2370 | 98 | Plus |
CG9453-PJ | 1125 | Spn4-RJ | 1..524 | 17..540 | 2370 | 98 | Plus |
CG9453-PK | 1140 | Spn4-RK | 1..524 | 17..540 | 2370 | 98 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:16:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spn42Da-RL | 2155 | CG9453-RL | 640..1164 | 16..540 | 2475 | 98.3 | Plus |
Spn42Da-RK | 1789 | CG9453-RK | 274..798 | 16..540 | 2475 | 98.3 | Plus |
Spn42Da-RJ | 1490 | CG9453-RJ | 274..798 | 16..540 | 2475 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:16:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6877764..6878288 | 540..16 | 2475 | 98.1 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:16:27 has no hits.
BO18206.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:19:52 Download gff for
BO18206.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9453-PE | 92..619 | 8..539 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:36:03 Download gff for
BO18206.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn42Da-RJ | 270..797 | 8..539 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:29:09 Download gff for
BO18206.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn42Da-RJ | 270..797 | 8..539 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:29:09 Download gff for
BO18206.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6877765..6878292 | 8..539 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:36:03 Download gff for
BO18206.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2765270..2765797 | 8..539 | 97 | | Minus |
BO18206.complete Sequence
1171 bp assembled on 2010-06-25
GenBank Submission: KX798128
> BO18206.complete
GAAGTTATCAGTCGACATGGCTGACGCCGCCCACCAGGAGTTCGCCCGCC
GGCTGGCCCTTTTCTCTATCAACGTGTACGGCAAGCTGTCGGGGCAGAAG
CCCGGCGAGAACATCGTCTTCTCGCCCTTTTCCATCCAGACTTGTGCGGC
GATGGCCAGGCTGGGTGCAGAAAACGAGACGGCTACCCAGCTGGACCAGG
GACTGGGCTTGGCCTCTAGTGACCCAGAGCAAATCGCACACAGTTTTCAC
CAGGTGCTGGCCGCCTACCAGGACAGTCAGATCTTGCGCATCGCCAACAA
GATTTTCGTCATGGATGGCTACCAGCTGCGCCAGGAGTTTGATCAGCTGT
TATCCAAGCAGTTCCTCTCGGCGGCTCAGAGCGTGGACTTTTCCAAAAAT
GTACAAGCAGCGGCCACCATCAACAATTGGGTTGAGCAGCGCACCAACCA
TCTGATCAAGGACCTTGTGCCGGCTGATGTATTGAACTCCGAATCGCGAC
TCGTCCTTGTGAACGCCATTCACTTCAAGGGCACCTGGCAGCACCAGTTC
GCCAAACACTTAACCCGCCCAGACACCTTTCACCTGGATGGGGAGCGAAC
AGTTCAGGTTCCGATGATGAGTTTAAAGGAGCGGTTCCGCTACGCCGATC
TGCCGGCGCTAGATGCCATGGCTCTGGAACTGCCCTACAAGGACTCAGAC
CTCTCTATGCTGATCGTACTGCCCAACACCAAGACGGGTCTGCCCGCTCT
GGAGGAGAAGTTGCGCCTCACGACCCTCTCGCAGATCACGCAGTCGTTGT
ACGAAACAAAGGTAGCGCTCAAATTGCCCAGGTTCAAGGCAGAGTTCCAA
GTGGAATTGTCTGAGGTTTTCCAGAAGCTGGGCATGTCAAGGATGTTCTC
CGATCAGGCTGAATTTGGAAAAATGCTACAAAGTCCGGAGCCATTGAAAG
TGTCAGCCATCATACACAAGGCCTTCATTGAAGTCAACGAGGAGGGAACG
GAGGCTGCGGCCGCCACGGGAATGGTCATGTGCTACGCCTCCATGCTCAC
GTTCGAACCGCAGCCCGTCCAATTCCATGTCCAGCATCCATTTAACTATT
ACATTATCAATAAGGATTCTACTATTTTGTTTGCGGGAAGAATCAATAAG
TTTGCAAGCTTTCTAGACCAT
BO18206.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:53:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spn42Da-RF | 1236 | CG9453-PF | 96..1233 | 16..1153 | 5690 | 100 | Plus |
Spn42Da-RE | 1236 | CG9453-PE | 96..1233 | 16..1153 | 5690 | 100 | Plus |
Spn42Da-RL | 1140 | CG9453-PL | 1..1137 | 17..1153 | 5685 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:53:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spn42Da-RL | 2155 | CG9453-RL | 640..1777 | 16..1153 | 5690 | 100 | Plus |
Spn42Da-RK | 1789 | CG9453-RK | 274..1411 | 16..1153 | 5690 | 100 | Plus |
Spn42Da-RH | 1763 | CG9453-RH | 274..1411 | 16..1153 | 5690 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:53:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6877427..6878288 | 877..16 | 4310 | 100 | Minus |
2R | 25286936 | 2R | 6877220..6877364 | 1020..876 | 725 | 100 | Minus |
2R | 25286936 | 2R | 6876600..6876734 | 1153..1019 | 675 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 00:53:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy4 | 6852 | gypsy4 GYPSY4 6852bp | 3903..3966 | 1106..1171 | 118 | 66.7 | Plus |
BO18206.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-25 14:45:43 Download gff for
BO18206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn4-RH | 275..1411 | 17..1155 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:37:35 Download gff for
BO18206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn42Da-RH | 275..1411 | 17..1155 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:12:42 Download gff for
BO18206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn42Da-RH | 275..1411 | 17..1155 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:12:42 Download gff for
BO18206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6876597..6876733 | 1020..1155 | 98 | <- | Minus |
2R | 6877221..6877362 | 878..1019 | 100 | <- | Minus |
2R | 6877427..6878287 | 17..877 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:37:35 Download gff for
BO18206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2764102..2764238 | 1020..1155 | 98 | <- | Minus |
arm_2R | 2764726..2764867 | 878..1019 | 100 | <- | Minus |
arm_2R | 2764932..2765792 | 17..877 | 100 | | Minus |
BO18206.pep Sequence
Translation from 16 to 1171
> BO18206.pep
MADAAHQEFARRLALFSINVYGKLSGQKPGENIVFSPFSIQTCAAMARLG
AENETATQLDQGLGLASSDPEQIAHSFHQVLAAYQDSQILRIANKIFVMD
GYQLRQEFDQLLSKQFLSAAQSVDFSKNVQAAATINNWVEQRTNHLIKDL
VPADVLNSESRLVLVNAIHFKGTWQHQFAKHLTRPDTFHLDGERTVQVPM
MSLKERFRYADLPALDAMALELPYKDSDLSMLIVLPNTKTGLPALEEKLR
LTTLSQITQSLYETKVALKLPRFKAEFQVELSEVFQKLGMSRMFSDQAEF
GKMLQSPEPLKVSAIIHKAFIEVNEEGTEAAAATGMVMCYASMLTFEPQP
VQFHVQHPFNYYIINKDSTILFAGRINKFASFLDH
BO18206.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:04:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spn42Da-PL | 379 | CG9453-PL | 1..379 | 1..379 | 1921 | 100 | Plus |
Spn42Da-PK | 379 | CG9453-PK | 1..379 | 1..379 | 1921 | 100 | Plus |
Spn42Da-PH | 379 | CG9453-PH | 1..379 | 1..379 | 1921 | 100 | Plus |
Spn42Da-PF | 411 | CG9453-PF | 33..411 | 1..379 | 1921 | 100 | Plus |
Spn42Da-PE | 411 | CG9453-PE | 33..411 | 1..379 | 1921 | 100 | Plus |