Clone BO18206 Report

Search the DGRC for BO18206

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:182
Well:6
Vector:pDNR-Dual
Associated Gene/TranscriptSpn4-RH
Protein status:BO18206.pep: full length peptide match
Sequenced Size:1171

Clone Sequence Records

BO18206.5prime Sequence

540 bp (458 high quality bases) assembled on 2006-10-13

> BO18206.5prime
GAAGTTATCATTCGACATGGCTGACGCCGCCCACCAGGAGTTCGCCCGCC
GGCTGGCCCTTTTCTCTATCAACGTGTACGGCAAGCTGTCGGGGCAGAAG
CCCGGCGAGAACATCGTCTTCTCGCCCTTTTCCATCCAGACTTGTGCGGC
GATGGCCAGGCTGGGTGCAGAAAACGAGACGGCTACCCAGCTGGACCAGG
GACTGGGCTTGGCCTCTAGTGACCCAGAGCAAATCGCACACAGTTTTCAC
CAAGTGCTGGCCGCCTACCATGACAGTCAGATCTTGCGCATCGCCAACAA
GATTTTCGTCATGGATGGCTACCAGCTGCGCCAGGAGTTTGATCAGCTGT
TATCCAAGCAGTTCCTCTCGGCGGCTCAGAGCGTGGACTTTTCCAAAAAT
GTACAAGCAGCGGCCACCATCAACAATTGGGTTGAGCAGCGCACCAACCA
TCTGATCAAGGAACTTGTGTCGGCTGATGTATTGAACTCCGAATCTCGAC
TCGTCCTTGTGAAACGCATTCACTTTCAGGGCACCTGGCA

BO18206.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:12:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG9453-PC 1257 Spn4-RC 117..641 16..540 2375 98 Plus
CG9453-PB 1275 Spn4-RB 96..620 16..540 2375 98 Plus
CG9453-PD 1236 Spn4-RD 96..620 16..540 2375 98 Plus
CG9453-PE 1236 Spn4-RE 96..620 16..540 2375 98 Plus
CG9453-PF 1236 Spn4-RF 96..620 16..540 2375 98 Plus
CG9453-PI 1221 Spn4-RI 96..620 16..540 2375 98 Plus
CG9453-PA 1179 Spn4-RA 1..524 17..540 2370 98 Plus
CG9453-PG 1140 Spn4-RG 1..524 17..540 2370 98 Plus
CG9453-PH 1140 Spn4-RH 1..524 17..540 2370 98 Plus
CG9453-PJ 1125 Spn4-RJ 1..524 17..540 2370 98 Plus
CG9453-PK 1140 Spn4-RK 1..524 17..540 2370 98 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:16:29
Subject Length Description Subject Range Query Range Score Percent Strand
Spn42Da-RL 2155 CG9453-RL 640..1164 16..540 2475 98.3 Plus
Spn42Da-RK 1789 CG9453-RK 274..798 16..540 2475 98.3 Plus
Spn42Da-RJ 1490 CG9453-RJ 274..798 16..540 2475 98.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:16:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6877764..6878288 540..16 2475 98.1 Minus
Blast to na_te.dros performed on 2015-02-12 11:16:27 has no hits.

BO18206.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:19:52 Download gff for BO18206.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9453-PE 92..619 8..539 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:36:03 Download gff for BO18206.5prime
Subject Subject Range Query Range Percent Splice Strand
Spn42Da-RJ 270..797 8..539 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:29:09 Download gff for BO18206.5prime
Subject Subject Range Query Range Percent Splice Strand
Spn42Da-RJ 270..797 8..539 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:29:09 Download gff for BO18206.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 6877765..6878292 8..539 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:36:03 Download gff for BO18206.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2765270..2765797 8..539 97   Minus

BO18206.complete Sequence

1171 bp assembled on 2010-06-25

GenBank Submission: KX798128

> BO18206.complete
GAAGTTATCAGTCGACATGGCTGACGCCGCCCACCAGGAGTTCGCCCGCC
GGCTGGCCCTTTTCTCTATCAACGTGTACGGCAAGCTGTCGGGGCAGAAG
CCCGGCGAGAACATCGTCTTCTCGCCCTTTTCCATCCAGACTTGTGCGGC
GATGGCCAGGCTGGGTGCAGAAAACGAGACGGCTACCCAGCTGGACCAGG
GACTGGGCTTGGCCTCTAGTGACCCAGAGCAAATCGCACACAGTTTTCAC
CAGGTGCTGGCCGCCTACCAGGACAGTCAGATCTTGCGCATCGCCAACAA
GATTTTCGTCATGGATGGCTACCAGCTGCGCCAGGAGTTTGATCAGCTGT
TATCCAAGCAGTTCCTCTCGGCGGCTCAGAGCGTGGACTTTTCCAAAAAT
GTACAAGCAGCGGCCACCATCAACAATTGGGTTGAGCAGCGCACCAACCA
TCTGATCAAGGACCTTGTGCCGGCTGATGTATTGAACTCCGAATCGCGAC
TCGTCCTTGTGAACGCCATTCACTTCAAGGGCACCTGGCAGCACCAGTTC
GCCAAACACTTAACCCGCCCAGACACCTTTCACCTGGATGGGGAGCGAAC
AGTTCAGGTTCCGATGATGAGTTTAAAGGAGCGGTTCCGCTACGCCGATC
TGCCGGCGCTAGATGCCATGGCTCTGGAACTGCCCTACAAGGACTCAGAC
CTCTCTATGCTGATCGTACTGCCCAACACCAAGACGGGTCTGCCCGCTCT
GGAGGAGAAGTTGCGCCTCACGACCCTCTCGCAGATCACGCAGTCGTTGT
ACGAAACAAAGGTAGCGCTCAAATTGCCCAGGTTCAAGGCAGAGTTCCAA
GTGGAATTGTCTGAGGTTTTCCAGAAGCTGGGCATGTCAAGGATGTTCTC
CGATCAGGCTGAATTTGGAAAAATGCTACAAAGTCCGGAGCCATTGAAAG
TGTCAGCCATCATACACAAGGCCTTCATTGAAGTCAACGAGGAGGGAACG
GAGGCTGCGGCCGCCACGGGAATGGTCATGTGCTACGCCTCCATGCTCAC
GTTCGAACCGCAGCCCGTCCAATTCCATGTCCAGCATCCATTTAACTATT
ACATTATCAATAAGGATTCTACTATTTTGTTTGCGGGAAGAATCAATAAG
TTTGCAAGCTTTCTAGACCAT

BO18206.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:53:30
Subject Length Description Subject Range Query Range Score Percent Strand
Spn42Da-RF 1236 CG9453-PF 96..1233 16..1153 5690 100 Plus
Spn42Da-RE 1236 CG9453-PE 96..1233 16..1153 5690 100 Plus
Spn42Da-RL 1140 CG9453-PL 1..1137 17..1153 5685 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:53:31
Subject Length Description Subject Range Query Range Score Percent Strand
Spn42Da-RL 2155 CG9453-RL 640..1777 16..1153 5690 100 Plus
Spn42Da-RK 1789 CG9453-RK 274..1411 16..1153 5690 100 Plus
Spn42Da-RH 1763 CG9453-RH 274..1411 16..1153 5690 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:53:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6877427..6878288 877..16 4310 100 Minus
2R 25286936 2R 6877220..6877364 1020..876 725 100 Minus
2R 25286936 2R 6876600..6876734 1153..1019 675 100 Minus
Blast to na_te.dros performed 2014-11-27 00:53:29
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy4 6852 gypsy4 GYPSY4 6852bp 3903..3966 1106..1171 118 66.7 Plus

BO18206.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-06-25 14:45:43 Download gff for BO18206.complete
Subject Subject Range Query Range Percent Splice Strand
Spn4-RH 275..1411 17..1155 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:37:35 Download gff for BO18206.complete
Subject Subject Range Query Range Percent Splice Strand
Spn42Da-RH 275..1411 17..1155 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:12:42 Download gff for BO18206.complete
Subject Subject Range Query Range Percent Splice Strand
Spn42Da-RH 275..1411 17..1155 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:12:42 Download gff for BO18206.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6876597..6876733 1020..1155 98 <- Minus
2R 6877221..6877362 878..1019 100 <- Minus
2R 6877427..6878287 17..877 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:37:35 Download gff for BO18206.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2764102..2764238 1020..1155 98 <- Minus
arm_2R 2764726..2764867 878..1019 100 <- Minus
arm_2R 2764932..2765792 17..877 100   Minus

BO18206.pep Sequence

Translation from 16 to 1171

> BO18206.pep
MADAAHQEFARRLALFSINVYGKLSGQKPGENIVFSPFSIQTCAAMARLG
AENETATQLDQGLGLASSDPEQIAHSFHQVLAAYQDSQILRIANKIFVMD
GYQLRQEFDQLLSKQFLSAAQSVDFSKNVQAAATINNWVEQRTNHLIKDL
VPADVLNSESRLVLVNAIHFKGTWQHQFAKHLTRPDTFHLDGERTVQVPM
MSLKERFRYADLPALDAMALELPYKDSDLSMLIVLPNTKTGLPALEEKLR
LTTLSQITQSLYETKVALKLPRFKAEFQVELSEVFQKLGMSRMFSDQAEF
GKMLQSPEPLKVSAIIHKAFIEVNEEGTEAAAATGMVMCYASMLTFEPQP
VQFHVQHPFNYYIINKDSTILFAGRINKFASFLDH

BO18206.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:04:14
Subject Length Description Subject Range Query Range Score Percent Strand
Spn42Da-PL 379 CG9453-PL 1..379 1..379 1921 100 Plus
Spn42Da-PK 379 CG9453-PK 1..379 1..379 1921 100 Plus
Spn42Da-PH 379 CG9453-PH 1..379 1..379 1921 100 Plus
Spn42Da-PF 411 CG9453-PF 33..411 1..379 1921 100 Plus
Spn42Da-PE 411 CG9453-PE 33..411 1..379 1921 100 Plus