Clone Sequence Records
BO18207.3prime Sequence
760 bp (714 high quality bases) assembled on 2006-10-13
> BO18207.3prime
ATGGTCTAGAAAGCTTGCTATGCCTCCCAATAAGGAGGAAGACGCAGAGT
CTACTGGAGACATGGACTCTTCATAGCTCAGAAAGTTGTTCAGATAGGTT
AACCAGTCCGACACATCGACCTCCTTGTAAACTTCGTTTTGAAGGAGTTG
TCGCAAAACTCTCATTTGTCTCACATCCTCGCCATAGCGCACACACATCT
TGGCCATATTGATACTGGCCACCGGCAGGTTCACCTTTTCCCGACCTGTA
ATTACTTTGGTGCTCATGCGCTCCTTCCAGGTGTGTACCTCCTCCTCCAA
CGCATCGAGCCTGAACACCTTCGGCGCCTCGCGCACAACTCTTCCCACAG
GACTGATCCTCGCAGTCAACGGCTGCACGAGCTCCTTACTCATTAGGTAC
TTCCAAAAGCCTCCAAGATTTAACCACTTGTCATAGTCTTTTAAGGCGCT
AAGGAGTAATGCTAGGTAATCCTCACGCGACAACTGCTCGTCATCGTCAT
CCTCAATCTCACTTTTAAGATTGTACTTTACCCATTGACGCGCTCTAAAT
TCTCCGACCACCTTTTCCGGTCCAAAATGAGTTTTTTTGGGAAAGAAAAA
GAGCTTCAAAAAGTGGTCTGTGAACTCGAAGCGGAGATATGGGGGGTCCA
ACTGCCGAATAGCCATTAGGTAGGTGCGAACCTTTTTGCGATTGTGCGAT
TTAAAAATCTTGAAGAAGTCTTCGATGAGCAGATGGGTTTGGGGTCCCAT
ACTAGGATAT
BO18207.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:12:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5664-PA | 2136 | CG5664-RA | 1392..2133 | 760..19 | 3710 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 13:39:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5664-RB | 2630 | CG5664-RB | 1595..2336 | 760..19 | 3710 | 100 | Minus |
| CG5664-RA | 2621 | CG5664-RA | 1586..2327 | 760..19 | 3710 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 13:39:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21438922..21439663 | 19..760 | 3710 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 13:39:57 has no hits.
BO18207.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:19:52 Download gff for
BO18207.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5664-PA | 1392..2136 | 16..760 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:46:40 Download gff for
BO18207.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5664-RA | 1586..2327 | 19..760 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:41:43 Download gff for
BO18207.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5664-RA | 1586..2327 | 19..760 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 15:41:43 Download gff for
BO18207.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21438922..21439663 | 19..760 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:46:40 Download gff for
BO18207.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21432022..21432763 | 19..760 | 100 | | Plus |
BO18207.5prime Sequence
865 bp (797 high quality bases) assembled on 2006-10-13
> BO18207.5prime
GAAGTTATCAGTCGACATGGGTTCCAACGGCGAAGAATTATTGAATTTCG
CAATGAACTCAGACAGCGTAAATACCATAAATTCAACAGCGGACGTCGCA
GAAATTGTCTTAGACACTAATTTAGAGTTCAACAAGACGATTCCTTTTCA
TCTGCCTCAGGAGTCGGACGTGGAAATGGTCTCTGTCAGATCAGCTGCCG
AACCTGATCCTAACAAATCAGATTCCAAAGCAAGTAATAAATCAGATTCC
AAATTAGATGGTAAATCGATATTAGAGTCAGGAACCAAACCTCAGGCGGC
CCCGGGGGAGGTTTTCGCTAGGAAGGCATGCCTCAAGAGGACCAACGAAT
ATCCTGCTCCGCTGAATCATACTCTCAAGAAACTGAACTGGAAGTTTAAC
CTGCGTATATTGATCTCAAATCTGTACATGAAGAGCGAGGATCGTCTTCC
GGGAGCTTGTGTTTCCAGGTGTCTTTACAATACTAGTCTGTGCACGCAAA
GACATCGGTGCTCCGCGCTTCCGGATGGCCCAAACTTTGCGGCCGTTCAG
GCGCTACGAACCACGTTGCACGGCCAGCACTACGATACATTCCTGGACAT
TCTGGAGATGATGGTGTTGCAGGGTGTCTACCCAGGCGAAGGAGTCTTTG
ACAGACTAATAGATATGGCCATGATCCTAATTGCCAAAGAGATAAGCGTA
AAGGAGCTTGGCGACATCTACAACAAACTTATACGCACCTTTTTTCTTTT
GGTCGACGCCTTTCCCCCGTGCTGGACAGCCCTGCGTCCTTACTACTTGG
AGTTTCTGGGCGTCTCGCATCCCCCCTTGCGAGAAACACGTTCAACCAAT
TCTACCCAGAAGTTG
BO18207.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:12:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5664-PA | 2136 | CG5664-RA | 1..849 | 17..865 | 4170 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:20:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5664-RB | 2630 | CG5664-RB | 195..1043 | 17..865 | 4200 | 99.8 | Plus |
| CG5664-RA | 2621 | CG5664-RA | 195..1043 | 17..865 | 4200 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:20:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21440513..21441169 | 673..17 | 3285 | 100 | Minus |
| 3L | 28110227 | 3L | 21440263..21440455 | 865..673 | 920 | 98.4 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:20:33 has no hits.
BO18207.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:19:53 Download gff for
BO18207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5664-PA | 1..849 | 17..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:35:14 Download gff for
BO18207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5664-RA | 195..1043 | 17..865 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:36:45 Download gff for
BO18207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5664-RA | 195..1043 | 17..865 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:36:45 Download gff for
BO18207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21440263..21440454 | 674..865 | 98 | <- | Minus |
| 3L | 21440513..21441169 | 17..673 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:35:14 Download gff for
BO18207.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21433363..21433554 | 674..865 | 98 | <- | Minus |
| arm_3L | 21433613..21434269 | 17..673 | 100 | | Minus |
BO18207.complete Sequence
2167 bp assembled on 2007-03-23
GenBank Submission: FJ638761
> BO18207.complete
GAAGTTATCAGTCGACATGGGTTCCAACGGCGAAGAATTATTGAATTTCG
CAATGAACTCAGACAGCGTAAATACCATAAATTCAACAGCGGACGTCGCA
GAAATTGTCTTAGACACTAATTTAGAGTTCAACAAGACGATTCCTTTTCA
TCTGCCTCAGGAGTCGGACGTGGAAATGGTCTCTGTCAGATCAGCTGCCG
AACCTGATCCTAACAAATCAGATTCCAAAGCAAGTAATAAATCAGATTCC
AAATTAGATGGTAAATCGATATTAGAGTCAGGAACCAAACCTCAGGCGGC
CCCGGGGGAGGTTTTCGCTAGGAAGGCATGCCTCAAGAGGACCAACGAAT
ATCCTGCTCCGCTGAATCATACTCTCAAGAAACTGAACTGGAAGTTTAAC
CTGCGTATATTGATCTCAAATCTGTACATGAAGAGCGAGGATCGTCTTCC
GGGAGCTTGTGTTTCCAGGTGTCTTTACAATACTAGTCTGTGCACGCAAA
GACATCGGTGCTCCGCGCTTCCGGATGGCCCAAACTTTGCGGCCGTTCAG
GCGCTACGAACCACGTTGCACGGCCAGCACTACGATACATTCCTGGACAT
TCTGGAGATGATGGTGTTGCAGGGTGTCTACCCAGGCGAAGGAGTCTTTG
ACAGACTAATAGATATGGCCATGATCCTAATTGCCAAAGAGATAAGCGTA
AAGGAGCTTGGCGACATCTACAACAAACTTATACGCACCTTTTTTCTTTT
GGTCGACGCCTTTCCCCCGTGCTGGACAGCCCTGCGTCCTTACTACTTGA
GTTTTCTGGGCGTCTCGCATCCCCCCTTGCGAGAAACACGTTCAACCAAT
TCTACCCAGAAGTTGCAGTTTTACATCGATCTTTTTGAGGAAAATCTAAC
GCATTGCAGCGATGAAGAGATACGTGAAAACACCAAATTCTATGAAAAGT
TTGTGTTTAACTTCTCGGAAGAGGAGGATGCGAATATGTCCCAGGAAACG
GTCTTTCTGCGACATGTACAGCAGTATGACTGGCAGAGTGGGAAGCTTTG
TCTGGACGACTTCAAGAGAATGTCGCCCGCAGTCCGCTTGGCACGGCTCT
GCGATGTCCTGAACATGCTCACATGTGTACTGGAAATAGAGTTCCTCTCC
TGGCTGGATCATAACAGGTTGAGGCAGTCGGAGTCGGAGCTGTTTCAGGA
AAACTCCAGGTCATTTGCCTCGATCGTATTTGAAATGTCAGCAGGAACGC
GTCTCAGCGACATCGTTAAACAAATTATGAGTCTGTATGGACAGGTAGTG
GCCAAGTCCATGTACCCAGAACGCCAGAGGATTCTCCAGCGCCTTGTTTC
CCTAATTGTCGAAGTAAGCAACACGGCAGAGCTAAAGTACGAGGATAATG
CTGTGATATATCCTAGTATGGGACCCCAAACCCATCTGCTCATCGAAGAC
TTCTTCAAGATTTTTAAATCGCACAATCGCAAAAAGGTTCGCACCTACCT
AATGGCTATTCGGCAGTTGGACCCCCCATATCTCCGCTTCGAGTTCACAG
ACCACTTTTTGAAGCTCTTTTTCTTTCCCAAAAAAACTCATTTTGGACCG
GAAAAGGTGGTCGGAGAATTTAGAGCGCGTCAATGGGTAAAGTACAATCT
TAAAAGTGAGATTGAGGATGACGATGACGAGCAGTTGTCGCGTGAGGATT
ACCTAGCATTACTCCTTAGCGCCTTAAAAGACTATGACAAGTGGTTAAAT
CTTGGAGGCTTTTGGAAGTACCTAATGAGTAAGGAGCTCGTGCAGCCGTT
GACTGCGAGGATCAGTCCTGTGGGAAGAGTTGTGCGCGAGGCGCCGAAGG
TGTTCAGGCTCGATGCGTTGGAGGAGGAGGTACACACCTGGAAGGAGCGC
ATGAGCACCAAAGTAATTACAGGTCGGGAAAAGGTGAACCTGCCGGTGGC
CAGTATCAATATGGCCAAGATGTGTGTGCGCTATGGCGAGGATGTGAGAC
AAATGAGAGTTTTGCGACAACTCCTTCAAAACGAAGTTTACAAGGAGGTC
GATGTGTCGGACTGGTTAACCTATCTGAACAACTTTCTGAGCTATGAAGA
GTCCATGTCTCCAGTAGACTCTGCGTCTTCCTCCTTATTGGGAGGCATAG
CAAGCTTTCTAGACCAT
BO18207.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:18:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5664-RA | 2136 | CG5664-PA | 1..2133 | 17..2149 | 10665 | 100 | Plus |
| CG5664-RB | 1332 | CG5664-PB | 1..1323 | 17..1339 | 6615 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:18:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5664-RA | 2621 | CG5664-RA | 195..2327 | 17..2149 | 10665 | 100 | Plus |
| CG5664-RB | 2630 | CG5664-RB | 195..2336 | 17..2149 | 10540 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:18:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21438922..21439733 | 2149..1338 | 4060 | 100 | Minus |
| 3L | 28110227 | 3L | 21439789..21440455 | 1339..673 | 3335 | 100 | Minus |
| 3L | 28110227 | 3L | 21440513..21441169 | 673..17 | 3285 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:18:22 has no hits.
BO18207.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:09:01 Download gff for
BO18207.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5664-RA | 1..2136 | 17..2152 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:25:59 Download gff for
BO18207.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5664-RA | 155..2287 | 17..2149 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:57:29 Download gff for
BO18207.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5664-RA | 195..2327 | 17..2151 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:09:02 Download gff for
BO18207.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5664-RA | 155..2287 | 17..2149 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:16:02 Download gff for
BO18207.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5664-RA | 195..2327 | 17..2151 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:16:02 Download gff for
BO18207.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21438919..21439731 | 1340..2151 | 99 | <- | Minus |
| 3L | 21439789..21440454 | 674..1339 | 100 | <- | Minus |
| 3L | 21440513..21441169 | 17..673 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:57:29 Download gff for
BO18207.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21432019..21432831 | 1340..2151 | 99 | <- | Minus |
| arm_3L | 21432889..21433554 | 674..1339 | 100 | <- | Minus |
| arm_3L | 21433613..21434269 | 17..673 | 100 | | Minus |
BO18207.pep Sequence
Translation from 16 to 2167
> BO18207.pep
MGSNGEELLNFAMNSDSVNTINSTADVAEIVLDTNLEFNKTIPFHLPQES
DVEMVSVRSAAEPDPNKSDSKASNKSDSKLDGKSILESGTKPQAAPGEVF
ARKACLKRTNEYPAPLNHTLKKLNWKFNLRILISNLYMKSEDRLPGACVS
RCLYNTSLCTQRHRCSALPDGPNFAAVQALRTTLHGQHYDTFLDILEMMV
LQGVYPGEGVFDRLIDMAMILIAKEISVKELGDIYNKLIRTFFLLVDAFP
PCWTALRPYYLSFLGVSHPPLRETRSTNSTQKLQFYIDLFEENLTHCSDE
EIRENTKFYEKFVFNFSEEEDANMSQETVFLRHVQQYDWQSGKLCLDDFK
RMSPAVRLARLCDVLNMLTCVLEIEFLSWLDHNRLRQSESELFQENSRSF
ASIVFEMSAGTRLSDIVKQIMSLYGQVVAKSMYPERQRILQRLVSLIVEV
SNTAELKYEDNAVIYPSMGPQTHLLIEDFFKIFKSHNRKKVRTYLMAIRQ
LDPPYLRFEFTDHFLKLFFFPKKTHFGPEKVVGEFRARQWVKYNLKSEIE
DDDDEQLSREDYLALLLSALKDYDKWLNLGGFWKYLMSKELVQPLTARIS
PVGRVVREAPKVFRLDALEEEVHTWKERMSTKVITGREKVNLPVASINMA
KMCVRYGEDVRQMRVLRQLLQNEVYKEVDVSDWLTYLNNFLSYEESMSPV
DSASSSLLGGIASFLDH
BO18207.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:46:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5664-PA | 711 | CG5664-PA | 1..711 | 1..711 | 3686 | 100 | Plus |
| CG5664-PB | 443 | CG5664-PB | 1..441 | 1..441 | 2289 | 100 | Plus |
