Clone BO18209 Report

Search the DGRC for BO18209

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:182
Well:9
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO18209.pep: validated full length
Sequenced Size:1942

Clone Sequence Records

BO18209.3prime Sequence

759 bp (706 high quality bases) assembled on 2006-10-13

> BO18209.3prime
ATGGTCTAGAAAGCTTGCGTAGATCCAGTTGACAGGCACCCACTGCTCCT
CGTGGCTCATCTGATCCAGCGTTTCCACCACCTGGCGGAACGTCTCATCG
AAGTCCTCGTTCACGATGACCATGTCGAAGTATTTCTCATACTTGCGCTG
GACGAAGCTGCTCTCCTCGACGGTGGCGACAAGGTCGTCGTCCTCATACA
ACGACGCTAGGGACTCGAGCGTACGGGCGCGTCTGGAGCTGAATCTTATG
GAACTCTGGCGATCAAAAGATAAATTCCGGTTGGAGCCCGTGGCCCTGCG
ATCCGCATAGATGGTCTTGAGCTGCTCCATGCCAGGCGCTGCCACAAAGA
TGACAAAAGGCATCAGTTCCTGGCTGTTGTGCAGGATCTTCAGGGCATTC
GGTGCACAATCCAGGATGCACATGCGCCCACTGTTGATCACATCCTTGAT
GGACTGCAAATGCGTGCCGTACAGATTGCCATTGTGCTCGCCGTACTCCA
GGAACTCGTTGTTCCGCACGGCCTCTTCCATTTCCTCGCGGTCCATGAAC
CAGTAGCTACTGCCGTTCTCCTCCAAGGCGCGCTTGGGGCGACTGGTATG
TGGAATGACCGCTCCGAACTTGTCCACATCGCTGTTGATCAGCCGATTCT
TGAGCGTACGTCTTCCCACCCCGGAAACACCGATGAGAACCAGGGTTTTC
CTGCGGAACGGCGGCATCCGCGTGACCTCCTCATAAAGCAGCAGCTCCGC
CTTGTCGAA

BO18209.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:12:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG9326-PB 1911 CG9326-RB 1168..1908 759..19 3680 99.8 Minus
CG9326-PD 1848 CG9326-RD 1105..1845 759..19 3680 99.8 Minus
CG9326-PC 1410 CG9326-RC 667..1407 759..19 3680 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:16:45
Subject Length Description Subject Range Query Range Score Percent Strand
vari-RF 2379 CG9326-RF 1051..1791 759..19 3690 99.9 Minus
vari-RC 2320 CG9326-RC 992..1732 759..19 3690 99.9 Minus
vari-RD 2717 CG9326-RD 1389..2129 759..19 3690 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:16:40
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20789721..20790052 268..599 1660 100 Plus
2L 23513712 2L 20789250..20789425 19..194 880 100 Plus
2L 23513712 2L 20790125..20790284 600..759 785 99.4 Plus
2L 23513712 2L 20789585..20789660 192..267 380 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:16:43 has no hits.

BO18209.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:19:54 Download gff for BO18209.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9326-PC 669..1410 18..757 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:36:04 Download gff for BO18209.3prime
Subject Subject Range Query Range Percent Splice Strand
vari-RD 1389..2129 19..759 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:29:57 Download gff for BO18209.3prime
Subject Subject Range Query Range Percent Splice Strand
vari-RD 1389..2129 19..759 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:29:57 Download gff for BO18209.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 20789721..20790052 268..599 100 <- Plus
2L 20789586..20789660 193..267 100 <- Plus
2L 20790125..20790284 600..759 99   Plus
2L 20789250..20789423 19..192 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:36:04 Download gff for BO18209.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20789250..20789423 19..192 100 <- Plus
arm_2L 20789586..20789660 193..267 100 <- Plus
arm_2L 20789721..20790052 268..599 100 <- Plus
arm_2L 20790125..20790284 600..759 99   Plus

BO18209.5prime Sequence

684 bp (614 high quality bases) assembled on 2006-10-13

> BO18209.5prime
GAAGTTATCAGTCGACATGGTTCGGTGGAGCGCGCGGTCGCGGCGCCAAG
CTCGCCAGGATAAAGTGGAGCTATTGGCCAGAAACAACAAAGTGAATGGC
GAGGACGATACCTCCGATAACGCCGCCTTTCGCAACTCGACTGACCTATC
CGACCACGATGAGATCTTCCTCAAGGGATTGCTGGGTAGTAGCTCCAACA
CGCCCCACAAGGAACTGATGCTGAATCCGACCGAGCCGCAGCCAGTGCCA
CTATTCCTGCCCGCTCATCTGAACAACAAGCCCATCTGCGACGACATCAT
CCGCAAGTTCTCACCCTCGAGGCGCCTGGAGTCGCGAGAGCTCGCCAAGC
TTCTCGCCCAGCCGCATTTTCGTGCTCTTTTGCGCGCCCATGATGAGATA
GGAGCACTCTACGAGCAACGACTTAAAGCTGCCGGGGGATCCACCAGCCA
ACTAGAGATCGCCAGCCAACGCCAAACGGGAGGCTACCTGTTCACCGAGG
ACGTCCTCAACACCAAGATGCCAGTGGAGACCATCAAGATGGTGGGTCTG
CGCCGAGATCCCAGCAAGCCGCTGGGCCTGACCGTCGAACTGGACGAATT
CAAGCAGCTGGTCGTGGCCCGGATTCTGGCGGGCGGGGTGATCGACAAAC
AGAGCATGCTGCACGTTGGCGATGTCATCCTAAA

BO18209.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:12:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG9326-PB 1911 CG9326-RB 1..666 17..682 3255 99.5 Plus
CG9326-PD 1848 CG9326-RD 1..666 17..682 3255 99.5 Plus
CG9326-PC 1410 CG9326-RC 1..165 518..682 800 99.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:20:48
Subject Length Description Subject Range Query Range Score Percent Strand
vari-RE 2535 CG9326-RE 285..950 17..682 3285 99.5 Plus
vari-RD 2717 CG9326-RD 285..950 17..682 3285 99.5 Plus
vari-RB 2610 CG9326-RB 285..950 17..682 3285 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:20:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20791356..20791664 682..374 1530 99.7 Minus
2L 23513712 2L 20792113..20792267 374..220 775 100 Minus
2L 23513712 2L 20796653..20796758 122..17 530 100 Minus
2L 23513712 2L 20796037..20796135 220..122 465 98 Minus
Blast to na_te.dros performed on 2015-02-13 07:20:46 has no hits.

BO18209.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:19:55 Download gff for BO18209.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9326-PD 1..665 17..681 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:35:18 Download gff for BO18209.5prime
Subject Subject Range Query Range Percent Splice Strand
vari-RB 276..949 8..681 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:37:20 Download gff for BO18209.5prime
Subject Subject Range Query Range Percent Splice Strand
vari-RB 276..949 8..681 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:37:20 Download gff for BO18209.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 20791357..20791664 374..681 99 <- Minus
2L 20792114..20792266 221..373 100 <- Minus
2L 20796037..20796134 123..220 97 <- Minus
2L 20796653..20796767 8..122 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:35:18 Download gff for BO18209.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20791357..20791664 374..681 99 <- Minus
arm_2L 20792114..20792266 221..373 100 <- Minus
arm_2L 20796037..20796134 123..220 97 <- Minus
arm_2L 20796653..20796767 8..122 96   Minus

BO18209.complete Sequence

1942 bp assembled on 2006-12-18

GenBank Submission: FJ634342

> BO18209.complete
GAAGTTATCAGTCGACATGGTTCGGTGGAGCGCGCGGTCGCGGCGCCAAG
CTCGCCAGGATAAAGTGGAGCTATTGGCCAGAAACAACAAAGTGAATGGC
GAGGACGATACCTCCGATAACGCCGCCTTTCGCAACTCGACTGACCTATC
CGACCACGATGAGATCTTCCTCAAGGGATTGCTGGGTAGTAGCTCCAACA
CGCCCCACAAGGAACTGATGCTGAATCCGACCGAGCCGCAGCCAGTGCCA
CTATTCCTGCCCGCTCATCTGAACAACAAGCCCATCTGCGACGACATCAT
CCGCAAGTTCTCACCCTCGAGGCGCCTGGAGTCGCGAGAGCTCGCCAAGC
TTCTCGCCCAGCCGCATTTTCGTGCTCTTTTGCGCGCCCATGATGAGATA
GGAGCACTCTACGAGCAACGACTTAAAGCTGCCGGGGGATCCACCAGCCA
ACTAGAGATCGCCAGCCAACGCCAAACGGGAGGCTACCTGTTCACCGAGG
ACGTCCTCAACACCAAGATGCCAGTGGAGACCATCAAGATGGTGGGTCTG
CGCCGAGATCCCAGCAAGCCGCTGGGCCTGACCGTCGAACTGGACGAATT
CAAGCAGCTGGTCGTGGCCAGGATTCTGGCGGGCGGGGTGATCGACAAAC
AGAGCATGCTGCACGTTGGCGATGTCATCCTAGAGGTGAACGGTACGCCC
GTTCGCACTCCCGATGAGCTGCAGGTGGAGGTGTCGCGGGCCAAGGAGAA
TCTCACCCTCAAGATCGGGCCGAACGTGGACGAGGAGATCAAGAGCGGTC
GCTATACTGTGAGTGGGGGTCAGGTAAAACAGAATGGCATCGCGAGTCTC
GAGACGGGCAAGAAACTGACGTGCTACATGCGTGCCCTTTTCACATACAA
TCCATCCGAAGATTCCTTGCTGCCATGCAGGGATATTGGATTGCCCTTCA
AGTCGGGCGACATTTTGCAGATCATCAACGTAAAGGATCCCAACTGGTGG
CAGGCCAAGAACATTACTGCCGAATCTGACAAAATTGGACTCATACCATC
CCAAGAGCTGGAGGAGCGGCGCAAAGCCTTCGTGGCCCCCGAGGCGGACT
ACGTTCACAAGATTGGCATTTGCGGAACAAGAATCTCGAAGCGAAAGCGC
AAGACCATGTACCGATCTGTGGCCAATTGCGAGTTCGACAAGGCGGAGCT
GCTGCTCTATGAGGAGGTCACGCGGATGCCGCCGTTCCGCAGGAAAACCC
TGGTTCTCATCGGTGTTTCCGGGGTGGGAAGACGTACGCTCAAGAATCGG
CTGATCAACAGCGATGTGGACAAGTTCGGAGCGGTCATTCCACATACCAG
TCGCCCCAAGCGCGCCTTGGAGGAGAACGGCAGTAGCTACTGGTTCATGG
ACCGCGAGGAAATGGAAGAGGCCGTGCGGAACAACGAGTTCCTGGAGTAC
GGCGAGCACAATGGCAATCTGTACGGCACGCATTTGCAGTCCATCAAGGA
TGTGATCAACAGTGGGCGCATGTGCATCCTGGATTGTGCACCGAATGCCC
TGAAGATCCTGCACAACAGCCAGGAACTGATGCCTTTTGTCATCTTTGTG
GCAGCGCCTGGCATGGAGCAGCTCAAGACCATCTATGCGGATCGCAGGGC
CACGGGCTCCAACCGGAATTTATCTTTTGATCGCCAGAGTTCCATAAGAT
TCAGCTCCAGACGCGCCCGTACGCTCGAGTCCCTAGCGTCGTTGTATGAG
GACGACGACCTTGTCGCCACCGTCGAGGAGAGCAGCTTCGTCCAGCGCAA
GTATGAGAAATACTTCGACATGGTCATCGTGAACGAGGACTTCGATGAGA
CGTTCCGCCAGGTGGTGGAAACGCTGGATCAGATGAGCCACGAGGAGCAG
TGGGTGCCTGTCAACTGGATCTACGCAAGCTTTCTAGACCAT

BO18209.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:48:27
Subject Length Description Subject Range Query Range Score Percent Strand
vari-RB 1911 CG9326-PB 1..1908 17..1924 9510 99.9 Plus
vari-RE 1836 CG9326-PE 1..1659 17..1675 8265 99.9 Plus
vari-RF 1410 CG9326-PF 1..1407 518..1924 7035 100 Plus
vari-RE 1836 CG9326-PE 1660..1833 1751..1924 870 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:48:29
Subject Length Description Subject Range Query Range Score Percent Strand
vari-RB 2610 CG9326-RB 285..2192 17..1924 9510 99.9 Plus
vari-RC 2320 CG9326-RC 28..1732 220..1924 8525 100 Plus
vari-RF 2379 CG9326-RF 88..1791 221..1924 8520 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:48:24
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20791167..20791664 871..374 2490 100 Minus
2L 23513712 2L 20789721..20790052 1675..1344 1660 100 Minus
2L 23513712 2L 20790125..20790335 1343..1133 1055 100 Minus
2L 23513712 2L 20789250..20789425 1924..1749 880 100 Minus
2L 23513712 2L 20790391..20790558 1132..965 840 100 Minus
2L 23513712 2L 20792113..20792267 374..220 775 100 Minus
2L 23513712 2L 20796653..20796758 122..17 530 100 Minus
2L 23513712 2L 20790622..20790721 970..871 500 100 Minus
2L 23513712 2L 20796037..20796135 220..122 465 98 Minus
2L 23513712 2L 20789585..20789660 1751..1676 380 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:48:25 has no hits.

BO18209.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:57:04 Download gff for BO18209.complete
Subject Subject Range Query Range Percent Splice Strand
vari-RB 1..1911 17..1925 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:29:38 Download gff for BO18209.complete
Subject Subject Range Query Range Percent Splice Strand
vari-RB 274..2190 8..1924 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:59:57 Download gff for BO18209.complete
Subject Subject Range Query Range Percent Splice Strand
vari-RB 285..2192 17..1926 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:57:04 Download gff for BO18209.complete
Subject Subject Range Query Range Percent Splice Strand
vari-RB 274..2190 8..1924 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:51 Download gff for BO18209.complete
Subject Subject Range Query Range Percent Splice Strand
vari-RB 285..2192 17..1926 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:51 Download gff for BO18209.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20796037..20796134 123..220 97 <- Minus
2L 20796653..20796758 17..122 100   Minus
2L 20790125..20790335 1133..1343 100 <- Minus
2L 20790391..20790552 971..1132 100 <- Minus
2L 20790622..20790720 872..970 100 <- Minus
2L 20789586..20789660 1676..1750 100 <- Minus
2L 20789248..20789423 1751..1926 98 <- Minus
2L 20789721..20790052 1344..1675 100 <- Minus
2L 20791167..20791664 374..871 100 <- Minus
2L 20792114..20792266 221..373 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:59:57 Download gff for BO18209.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20789586..20789660 1676..1750 100 <- Minus
arm_2L 20789248..20789423 1751..1926 98 <- Minus
arm_2L 20789721..20790052 1344..1675 100 <- Minus
arm_2L 20790125..20790335 1133..1343 100 <- Minus
arm_2L 20790391..20790552 971..1132 100 <- Minus
arm_2L 20790622..20790720 872..970 100 <- Minus
arm_2L 20791167..20791664 374..871 100 <- Minus
arm_2L 20792114..20792266 221..373 100 <- Minus
arm_2L 20796037..20796134 123..220 97 <- Minus
arm_2L 20796653..20796758 17..122 100   Minus

BO18209.pep Sequence

Translation from 16 to 1942

> BO18209.pep
MVRWSARSRRQARQDKVELLARNNKVNGEDDTSDNAAFRNSTDLSDHDEI
FLKGLLGSSSNTPHKELMLNPTEPQPVPLFLPAHLNNKPICDDIIRKFSP
SRRLESRELAKLLAQPHFRALLRAHDEIGALYEQRLKAAGGSTSQLEIAS
QRQTGGYLFTEDVLNTKMPVETIKMVGLRRDPSKPLGLTVELDEFKQLVV
ARILAGGVIDKQSMLHVGDVILEVNGTPVRTPDELQVEVSRAKENLTLKI
GPNVDEEIKSGRYTVSGGQVKQNGIASLETGKKLTCYMRALFTYNPSEDS
LLPCRDIGLPFKSGDILQIINVKDPNWWQAKNITAESDKIGLIPSQELEE
RRKAFVAPEADYVHKIGICGTRISKRKRKTMYRSVANCEFDKAELLLYEE
VTRMPPFRRKTLVLIGVSGVGRRTLKNRLINSDVDKFGAVIPHTSRPKRA
LEENGSSYWFMDREEMEEAVRNNEFLEYGEHNGNLYGTHLQSIKDVINSG
RMCILDCAPNALKILHNSQELMPFVIFVAAPGMEQLKTIYADRRATGSNR
NLSFDRQSSIRFSSRRARTLESLASLYEDDDLVATVEESSFVQRKYEKYF
DMVIVNEDFDETFRQVVETLDQMSHEEQWVPVNWIYASFLDH

BO18209.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:21:03
Subject Length Description Subject Range Query Range Score Percent Strand
vari-PB 636 CG9326-PB 1..636 1..636 3263 99.7 Plus
vari-PD 615 CG9326-PD 1..615 1..636 3129 96.4 Plus
vari-PE 611 CG9326-PE 1..611 1..636 3109 95.8 Plus
vari-PF 469 CG9326-PF 1..469 168..636 2418 100 Plus
vari-PC 469 CG9326-PC 1..469 168..636 2418 100 Plus