Clone Sequence Records
BO18209.3prime Sequence
759 bp (706 high quality bases) assembled on 2006-10-13
> BO18209.3prime
ATGGTCTAGAAAGCTTGCGTAGATCCAGTTGACAGGCACCCACTGCTCCT
CGTGGCTCATCTGATCCAGCGTTTCCACCACCTGGCGGAACGTCTCATCG
AAGTCCTCGTTCACGATGACCATGTCGAAGTATTTCTCATACTTGCGCTG
GACGAAGCTGCTCTCCTCGACGGTGGCGACAAGGTCGTCGTCCTCATACA
ACGACGCTAGGGACTCGAGCGTACGGGCGCGTCTGGAGCTGAATCTTATG
GAACTCTGGCGATCAAAAGATAAATTCCGGTTGGAGCCCGTGGCCCTGCG
ATCCGCATAGATGGTCTTGAGCTGCTCCATGCCAGGCGCTGCCACAAAGA
TGACAAAAGGCATCAGTTCCTGGCTGTTGTGCAGGATCTTCAGGGCATTC
GGTGCACAATCCAGGATGCACATGCGCCCACTGTTGATCACATCCTTGAT
GGACTGCAAATGCGTGCCGTACAGATTGCCATTGTGCTCGCCGTACTCCA
GGAACTCGTTGTTCCGCACGGCCTCTTCCATTTCCTCGCGGTCCATGAAC
CAGTAGCTACTGCCGTTCTCCTCCAAGGCGCGCTTGGGGCGACTGGTATG
TGGAATGACCGCTCCGAACTTGTCCACATCGCTGTTGATCAGCCGATTCT
TGAGCGTACGTCTTCCCACCCCGGAAACACCGATGAGAACCAGGGTTTTC
CTGCGGAACGGCGGCATCCGCGTGACCTCCTCATAAAGCAGCAGCTCCGC
CTTGTCGAA
BO18209.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:12:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9326-PB | 1911 | CG9326-RB | 1168..1908 | 759..19 | 3680 | 99.8 | Minus |
CG9326-PD | 1848 | CG9326-RD | 1105..1845 | 759..19 | 3680 | 99.8 | Minus |
CG9326-PC | 1410 | CG9326-RC | 667..1407 | 759..19 | 3680 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:16:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
vari-RF | 2379 | CG9326-RF | 1051..1791 | 759..19 | 3690 | 99.9 | Minus |
vari-RC | 2320 | CG9326-RC | 992..1732 | 759..19 | 3690 | 99.9 | Minus |
vari-RD | 2717 | CG9326-RD | 1389..2129 | 759..19 | 3690 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:16:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20789721..20790052 | 268..599 | 1660 | 100 | Plus |
2L | 23513712 | 2L | 20789250..20789425 | 19..194 | 880 | 100 | Plus |
2L | 23513712 | 2L | 20790125..20790284 | 600..759 | 785 | 99.4 | Plus |
2L | 23513712 | 2L | 20789585..20789660 | 192..267 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:16:43 has no hits.
BO18209.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:19:54 Download gff for
BO18209.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9326-PC | 669..1410 | 18..757 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 21:36:04 Download gff for
BO18209.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vari-RD | 1389..2129 | 19..759 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:29:57 Download gff for
BO18209.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vari-RD | 1389..2129 | 19..759 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:29:57 Download gff for
BO18209.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20789721..20790052 | 268..599 | 100 | <- | Plus |
2L | 20789586..20789660 | 193..267 | 100 | <- | Plus |
2L | 20790125..20790284 | 600..759 | 99 | | Plus |
2L | 20789250..20789423 | 19..192 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 21:36:04 Download gff for
BO18209.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20789250..20789423 | 19..192 | 100 | <- | Plus |
arm_2L | 20789586..20789660 | 193..267 | 100 | <- | Plus |
arm_2L | 20789721..20790052 | 268..599 | 100 | <- | Plus |
arm_2L | 20790125..20790284 | 600..759 | 99 | | Plus |
BO18209.5prime Sequence
684 bp (614 high quality bases) assembled on 2006-10-13
> BO18209.5prime
GAAGTTATCAGTCGACATGGTTCGGTGGAGCGCGCGGTCGCGGCGCCAAG
CTCGCCAGGATAAAGTGGAGCTATTGGCCAGAAACAACAAAGTGAATGGC
GAGGACGATACCTCCGATAACGCCGCCTTTCGCAACTCGACTGACCTATC
CGACCACGATGAGATCTTCCTCAAGGGATTGCTGGGTAGTAGCTCCAACA
CGCCCCACAAGGAACTGATGCTGAATCCGACCGAGCCGCAGCCAGTGCCA
CTATTCCTGCCCGCTCATCTGAACAACAAGCCCATCTGCGACGACATCAT
CCGCAAGTTCTCACCCTCGAGGCGCCTGGAGTCGCGAGAGCTCGCCAAGC
TTCTCGCCCAGCCGCATTTTCGTGCTCTTTTGCGCGCCCATGATGAGATA
GGAGCACTCTACGAGCAACGACTTAAAGCTGCCGGGGGATCCACCAGCCA
ACTAGAGATCGCCAGCCAACGCCAAACGGGAGGCTACCTGTTCACCGAGG
ACGTCCTCAACACCAAGATGCCAGTGGAGACCATCAAGATGGTGGGTCTG
CGCCGAGATCCCAGCAAGCCGCTGGGCCTGACCGTCGAACTGGACGAATT
CAAGCAGCTGGTCGTGGCCCGGATTCTGGCGGGCGGGGTGATCGACAAAC
AGAGCATGCTGCACGTTGGCGATGTCATCCTAAA
BO18209.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:12:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9326-PB | 1911 | CG9326-RB | 1..666 | 17..682 | 3255 | 99.5 | Plus |
CG9326-PD | 1848 | CG9326-RD | 1..666 | 17..682 | 3255 | 99.5 | Plus |
CG9326-PC | 1410 | CG9326-RC | 1..165 | 518..682 | 800 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 07:20:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
vari-RE | 2535 | CG9326-RE | 285..950 | 17..682 | 3285 | 99.5 | Plus |
vari-RD | 2717 | CG9326-RD | 285..950 | 17..682 | 3285 | 99.5 | Plus |
vari-RB | 2610 | CG9326-RB | 285..950 | 17..682 | 3285 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 07:20:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20791356..20791664 | 682..374 | 1530 | 99.7 | Minus |
2L | 23513712 | 2L | 20792113..20792267 | 374..220 | 775 | 100 | Minus |
2L | 23513712 | 2L | 20796653..20796758 | 122..17 | 530 | 100 | Minus |
2L | 23513712 | 2L | 20796037..20796135 | 220..122 | 465 | 98 | Minus |
Blast to na_te.dros performed on 2015-02-13 07:20:46 has no hits.
BO18209.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:19:55 Download gff for
BO18209.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9326-PD | 1..665 | 17..681 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 21:35:18 Download gff for
BO18209.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vari-RB | 276..949 | 8..681 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:37:20 Download gff for
BO18209.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vari-RB | 276..949 | 8..681 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 09:37:20 Download gff for
BO18209.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20791357..20791664 | 374..681 | 99 | <- | Minus |
2L | 20792114..20792266 | 221..373 | 100 | <- | Minus |
2L | 20796037..20796134 | 123..220 | 97 | <- | Minus |
2L | 20796653..20796767 | 8..122 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 21:35:18 Download gff for
BO18209.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20791357..20791664 | 374..681 | 99 | <- | Minus |
arm_2L | 20792114..20792266 | 221..373 | 100 | <- | Minus |
arm_2L | 20796037..20796134 | 123..220 | 97 | <- | Minus |
arm_2L | 20796653..20796767 | 8..122 | 96 | | Minus |
BO18209.complete Sequence
1942 bp assembled on 2006-12-18
GenBank Submission: FJ634342
> BO18209.complete
GAAGTTATCAGTCGACATGGTTCGGTGGAGCGCGCGGTCGCGGCGCCAAG
CTCGCCAGGATAAAGTGGAGCTATTGGCCAGAAACAACAAAGTGAATGGC
GAGGACGATACCTCCGATAACGCCGCCTTTCGCAACTCGACTGACCTATC
CGACCACGATGAGATCTTCCTCAAGGGATTGCTGGGTAGTAGCTCCAACA
CGCCCCACAAGGAACTGATGCTGAATCCGACCGAGCCGCAGCCAGTGCCA
CTATTCCTGCCCGCTCATCTGAACAACAAGCCCATCTGCGACGACATCAT
CCGCAAGTTCTCACCCTCGAGGCGCCTGGAGTCGCGAGAGCTCGCCAAGC
TTCTCGCCCAGCCGCATTTTCGTGCTCTTTTGCGCGCCCATGATGAGATA
GGAGCACTCTACGAGCAACGACTTAAAGCTGCCGGGGGATCCACCAGCCA
ACTAGAGATCGCCAGCCAACGCCAAACGGGAGGCTACCTGTTCACCGAGG
ACGTCCTCAACACCAAGATGCCAGTGGAGACCATCAAGATGGTGGGTCTG
CGCCGAGATCCCAGCAAGCCGCTGGGCCTGACCGTCGAACTGGACGAATT
CAAGCAGCTGGTCGTGGCCAGGATTCTGGCGGGCGGGGTGATCGACAAAC
AGAGCATGCTGCACGTTGGCGATGTCATCCTAGAGGTGAACGGTACGCCC
GTTCGCACTCCCGATGAGCTGCAGGTGGAGGTGTCGCGGGCCAAGGAGAA
TCTCACCCTCAAGATCGGGCCGAACGTGGACGAGGAGATCAAGAGCGGTC
GCTATACTGTGAGTGGGGGTCAGGTAAAACAGAATGGCATCGCGAGTCTC
GAGACGGGCAAGAAACTGACGTGCTACATGCGTGCCCTTTTCACATACAA
TCCATCCGAAGATTCCTTGCTGCCATGCAGGGATATTGGATTGCCCTTCA
AGTCGGGCGACATTTTGCAGATCATCAACGTAAAGGATCCCAACTGGTGG
CAGGCCAAGAACATTACTGCCGAATCTGACAAAATTGGACTCATACCATC
CCAAGAGCTGGAGGAGCGGCGCAAAGCCTTCGTGGCCCCCGAGGCGGACT
ACGTTCACAAGATTGGCATTTGCGGAACAAGAATCTCGAAGCGAAAGCGC
AAGACCATGTACCGATCTGTGGCCAATTGCGAGTTCGACAAGGCGGAGCT
GCTGCTCTATGAGGAGGTCACGCGGATGCCGCCGTTCCGCAGGAAAACCC
TGGTTCTCATCGGTGTTTCCGGGGTGGGAAGACGTACGCTCAAGAATCGG
CTGATCAACAGCGATGTGGACAAGTTCGGAGCGGTCATTCCACATACCAG
TCGCCCCAAGCGCGCCTTGGAGGAGAACGGCAGTAGCTACTGGTTCATGG
ACCGCGAGGAAATGGAAGAGGCCGTGCGGAACAACGAGTTCCTGGAGTAC
GGCGAGCACAATGGCAATCTGTACGGCACGCATTTGCAGTCCATCAAGGA
TGTGATCAACAGTGGGCGCATGTGCATCCTGGATTGTGCACCGAATGCCC
TGAAGATCCTGCACAACAGCCAGGAACTGATGCCTTTTGTCATCTTTGTG
GCAGCGCCTGGCATGGAGCAGCTCAAGACCATCTATGCGGATCGCAGGGC
CACGGGCTCCAACCGGAATTTATCTTTTGATCGCCAGAGTTCCATAAGAT
TCAGCTCCAGACGCGCCCGTACGCTCGAGTCCCTAGCGTCGTTGTATGAG
GACGACGACCTTGTCGCCACCGTCGAGGAGAGCAGCTTCGTCCAGCGCAA
GTATGAGAAATACTTCGACATGGTCATCGTGAACGAGGACTTCGATGAGA
CGTTCCGCCAGGTGGTGGAAACGCTGGATCAGATGAGCCACGAGGAGCAG
TGGGTGCCTGTCAACTGGATCTACGCAAGCTTTCTAGACCAT
BO18209.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:48:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
vari-RB | 1911 | CG9326-PB | 1..1908 | 17..1924 | 9510 | 99.9 | Plus |
vari-RE | 1836 | CG9326-PE | 1..1659 | 17..1675 | 8265 | 99.9 | Plus |
vari-RF | 1410 | CG9326-PF | 1..1407 | 518..1924 | 7035 | 100 | Plus |
vari-RE | 1836 | CG9326-PE | 1660..1833 | 1751..1924 | 870 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:48:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
vari-RB | 2610 | CG9326-RB | 285..2192 | 17..1924 | 9510 | 99.9 | Plus |
vari-RC | 2320 | CG9326-RC | 28..1732 | 220..1924 | 8525 | 100 | Plus |
vari-RF | 2379 | CG9326-RF | 88..1791 | 221..1924 | 8520 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:48:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20791167..20791664 | 871..374 | 2490 | 100 | Minus |
2L | 23513712 | 2L | 20789721..20790052 | 1675..1344 | 1660 | 100 | Minus |
2L | 23513712 | 2L | 20790125..20790335 | 1343..1133 | 1055 | 100 | Minus |
2L | 23513712 | 2L | 20789250..20789425 | 1924..1749 | 880 | 100 | Minus |
2L | 23513712 | 2L | 20790391..20790558 | 1132..965 | 840 | 100 | Minus |
2L | 23513712 | 2L | 20792113..20792267 | 374..220 | 775 | 100 | Minus |
2L | 23513712 | 2L | 20796653..20796758 | 122..17 | 530 | 100 | Minus |
2L | 23513712 | 2L | 20790622..20790721 | 970..871 | 500 | 100 | Minus |
2L | 23513712 | 2L | 20796037..20796135 | 220..122 | 465 | 98 | Minus |
2L | 23513712 | 2L | 20789585..20789660 | 1751..1676 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:48:25 has no hits.
BO18209.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:57:04 Download gff for
BO18209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vari-RB | 1..1911 | 17..1925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:29:38 Download gff for
BO18209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vari-RB | 274..2190 | 8..1924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:59:57 Download gff for
BO18209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vari-RB | 285..2192 | 17..1926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:57:04 Download gff for
BO18209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vari-RB | 274..2190 | 8..1924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:51 Download gff for
BO18209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
vari-RB | 285..2192 | 17..1926 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:51 Download gff for
BO18209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20796037..20796134 | 123..220 | 97 | <- | Minus |
2L | 20796653..20796758 | 17..122 | 100 | | Minus |
2L | 20790125..20790335 | 1133..1343 | 100 | <- | Minus |
2L | 20790391..20790552 | 971..1132 | 100 | <- | Minus |
2L | 20790622..20790720 | 872..970 | 100 | <- | Minus |
2L | 20789586..20789660 | 1676..1750 | 100 | <- | Minus |
2L | 20789248..20789423 | 1751..1926 | 98 | <- | Minus |
2L | 20789721..20790052 | 1344..1675 | 100 | <- | Minus |
2L | 20791167..20791664 | 374..871 | 100 | <- | Minus |
2L | 20792114..20792266 | 221..373 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:59:57 Download gff for
BO18209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20789586..20789660 | 1676..1750 | 100 | <- | Minus |
arm_2L | 20789248..20789423 | 1751..1926 | 98 | <- | Minus |
arm_2L | 20789721..20790052 | 1344..1675 | 100 | <- | Minus |
arm_2L | 20790125..20790335 | 1133..1343 | 100 | <- | Minus |
arm_2L | 20790391..20790552 | 971..1132 | 100 | <- | Minus |
arm_2L | 20790622..20790720 | 872..970 | 100 | <- | Minus |
arm_2L | 20791167..20791664 | 374..871 | 100 | <- | Minus |
arm_2L | 20792114..20792266 | 221..373 | 100 | <- | Minus |
arm_2L | 20796037..20796134 | 123..220 | 97 | <- | Minus |
arm_2L | 20796653..20796758 | 17..122 | 100 | | Minus |
BO18209.pep Sequence
Translation from 16 to 1942
> BO18209.pep
MVRWSARSRRQARQDKVELLARNNKVNGEDDTSDNAAFRNSTDLSDHDEI
FLKGLLGSSSNTPHKELMLNPTEPQPVPLFLPAHLNNKPICDDIIRKFSP
SRRLESRELAKLLAQPHFRALLRAHDEIGALYEQRLKAAGGSTSQLEIAS
QRQTGGYLFTEDVLNTKMPVETIKMVGLRRDPSKPLGLTVELDEFKQLVV
ARILAGGVIDKQSMLHVGDVILEVNGTPVRTPDELQVEVSRAKENLTLKI
GPNVDEEIKSGRYTVSGGQVKQNGIASLETGKKLTCYMRALFTYNPSEDS
LLPCRDIGLPFKSGDILQIINVKDPNWWQAKNITAESDKIGLIPSQELEE
RRKAFVAPEADYVHKIGICGTRISKRKRKTMYRSVANCEFDKAELLLYEE
VTRMPPFRRKTLVLIGVSGVGRRTLKNRLINSDVDKFGAVIPHTSRPKRA
LEENGSSYWFMDREEMEEAVRNNEFLEYGEHNGNLYGTHLQSIKDVINSG
RMCILDCAPNALKILHNSQELMPFVIFVAAPGMEQLKTIYADRRATGSNR
NLSFDRQSSIRFSSRRARTLESLASLYEDDDLVATVEESSFVQRKYEKYF
DMVIVNEDFDETFRQVVETLDQMSHEEQWVPVNWIYASFLDH
BO18209.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:21:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
vari-PB | 636 | CG9326-PB | 1..636 | 1..636 | 3263 | 99.7 | Plus |
vari-PD | 615 | CG9326-PD | 1..615 | 1..636 | 3129 | 96.4 | Plus |
vari-PE | 611 | CG9326-PE | 1..611 | 1..636 | 3109 | 95.8 | Plus |
vari-PF | 469 | CG9326-PF | 1..469 | 168..636 | 2418 | 100 | Plus |
vari-PC | 469 | CG9326-PC | 1..469 | 168..636 | 2418 | 100 | Plus |