Clone Sequence Records
BO18211.3prime Sequence
791 bp (756 high quality bases) assembled on 2006-10-13
> BO18211.3prime
ATGGTCTAGAAAGCTTGCGCAGTATTTGCTCTTGAAGTCATAGTCATCCT
CCGATCCGGTGGCCAGTAGCTCCTCCTTGCAGCCATGGTGCAGTCGATGC
ACATCCGTGTCGAAGCACTCATCGTGGAGTCGTTTGTCCCGGCTTTTACT
TCGCTGCCGCCTGGAATGCGATGAGTGACCGTGTCCGTGTCCATGTCCGT
GGTGATTGTGCACATGGCTGCTGGAACCATGATGATGCTCAGACGGTGGT
GAGTGATGGCTGCTGCCTGAATGGATGGTCGCCTTATGGTGGAAGGAAGT
TGGCGGAGGACTGAGCTCCCTTGGCGGGCGACAGTGGCTGGATGGCGGTA
TGGGATCATCGAACCGAGGACACGGATGATCTCCAACTGGCGAAGCTGTC
TCATAGCGTTTCGAAAGCATTGTGAACTCCTGATGTGCCGAGCACAGGGC
CTGCAGGCGATGCAGAAGATCCGTTTCCGGCAGGTCGCGAAGATGCAGTG
TCCTGGCCACCGATGTGCGGAAGGATTGCAAATGCGAAAGCCGCTGATTG
GCATCCGAGAGTTGGGAGCTCAAGCGACTGACATCATCGCGCATAGAATT
TATTAGCGCCTCATCGCGGCATCTGCGATTCTGATTGGATTCACAGGAGG
ACTTGAGGCGCTCCTTCAGGGCATTAAGTTGGGAGAGCAGGCGCGTCTTC
TCATCCTCCAGATCGCATATCTGGGTGGTCAGCTCATCGATCTTTCTGGC
CCTCTCCAACGAGGTGATCTTTATACTCCACAGCCTCGGCT
BO18211.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:13:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31790-PA | 2481 | CG31790-RA | 1707..2478 | 791..19 | 3800 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:49:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43338-RB | 2694 | CG43338-RB | 1847..2618 | 791..19 | 3825 | 99.7 | Minus |
| CG43338-RA | 2631 | CG43338-RA | 1784..2555 | 791..19 | 3825 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:49:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18666968..18667546 | 19..597 | 2895 | 100 | Plus |
| 2L | 23513712 | 2L | 18667607..18667799 | 598..791 | 905 | 99 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:49:18 has no hits.
BO18211.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:19:56 Download gff for
BO18211.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31790-PA | 1707..2481 | 18..791 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 07:12:54 Download gff for
BO18211.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43338-RA | 1784..2555 | 19..791 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:17:23 Download gff for
BO18211.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43338-RA | 1784..2555 | 19..791 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:17:23 Download gff for
BO18211.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18666968..18667546 | 19..597 | 100 | <- | Plus |
| 2L | 18667607..18667799 | 598..791 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 07:12:54 Download gff for
BO18211.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18666968..18667546 | 19..597 | 100 | <- | Plus |
| arm_2L | 18667607..18667799 | 598..791 | 98 | | Plus |
BO18211.5prime Sequence
760 bp (744 high quality bases) assembled on 2006-10-13
> BO18211.5prime
GAAGTTATCAGTCGACATGCCCAGTGAAAATCATCTGCATCACCATCACT
TGGGACACACTGGTGGATTATCTCCGCATCATCATCACTTGTTGGACACA
TCCTGCAGCAATACGGGAATCACTGTGACAGAACATCATCATGGTCTCGA
CTTGACCACCACACTGCGCAGTGAACTGGCTGCGTTGTCCTACAAAAAGG
AGCGACTTACGGGGGAGCTTGCTGAAGCGCGTGCAGCATTGTGCAGCAAA
GATGCGGATATCGAGAATCTGCGAGCCCAGGCTGCTCGGCAGACTGCCCT
CATCGGATCCCTCCAGAGTCGTCTGCAAAACTCGGAGAGCAGGGAGCAGG
CTGTCCAGGCCCGATGTGATTCCACCATTCAGACGGTGCAGCGGGAGAAG
CGTAGCTCCGACGAGCGCAACAAAGAGCTAATCTGCAAGATACAGCATCT
GGAAACGCATATGGCCAGTGAGGAATCGCAAAAGGAGCAGATCAAGGCTC
AGCTGCACGATCTCCTGCGACGCCTTAGCATCACTTTGGGAATGGATGTG
TGCGATGGCAATCAGAATTCCCATGCCACACCCGAGTGCATCATCTCGCG
GGCCGAGGAGGTGATGGTGGAGCTGCAAAGGACGAAAGCCAAGGTCAGTT
CCACCTGCGACACGCTCAGCTCCTGCGAAAATGAACTGCTCAACTTGAAG
TCGCTGGCCAACATTGAGAAGCAGCGGCTCACGGCCCAACTTGATGGAGC
TGGCAATCAC
BO18211.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 19:13:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31790-PA | 2481 | CG31790-RA | 1..744 | 17..760 | 3695 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:24:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43338-RA | 2631 | CG43338-RA | 78..821 | 17..760 | 3705 | 99.9 | Plus |
| CG43338-RB | 2694 | CG43338-RB | 217..884 | 93..760 | 3340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:24:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18668823..18669367 | 760..216 | 2725 | 100 | Minus |
| 2L | 23513712 | 2L | 18669438..18669562 | 217..93 | 625 | 100 | Minus |
| 2L | 23513712 | 2L | 18669888..18669966 | 95..17 | 380 | 98.7 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:24:21 has no hits.
BO18211.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 13:19:56 Download gff for
BO18211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31790-PA | 1..744 | 17..760 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 07:28:04 Download gff for
BO18211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43338-RA | 78..821 | 17..760 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:47:46 Download gff for
BO18211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43338-RA | 78..821 | 17..760 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:47:46 Download gff for
BO18211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18668823..18669365 | 218..760 | 100 | <- | Minus |
| 2L | 18669438..18669563 | 92..217 | 99 | <- | Minus |
| 2L | 18669892..18669966 | 17..91 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 07:28:04 Download gff for
BO18211.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18668823..18669365 | 218..760 | 100 | <- | Minus |
| arm_2L | 18669438..18669563 | 92..217 | 99 | <- | Minus |
| arm_2L | 18669892..18669966 | 17..91 | 100 | | Minus |
BO18211.complete Sequence
2512 bp assembled on 2007-03-23
GenBank Submission: FJ634343
> BO18211.complete
GAAGTTATCAGTCGACATGCCCAGTGAAAATCATCTGCATCACCATCACT
TGGGACACACTGGTGGATTATCTCCGCATCATCATCACTTGTTGGACACA
TCCTGCAGCAATACGGGAATCACTGTGACAGAACATCATCATGGTCTCGA
CTTGACCACCACACTGCGCAGTGAACTGGCTGCGTTGTCCTACAAAAAGG
AGCGACTTACGGGGGAGCTTGCTGAAGCGCGTGCAGCATTGTGCAGCAAA
GATGCGGATATCGAGAATCTGCGAGCCCAGGCTGCTCGGCAGACTGCCCT
CATCGGATCCCTCCAGAGTCGTCTGCAAAACTCGGAGAGCAGGGAGCAGG
CTGTCCAGGCCCGATGTGATTCCACCATTCAGACGGTGCAGCGGGAGAAG
CGTAGCTCCGACGAGCGCAACAAAGAGCTAATCTGCAAGATACAGCATCT
GGAAACGCATATGGCCAGTGAGGAATCGCAAAAGGAGCAGATCAAGGCTC
AGCTGCACGATCTCCTGCGACGCCTTAGCATCACTTTGGGAATGGATGTG
TGCGATGGCAATCAGAATTCCCATGCCACACCCGAGTGCATCATCTCGCG
GGCCGAGGAGGTGATGGTGGAGCTGCAAAGGACGAAAGCCAAGGTCAGTT
CCACCTGCGACACGCTCAGCTCCTGCGAAAATGAACTGCTCAACTTGAAG
TCGCTGGCCAACATTGAGAAGCAGCGGCTCACGGCCCAACTTGATGGAGC
TGGCAATCACAACCACGAGTTGGAAGGACGCTGTCGCCAATACGAAAGGG
ATCTTCAGATCCAAAGAGATCGCTTGACTGAATCGGAAATCAACGGCGAG
AAGCTCAAGGAAGAGCTGCGCGGCTTTGAGTCGCGATGCCATCGTTTGCA
AAACAACCTGGACCGGACTCAGGGCGATCGTCTGCAGTTCTTGCGGGGAT
TGAGCAATCTCTTGAATGTTCCCGAACCGTGCGAAACGCTCATCAAGGAC
AAGCTGAGAGAGATTCTGGCGGAGAACCAGGCCATGCATGCGCAAATGCA
CTCTCTGCGAGATCAGCTGAACTCGGAGCATGAGAAGCTTAAGGAAACCC
AACAGACCACCGAATGTCGCCTCCGTTCTGGCGAGGCTCAGAAATGTGAG
CTAACTGAGCGCTTGGAGAAGTGCCATGCCGAGATCCATACTCTTCGAAA
GGATCACATGGGTCTATCGGAGTTCCTGCAGCGACTGGCCCTCGCGATGA
ACTGGGGTGAGTGCTCTGCCCCTCCGGCTCTTGGAACTGATACCAATCTA
ATGGCGGAGAACTTGCTTGAGAGAGCCGAGAGACTCGCCGCTCACTGCGA
CCACGAGGCACCTCATCATCATCATCATCATCACAGTCCGGATAAGGGTT
GCTGTGATCACGGACATGGTCATGGGAAACTTCGCCGCGAGAGATCCTGT
CATGACATTCCCCTCAAGGAAAGCAGCAGTGTCTACAACCTGCAGCGACG
TGTTCGAGTTCTCAGGGAGCAAGTGCAGCGACGGGATCTCCACCTGGAGC
TACTGCGTCGCAAGCTGGCCATCATAGAGGACGGTGCGCGAGGAAAGTGC
ATGTTGCAGGGTGAACGGGATGAGGCGGTTTGCCGGGCCAAGAAGGCGGC
CAAGCAGGTGGACAAGTTGAGTGCCCAGCTGGCCGATGCCCGATCTCAGA
TAGCAGAGGTCAAGGCCCAGCTAGCCGAGGCTGTGGAGTATAAGATCACC
TCGTTGGAGAGGGCCAGAAAGATCGATGAGCTGACCACACAGATATGCGA
TCTGGAGGATGAGAAGACGCGCCTGCTCTCCCAACTTAATGCCCTGAAGG
AGCGCCTCAAGTCCTCCTGTGAATCCAATCAGAATCGCAGATGCCGCGAT
GAGGCGCTAATAAATTCTATGCGCGATGATGTCAGTCGCTTGAGCTCCCA
ACTCTCGGATGCCAATCAGCGGCTTTCGCATTTGCAATCCTTCCGCACAT
CGGTGGCCAGGACACTGCATCTTCGCGACCTGCCGGAAACGGATCTTCTG
CATCGCCTGCAGGCCCTGTGCTCGGCACATCAGGAGTTCACAATGCTTTC
GAAACGCTATGAGACAGCTTCGCCAGTTGGAGATCATCCGTGTCCTCGGT
TCGATGATCCCATACCGCCATCCAGCCACTGTCGCCCGCCAAGGGAGCTC
AGTCCTCCGCCAACTTCCTTCCACCATAAGGCGACCATCCATTCAGGCAG
CAGCCATCACTCACCACCGTCTGAGCATCATCATGGTTCCAGCAGCCATG
TGCACAATCACCACGGACATGGACACGGACACGGTCACTCATCGCATTCC
AGGCGGCAGCGAAGTAAAAGCCGGGACAAACGACTCCACGATGAGTGCTT
CGACACGGATGTGCATCGACTGCACCATGGCTGCAAGGAGGAGCTACTGG
CCACCGGATCGGAGGATGACTATGACTTCAAGAGCAAATACTGCGCAAGC
TTTCTAGACCAT
BO18211.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:13:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43338-RA | 2481 | CG43338-PA | 1..2478 | 17..2494 | 12375 | 100 | Plus |
| CG43338-RB | 2562 | CG43338-PB | 158..2559 | 93..2494 | 12010 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:13:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43338-RA | 2631 | CG43338-RA | 78..2555 | 17..2494 | 12375 | 100 | Plus |
| CG43338-RB | 2694 | CG43338-RB | 217..2618 | 93..2494 | 12010 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:13:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18667607..18668480 | 1915..1042 | 4370 | 100 | Minus |
| 2L | 23513712 | 2L | 18668541..18669367 | 1042..216 | 4135 | 100 | Minus |
| 2L | 23513712 | 2L | 18666968..18667546 | 2494..1916 | 2895 | 100 | Minus |
| 2L | 23513712 | 2L | 18669438..18669562 | 217..93 | 625 | 100 | Minus |
| 2L | 23513712 | 2L | 18669888..18669966 | 95..17 | 380 | 98.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:13:10 has no hits.
BO18211.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:09:22 Download gff for
BO18211.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31790-RA | 1..2481 | 17..2495 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:26:27 Download gff for
BO18211.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31790-RA | 74..2551 | 17..2494 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:03 Download gff for
BO18211.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43338-RA | 78..2555 | 17..2496 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:09:22 Download gff for
BO18211.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31790-RA | 74..2551 | 17..2494 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:02:40 Download gff for
BO18211.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43338-RA | 78..2555 | 17..2496 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:02:40 Download gff for
BO18211.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18669438..18669563 | 92..217 | 99 | <- | Minus |
| 2L | 18669892..18669966 | 17..91 | 100 | | Minus |
| 2L | 18666966..18667546 | 1916..2496 | 99 | <- | Minus |
| 2L | 18667607..18668479 | 1043..1915 | 100 | <- | Minus |
| 2L | 18668541..18669365 | 218..1042 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:03 Download gff for
BO18211.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18666966..18667546 | 1916..2496 | 99 | <- | Minus |
| arm_2L | 18667607..18668479 | 1043..1915 | 100 | <- | Minus |
| arm_2L | 18668541..18669365 | 218..1042 | 100 | <- | Minus |
| arm_2L | 18669438..18669563 | 92..217 | 99 | <- | Minus |
| arm_2L | 18669892..18669966 | 17..91 | 100 | | Minus |
BO18211.pep Sequence
Translation from 16 to 2512
> BO18211.pep
MPSENHLHHHHLGHTGGLSPHHHHLLDTSCSNTGITVTEHHHGLDLTTTL
RSELAALSYKKERLTGELAEARAALCSKDADIENLRAQAARQTALIGSLQ
SRLQNSESREQAVQARCDSTIQTVQREKRSSDERNKELICKIQHLETHMA
SEESQKEQIKAQLHDLLRRLSITLGMDVCDGNQNSHATPECIISRAEEVM
VELQRTKAKVSSTCDTLSSCENELLNLKSLANIEKQRLTAQLDGAGNHNH
ELEGRCRQYERDLQIQRDRLTESEINGEKLKEELRGFESRCHRLQNNLDR
TQGDRLQFLRGLSNLLNVPEPCETLIKDKLREILAENQAMHAQMHSLRDQ
LNSEHEKLKETQQTTECRLRSGEAQKCELTERLEKCHAEIHTLRKDHMGL
SEFLQRLALAMNWGECSAPPALGTDTNLMAENLLERAERLAAHCDHEAPH
HHHHHHSPDKGCCDHGHGHGKLRRERSCHDIPLKESSSVYNLQRRVRVLR
EQVQRRDLHLELLRRKLAIIEDGARGKCMLQGERDEAVCRAKKAAKQVDK
LSAQLADARSQIAEVKAQLAEAVEYKITSLERARKIDELTTQICDLEDEK
TRLLSQLNALKERLKSSCESNQNRRCRDEALINSMRDDVSRLSSQLSDAN
QRLSHLQSFRTSVARTLHLRDLPETDLLHRLQALCSAHQEFTMLSKRYET
ASPVGDHPCPRFDDPIPPSSHCRPPRELSPPPTSFHHKATIHSGSSHHSP
PSEHHHGSSSHVHNHHGHGHGHGHSSHSRRQRSKSRDKRLHDECFDTDVH
RLHHGCKEELLATGSEDDYDFKSKYCASFLDH
BO18211.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:44:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43338-PA | 826 | CG31790-PA | 1..826 | 1..826 | 4359 | 100 | Plus |
| CG43338-PB | 853 | CG43338-PB | 53..853 | 26..826 | 4202 | 100 | Plus |
| GM130-PA | 795 | CG11061-PA | 70..652 | 13..503 | 172 | 21.7 | Plus |
| brp-PH | 1740 | CG42344-PH | 470..1117 | 67..653 | 170 | 21.9 | Plus |
| brp-PE | 1740 | CG42344-PE | 470..1117 | 67..653 | 170 | 21.9 | Plus |
