BO18212.complete Sequence
1654 bp assembled on 2009-10-23
GenBank Submission: KX795118
> BO18212.complete
GAAGTTATCAGTCGACATGAGCAGACGACGGGCAATTACCATGTCGTTGG
CTCCCCATCTTGGCCAGGCTTTTAGCCTCTGCCTGTGCCTGTGCCTGTGC
CTGGTTTTGGCCACATTGCCAGTGGCCCTGGGATTGGCCAACTGCCCGAA
TGGCTGCGAGTGCGACGACGACACCCTGATGGTCAATTGCGGCGAGGGCA
CGCTGGACGTCCTGCCCATCGCCCTGAATCCCGCCATCCAGCGACTGGTG
ATCAAGAACAACAAACTGAAGACCATCGACTCATCCATGCAGTTCTATGC
GCAGCTCACTTTCCTTGATCTGTCATTCAATGACATGCTCACCATACCGG
AACGATCGTTTGCGTATCACGCCAAATTGCAGGAGCTGCATCTGGACCAC
AATAAGATTGGCCAGGTGTCGAACAAGACCTTCCTCGGACTGTCGACCAT
CAGTGTTTTAAATCTGAGAGGCAACTTGATTGCCGAACTAGAGTACCGCA
CTTTTTCGCCTATGGTCAAGCTCGCTGAGCTTAATCTCGGCCAGAATCGC
ATCAGCCACATCGATCCACATGCCCTGGATGGCTTGGACAACCTGAGGGT
GCTCTATCTGGATGATAATACACTGACCACAGTGCCGGGAGAACTAACCT
TCCAGGCACTCCACTCCCTGGCAGAGCTATACTTGGGCACCAATTCCTTT
ATGACAATTCCCGGAGGAGCTTTCCAGGATCTCAAAGGATTAACCAGATT
GGATCTGCGCGGAGCTGGCTTGCACAACATCTCGGGAGATGCTCTCAAGG
GTCTGGTGTCCCTTCGCTTTTTGGATCTGTCAGATAATCGCCTCCCTGCG
ATACCCACAGCAGCTTTTCAGCGATTGGGACGCCTGGAACAGCTAAACAT
TGGCCAGAATGACTTTGAGGTGATCTCCTCGGGCGCCTTTTCGGGTCTTC
GGGAGCTGAGGCACTTGGAACTGACAGGTGCCCAGCGACTGAGACGCGTG
GAAAGCGGTGCCTTCAGTGGAAACACAAACCTGGAGCACCTTAACCTCTC
CAGTAACAAGCAGTTGAACGAATTATCCTCCATCGCCTTGGGTGGCTTGC
CCCATCTGAGCACAGTGGTGCTGAAGGCCAATCAATTGAGCAGCCTGGAT
GAAGGTTTAGTGCCCTGGGCTGATCTACAAACCCTTGATCTCTCGGAGAA
TCCATTTGAATGTGACTGCAGACTACTATGGCTGCGCCATTTGCTGGTCA
GCAGGAATGCCAGTGGACAGTATGCGCCCGTCATCTGTGCCTATCCAACG
GCTCTGAGGGACTTGCCACTGGCCCATTTGGCAGAACCACTTTTAGGCTG
TGCCCATGGAGCCGCCAGTAAGCAGGCGATCATCGGGATCCTGGTGGTGG
CCTGTGCCGCTCTAATAACCACTTTGGCCCTGGTTCTCTACACCTGCCGT
CATAGGATTCGGGAGATGCTAAAAGGACATTCGGCGTTAGGGCGTAAGGA
GCGCGAATACCAAAAGACCTTCTCCGATGAAGAGTACATGTCGCGACCAC
CTCCTGGTGGCGGTGGAGTTCATCCTGCCGCTGGGGGCTATCCCTACATC
GCTGGCAACAGCCGGATGATACCGGTCACCGAGCTTGCAAGCTTTCTAGA
CCAT
BO18212.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:42:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| caps-RE | 2436 | CG11282-PE | 1..1620 | 17..1636 | 8100 | 100 | Plus |
| caps-RD | 2343 | CG11282-PD | 1..1620 | 17..1636 | 8100 | 100 | Plus |
| caps-RB | 1623 | CG11282-PB | 1..1620 | 17..1636 | 8100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:42:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| caps-RE | 4841 | CG11282-RE | 888..2507 | 17..1636 | 8100 | 100 | Plus |
| caps-RD | 4841 | CG11282-RD | 888..2507 | 17..1636 | 8100 | 100 | Plus |
| caps-RB | 4628 | CG11282-RB | 675..2294 | 17..1636 | 8100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:42:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13275689..13277308 | 17..1636 | 8100 | 100 | Plus |
| 3L | 28110227 | 3L | 13115372..13115795 | 130..553 | 545 | 75.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:42:55 has no hits.
BO18212.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:38:54 Download gff for
BO18212.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| caps-RB | 678..2297 | 17..1638 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:55:36 Download gff for
BO18212.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| caps-RA | 888..2507 | 17..1638 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:55:08 Download gff for
BO18212.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| caps-RB | 675..2294 | 17..1638 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:55:08 Download gff for
BO18212.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13275689..13277308 | 17..1638 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:55:36 Download gff for
BO18212.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13268789..13270408 | 17..1638 | 99 | | Plus |
BO18212.pep Sequence
Translation from 16 to 1654
> BO18212.pep
MSRRRAITMSLAPHLGQAFSLCLCLCLCLVLATLPVALGLANCPNGCECD
DDTLMVNCGEGTLDVLPIALNPAIQRLVIKNNKLKTIDSSMQFYAQLTFL
DLSFNDMLTIPERSFAYHAKLQELHLDHNKIGQVSNKTFLGLSTISVLNL
RGNLIAELEYRTFSPMVKLAELNLGQNRISHIDPHALDGLDNLRVLYLDD
NTLTTVPGELTFQALHSLAELYLGTNSFMTIPGGAFQDLKGLTRLDLRGA
GLHNISGDALKGLVSLRFLDLSDNRLPAIPTAAFQRLGRLEQLNIGQNDF
EVISSGAFSGLRELRHLELTGAQRLRRVESGAFSGNTNLEHLNLSSNKQL
NELSSIALGGLPHLSTVVLKANQLSSLDEGLVPWADLQTLDLSENPFECD
CRLLWLRHLLVSRNASGQYAPVICAYPTALRDLPLAHLAEPLLGCAHGAA
SKQAIIGILVVACAALITTLALVLYTCRHRIREMLKGHSALGRKEREYQK
TFSDEEYMSRPPPGGGGVHPAAGGYPYIAGNSRMIPVTELASFLDH
BO18212.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:08:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| caps-PE | 811 | CG11282-PE | 1..540 | 1..540 | 2778 | 100 | Plus |
| caps-PD | 780 | CG11282-PD | 1..540 | 1..540 | 2778 | 100 | Plus |
| caps-PB | 540 | CG11282-PB | 1..540 | 1..540 | 2778 | 100 | Plus |
| caps-PA | 540 | CG11282-PA | 1..540 | 1..540 | 2778 | 100 | Plus |
| trn-PA | 737 | CG11280-PA | 15..513 | 30..519 | 1600 | 63.7 | Plus |
